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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
<---------
AHL20(2)
--------->
ATHB12
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
----------->
GT1
<---------
TOE2(3)
--------->
AHL20(2)
<---------
ZAT6
<-----------
GT1
<---------
MYB52(1)
----------->
GT1
<---------
DAG2
<---------------
AGL15
<---------
AHL20(2)
<---------
AHL20(2)
<----------
DOF2
----------->
GT1
--------->
TOE2(3)
--------->
AHL20(2)
-------
DOF2
--------->
AHL20(2)
<---------
TOE1(2)
----------->
GT1
--------->
AHL20(2)
<<<<<<
tttttctcactttaacatttttatatagtgacatttttagtaatccaacgttatttatatgattagtaattcatcaaatttatatagtgataaaattcca
22213300
<---------
MYB46(3)
<---------
DEAR3(1)
<------
MYB46(1)
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<------
MYB83
--------->
YAB1
<---------
AtMYB61
--------->
AHL20(2)
<<<<<<<<<
MYB98
--------->
MYB55(2)
<---------
MYB46(3)
--------->
TOE2(3)
<---------
MYB46(3)
<--------
P
--------->
AHL20(2)
----------->
GT1
--------->
MYB46(2)
<---------
MYB46(3)
---------->
DOF2
<---------
ICU4
--------->
MYB111(1)
<<<<<<<<<<<
LFY
----------->
RAV1(1)
--------->
DAG2
<---------
ATHB12
--------->
MYB111(2)
caatggttgttcaataaaaatatgaacaacacaatagaattagtaaaagtgactatgttaaatcattttcttcgctggggtttggtgggcgagttctaaa
22213400
<---------
TOE1(3)
<---------
TOE2(3)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
YAB1
<---------
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
------>
NtERF2
--------->
YAB1
<---------
AHL20(2)
--------->
RAP2.6(2)
--------->
ANAC58
--------->
AHL20(2)
--------->
At4g35610
--------->
ANAC58
--------->
AHL20(2)
--
---------->
DOF2
<---------
At4g35610
<---------
AHL20(2)
<---------
AHL20(2)
cccataagcggcccatttacttcgtaaactcaattcgatttgttcagcgttccaagcccataatattattttcaagggcataaaataaattgaggtttat
22213500
-------
-------
<------
<------
--------
--------->
TOE2(3)
------>
MYB83
--------->
YAB1
------>
MYB46(1)
<---------
MYB46(3)
<---------
ATHB12
<---------
HSFB2a(2)
--------->
MYB55(2)
------>
ZmHOX2a(2)
--------->
KAN4(2)
----------->
RAV1(1)
--------->
ALFIN1
<------
ZmHOX2a(2)
<
<---------
GLK1(1)
--------->
MYB46(3)
---------->
DOF2
--------->
ARR14(2)
--
--------->
GT1
--------->
HSFB2a(2)
---------->
DOF2
----------->
GT1
<---------
ARR14(2)
---
atggaaaatttggaaattccctcgtccagaagaaaccaacaaaaactgcaaaagttcaagcggtgggagaaaaaacttcagatcgtagccattcattaaa
22213600
----------->
GT1
<---------
YAB1
--------->
MYB52(1)
--------->
SPL7
--------->
YAB1
--------->
ZAT14
-->
AHL20(2)
--------->
LBD16
<---------
GLK1(1)
-->
AHL20(1)
--------------->
AtSPL8
--------->
WOX13(1)
---
AHL20(1)
<---------
ANAC46
--------->
MYB46(3)
---
AHL20(2)
------>
ZmHOX2a(2)
--------->
TOE2(3)
--------->
ANAC46
->
AHL20(2)
<------
ZmHOX2a(2)
<<<<<<<<<<
WRKY43
<---------
AHL20(2)
---------
YAB1
--------->
ARR14(2)
<<<<<<<<<<
WRKY38
----------->
TBP
--------->
GLK1(1)
------->
AHL20(2)
<---------
ARR14(2)
<------------
CBF
----------->
RAV1(1)
--------->
YAB1
------>
YAB1
<-----------
GT1
<---------
ZAT18
<<<<<<<<<<
WRKY26
------>
ZmHOX2a(1)
------------>
CBF
<
ttataatcaacggtttaaacctcttcgatccgcgtactctattcttattggtcaaataacttaatcctccaacatatataaacaacaatcagatttctct
22213700
<---
<-------
GAMYB
<---
--------->
MYB111(2)
<----
<---------
MYB46(3)
<----
<---------
ANAC58
<-----
<-------
GAMYB
<---------
MYB46(3)
-------
<---------
ANAC58
<---------
ANAC46
<-------
<-----------
RAV1(1)
<------
MYB83
---------
<----------
DOF2
<------
MYB46(1)
<---------
LBD16
--------->
AHL20(2)
<----------
DOF2
<---------
MYB46(3)
------>
ZmHOX2a(2)
--------->
ANAC58
<---------
ZAT18
<---------
MYB46(3)
<------
ZmHOX2a(2)
----------->
GT1
<---------
ZAT18
--------->
MYB55(2)
<---------
ANAC46
--------->
ARR14(1)
*
TSS
--------->
ANAC58
<-----------
GT1
<--------
P
<---------
ANAC58
--------->
ARR14(2)
---------
MYB52(1)
<---------
AHL20(2)
<---------
ANAC46
<---------
ANAC58
<---------
ARR14(2)
ct
gttaatttcgtcaagaaaaaaattcgatttttttgcgctctttgtgggttgttgttgttgaaa
atggctggtcgtggaaaaactcttggatccggtgg
22213800
<---
<---
<---------
CCA1(2)
<---
<---------
SPL7
--------
<---------
ANAC58
<-------
<---------
ANAC58
<-------
MYC2
<------
MYB83
------->
MYC3
<------
MYB46(1)
------->
TEIL
--------->
ANAC58
<---------
MYB46(3)
<---------
SPL7
--------->
ANAC58
--------->
MYB55(2)
--------->
DEAR3(1)
---------->
DOF2
--------->
ALFIN1
<----------
ID1
------
ANAC46
<---------
MYB55(1)
--------->
ANAC46
------
PCF2
<--------
P
<---------
ARR14(2)
-----
DEAR3(1)
<---------
MYB52(1)
--------->
At5g28300
<----
--
NtERF2
<---------
LBD16
--------->
LBD16
--------->
LBD16
<-------
MYC3
----
MYB46(3)
--------->
HSFB2a(2)
--------->
LBD16
<---------
CCA1(2)
--------->
ARR14(2)
-
-->
ALFIN1
<---------
HSFB2a(2)
<---------
LBD16
<---------
TOE1(2)
<---------
MYB52(1)
<-----
--
MYB52(1)
--------->
REM1(1)
<XXXXXXXXXXXXXXXXXXXX
MIR841B
----------->
GT1
------->
MYC2
>
LBD16
<-------
TEIL
---------->
DOF2
XXXXXXXXXXXXXXXXXXXX>
MIR841B*
---------->
DOF2
--------->
ANAC46
ggcgaagaaagctacatctcggagtagcaaagccggtcttcaattcccggtgggtcgtatcgctcgtttcttaaaagccggtaaatacgccgaacgtgtt
22213900
------>
NtERF2
<---------
ZAT2
--------->
DEAR3(1)
--------->
ZAT2
<---------
HSFB2a(2)
<---------
MYB52(1)
--------->
HSFC1(1)
<-------
PIF5
--------->
HSFB2a(2)
----------->
GT1
------->
PIF5
<---------
MYB52(1)
<----------
CDC5
--------->
LBD16
<------
NtERF2
<------
NtERF2
<---------
ATERF1(2)
--------->
ABI4(1)
--------->
ATERF1(1)
<---------
DREB2C(2)
--------->
RAP2.3(3)
<---------
At4g35610
<---------
DEAR3(1)
--------->
RRTF1(3)
------>
NtERF2
--------->
ATERF1(2)
--------->
DEAR3(1)
<------
NtERF2
<------
NtERF2
--------->
ANAC46
<---------
ATERF1(1)
--------->
ATERF1(1)
--------->
RAP2.3(2)
--------->
At4g35610
-----
------
