Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ----------->GT1       --------->DAG2      ---------->DOF2 <---------------AGL15                                    <---------TOE2(3) --------------->AGL15                              <---------ZAT18 -->ZmHOX2a(2)--------->YAB1                    <---------ICU4 -----At4g35610          <-------TEIL          ------>ZmHOX2a(1)                                ----- ---->At4g35610  --------->YAB1                --------->ICU4   --------->ANAