Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------YAB1                <---------AHL20(2)                                                         --------->ATHB12               --------->AHL20(2)                  --------->AHL20(2)                    <---------YAB1              ----------->GT1           <---------TOE2(3)                        --------->AHL20(2)              <---------ZAT6          <-----------GT1                      <---------MYB52(1)                 ----------->GT1       <---------DAG2       <---------------AGL15   <---------AHL20(2)       <---------AHL20(2)       <----------DOF2 ----------->GT1        --------->TOE2(3)            --------->AHL20(2) -------DOF2    --------->AHL20(2)          <---------TOE1(2)----------->GT1 --------->AHL20(2)<<<<<<   tttttctcactttaacatttttatatagtgacatttttagtaatccaacgttatttatatgattagtaattcatcaaatttatatagtgataaaattcca  22213300                                                                                   <---------DEAR3(1)                                                                                   <---------MYB46(3)                                                                                <---------ANAC58                                                                                <---------ANAC46                                                                                <------MYB83                                                                                <------MYB46(1)                                                                                <---------ANAC58            --------->YAB1                                                     <---------AtMYB61            --------->AHL20(2)                        <<<<<<<<<MYB98           <---------MYB46(3)    <---------MYB46(3)                               --------->TOE2(3)         --------->MYB46(2)   <--------P--------->AHL20(2)                     ----------->GT1            --------->MYB55(2) <---------MYB46(3)                       ---------->DOF2   <---------ICU4     --------->MYB111(1) <<<<<<<<<<<LFY         ----------->RAV1(1)--------->DAG2  <---------ATHB12    --------->MYB111(2)   caatggttgttcaataaaaatatgaacaacacaatagaattagtaaaagtgactatgttaaatcattttcttcgctggggtttggtgggcgagttctaaa  22213400                                                                                         <---------TOE2(3)                                                                                         <---------TOE1(3)                                                                <---------AHL20(2) <---------AHL20(1)                                                              <---------YAB1       --------->AHL20(1)                                                             <---------AHL20(1)    <---------AHL20(2)       ------>NtERF2                                      --------->YAB1           --------->AHL20(2)      --------->RAP2.6(2)                          --------->ANAC58               <---------AHL20(2)    --------->At4g35610                            --------->ANAC58           --------->AHL20(2)   -- ---------->DOF2                           <---------At4g35610<---------AHL20(2)  --------->AHL20(2)   cccataagcggcccatttacttcgtaaactcaattcgatttgttcagcgttccaagcccataatattattttcaagggcataaaataaattgaggtttat  22213500                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                             --------                                                                                           --------->TOE2(3)                                   ------>MYB83                                           --------->YAB1                                   ------>MYB46(1)           <---------MYB46(3)          <---------ATHB12                       <---------HSFB2a(2)                   --------->MYB55(2) ------>ZmHOX2a(2)            --------->KAN4(2)     ----------->RAV1(1)       --------->ALFIN1   <------ZmHOX2a(2)    <           <---------GLK1(1)    --------->MYB46(3)   ---------->DOF2          --------->ARR14(2)   -- --------->GT1         --------->HSFB2a(2)     ---------->DOF2----------->GT1 <---------ARR14(2)  ---   atggaaaatttggaaattccctcgtccagaagaaaccaacaaaaactgcaaaagttcaagcggtgggagaaaaaacttcagatcgtagccattcattaaa  22213600        ----------->GT1                  <---------YAB1     --------->MYB52(1)         --------->SPL7 --------->YAB1               --------->ZAT14 -->AHL20(1)                --------->LBD16                                               <---------GLK1(1) ---AHL20(1)                --------------->AtSPL8                                 --------->WOX13(1) ---AHL20(2)               <---------ANAC46                                       --------->MYB46(3) -->AHL20(2)              ------>ZmHOX2a(2)             --------->TOE2(3)    --------->ANAC46 ->AHL20(2)              <------ZmHOX2a(2)      <<<<<<<<<<WRKY38           <---------AHL20(2) ---------YAB1          <---------ARR14(2)      <<<<<<<<<<WRKY26         ----------->TBP  --------->GLK1(1) ------->AHL20(2)       --------->ARR14(2) <------------CBF        ----------->RAV1(1)--------->YAB1 ------>YAB1  <-----------GT1 <---------ZAT18   <<<<<<<<<<WRKY43------>ZmHOX2a(1)------------>CBF   <   ttataatcaacggtttaaacctcttcgatccgcgtactctattcttattggtcaaataacttaatcctccaacatatataaacaacaatcagatttctct  22213700                                                                                                 <---                                                 <-------GAMYB                                   <---                                                --------->MYB111(2)                             <----                                                <---------MYB46(3)                              <----                                              <---------ANAC58                                 <-----                                              <-------GAMYB            <---------MYB46(3)     -------                                              <---------ANAC58         <---------ANAC46      <-------                                         <-----------RAV1(1)        <------MYB83            ---------                                       <----------DOF2              <------MYB46(1)       <---------LBD16                 --------->AHL20(2)  <----------DOF2               <---------MYB46(3)     ------>ZmHOX2a(2)            --------->ANAC58       <---------ZAT18    <---------MYB46(3)                 <------ZmHOX2a(2)            ----------->GT1      <---------ZAT18--------->MYB55(2)<---------ANAC46       --------->ARR14(1)   *TSS     --------->ANAC58    <-----------GT1<--------P         <---------ANAC58      --------->ARR14(2) ---------MYB52(1)          <---------AHL20(2)<---------ANAC46    <---------ANAC58      <---------ARR14(2)   ctgttaatttcgtcaagaaaaaaattcgatttttttgcgctctttgtgggttgttgttgttgaaaatggctggtcgtggaaaaactcttggatccggtgg  22213800                                                                                                 <---                                                                                                 <---                                                      <---------CCA1(2)                          <---                                                     <---------SPL7                          --------                                                    <---------ANAC58                         <-------                                                    <---------ANAC58                        <-------MYC2                                                 <------MYB83                               ------->MYC3                                                 <------MYB46(1)                          ------->TEIL      --------->ANAC58                          <---------MYB46(3)                      <---------SPL7      --------->ANAC58                          --------->MYB55(2)                     --------->DEAR3(1)    ---------->DOF2                            --------->ALFIN1                     <----------ID1 ------ANAC46                                  <---------MYB55(1)                   --------->ANAC46 ------PCF2                                    <--------P                        <---------ARR14(2) -----DEAR3(1)                                <---------MYB52(1)             --------->At5g28300<---- --NtERF2      <---------LBD16               --------->LBD16                --------->LBD16 <-------MYC3 ----MYB46(3)  --------->HSFB2a(2)          --------->LBD16    <---------CCA1(2) --------->ARR14(2) - -->ALFIN1     <---------HSFB2a(2)         <---------LBD16  <---------TOE1(2)<---------MYB52(1)<----- --MYB52(1)--------->REM1(1)           <XXXXXXXXXXXXXXXXXXXXMIR841B         ----------->GT1 ------->MYC2 >LBD16   <-------TEIL   ---------->DOF2 XXXXXXXXXXXXXXXXXXXX>MIR841B*---------->DOF2 --------->ANAC46   ggcgaagaaagctacatctcggagtagcaaagccggtcttcaattcccggtgggtcgtatcgctcgtttcttaaaagccggtaaatacgccgaacgtgtt  22213900                                                ------>NtERF2      <---------ZAT2                           --------->DEAR3(1)      --------->ZAT2           --------->HSFC1(1)    <---------MYB52(1)         <---------HSFB2a(2)    <-------PIF5               --------->HSFB2a(2)----------->GT1    ------->PIF5            <---------MYB52(1)--------->ATERF1(1)   --------->LBD16       <------NtERF2        <------NtERF2  <---------ATERF1(2)   --------->ABI4(1)     <----------CDC5  <---------DREB2C(2)  --------->RAP2.3(3)   <---------ATERF1(1)  <---------DEAR3(1)   --------->RRTF1(3)    ------>NtERF2  --------->ATERF1(2)  --------->RAP2.3(2)   <---------At4g35610 <------NtERF2         --------->ANAC46      --------->At4g35610 --------->ATERF1(1)   --------->DEAR3(1)    <------NtERF2                                      ----- ------MYB46(3)       --------->RAP2.3(1)   --------->RAP2.6(2)                                <----- ---MYB83  --------->LBD16--------->DEAR3(1)<---------ATERF1(2)                               ------- ---MYB46(1)          --------->ERF1        <---------DEAR3(1)                           --------->ARR14(2) ->ALFIN1<---------LBD16------>NtERF2<---------ARR14(2)   <-----------GT1                <---------ARR14(2) ----RAV1(1)          --------->ATERF1(1)   --------->ATERF1(2)                         <---------MYB52(1) -----AtMYB61         --------->DEAR4(2)    --------->DEAR3(1)              <----------DOF2   <------ ----->NtERF2        <---------ATERF1(1)   --------->ATERF1(1)         <-----------GT1<---------ANAC58 ---P --------->ABI4(2)<---------DEAR3(1)  <---------RAP2.6(2)     <----------DOF2    <---------ANAC58   ggtgccggtgctccggtttatctcgccgccgttctcgaatatttggccgccgaggtaaaattacatcgtcttttctctctttcccattccgtttccgatc  22214000                                   --------->GLK1(2)                                   --------->ARR14(2)                                   <---------ARR14(2)                                   ------->TEIL                                   <-----------ARR10                                --------->ANAC55(2)                      ----------->HVH21                    <---------ANAC58                    <---------AtLEC2                                     --------->DAG2                    <---------ANAC55(1)                            --------->AtLEC2      ----------->HVH21         <---------YAB1                     --------->ANAC58    <---------ANAC46    <---------At4g35610         <---------ANAC55(2)        <---------ARR14(2)          <---------ANAC58    ----------->RAV1(2)   ------>ZmHOX2a(2)                --------->ARR14(2)          <---------ANAC58 ->ZmHOX2a(2)       <---------ANAC55(2)                  --------->LBD16--------->ICU4<-------TEIL -ZmHOX2a(2)        --------->ANAC55(2)                ----------------->AG       ----------->ARR10 -->ARR14(2)        <---------ANAC46                   ============================================== ---ARR14(2)        <---------ANAC58           <-----------GT1     --------->ANAC58 <---------GLK1(2)   ttattcgtctgactctgtttttgcgtgatcgattacgaatctagggttcttacattttccgaatttgacatgcaaaaattgaattagattcgtgtttgaa  22214100                                                  <---------MYB46(3)                                                 <---------WOX13(1)                                                 <--------P                                               <------MYB46(1)                                               <------MYB83                          ------>MYB46(1)    <---------WOX13(1)                                 -----                        <---------MYB59    --------->ATHB12                                    <-----                        =============================================================================                   <---------WOX13(1)<---------MYB46(3)                  ------->TEIL          <-----           <---------AGP1 ------>MYB83    <---------YAB1        <---------ARR11(3)       --------->ANAC58      <---------REM1(1) <-----------------AGL3 <---------MYB46(3)<------ZmHOX2a(2)       --------->ANAC46 =========================================MADS_MADS             --------->ARR11(3)       --------->ANAC58   ttgaattgttgtagttctgtaattgacctaattttgggtttgttctgattggttgatggtaatcgagatcatatgaatcgttgtagttttctcgcaagat  22214200  Previous    Next  AGI:  At5g54640.1    Description:  HTA1/RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5); DNA binding. Identical to Histone H2A.6 (RAT5) [Arabidopsis Thaliana] (GB:Q9LD28); similar to HTA2 (HISTONE H2A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G27230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39058.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 22213703    to: 22214718    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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