MYB46(3)
--------->
RAP2.3(1)
--------->
DEAR3(1)
<-----
---
MYB83
--------->
LBD16
--------->
DEAR3(1)
<---------
ATERF1(2)
-------
---
MYB46(1)
--------->
ATERF1(1)
--------->
RAP2.6(2)
<---------
ARR14(2)
->
ALFIN1
<---------
LBD16
------>
NtERF2
<---------
DEAR3(1)
--------->
ARR14(2)
----
RAV1(1)
--------->
DEAR4(2)
--------->
ATERF1(2)
<---------
MYB52(1)
-----
AtMYB61
--------->
ERF1
<---------
ARR14(2)
<-----------
GT1
<----------
DOF2
<------
----->
NtERF2
<---------
ATERF1(1)
<---------
RAP2.6(2)
<-----------
GT1
<---------
ANAC58
---
P
--------->
ABI4(2)
<---------
DEAR3(1)
--------->
ATERF1(1)
<----------
DOF2
<---------
ANAC58
ggtgccggtgctccggtttatctcgccgccgttctcgaatatttggccgccgag
gtaaaattacatcgtcttttctctctttcccattccgtttccgatc
22214000
<-----------
ARR10
--------->
ARR14(2)
--------->
GLK1(2)
------->
TEIL
<---------
ARR14(2)
<---------
YAB1
----------->
HVH21
--------->
ANAC55(2)
<---------
AtLEC2
--------->
DAG2
<---------
ANAC58
--------->
AtLEC2
----------->
HVH21
<---------
ANAC55(2)
--------->
ANAC58
<---------
ANAC46
----------->
RAV1(2)
--------->
ANAC55(2)
<---------
ARR14(2)
<---------
ANAC58
<---------
At4g35610
------>
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ANAC58
->
ZmHOX2a(2)
<---------
ANAC46
--------->
LBD16
--------->
ICU4
<-------
TEIL
-
ZmHOX2a(2)
<---------
ANAC58
==============================================
-->
ARR14(2)
<---------
ANAC55(1)
----------------->
AG
----------->
ARR10
---
ARR14(2)
<---------
ANAC55(2)
<-----------
GT1
--------->
ANAC58
<---------
GLK1(2)
ttattcgtctgactctgtttttgcgtgatcgattacgaatctagggttcttacattttccgaatttgacatgcaaaaattgaattagattcgtgtttgaa
22214100
<---------
MYB46(3)
<---------
WOX13(1)
<--------
P
<---------
MYB46(3)
<------
MYB46(1)
------>
MYB46(1)
<---------
WOX13(1)
-----
<---------
MYB59
--------->
ATHB12
<-----
=============================================================================
<---------
WOX13(1)
<---------
MYB46(3)
------->
TEIL
<-----
<---------
AGP1
------>
MYB83
<---------
YAB1
<------
ZmHOX2a(2)
--------->
ANAC58
<---------
REM1(1)
<-----------------
AGL3
<------
MYB83
<---------
ARR11(3)
--------->
ANAC46
=========================================
MADS_MADS
--------->
ARR11(3)
--------->
ANAC58
ttgaattgttgtagttctgtaattgacctaattttgggtttgttctgattggttgatggtaatcgagatcatatgaatcgttgtagttttctcgcaagat
22214200
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AGI:
At5g54640.1
Description:
HTA1/RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5); DNA binding. Identical to Histone H2A.6 (RAT5) [Arabidopsis Thaliana] (GB:Q9LD28); similar to HTA2 (HISTONE H2A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G27230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39058.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119)
Range:
from: 22213703
to: 22214718
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.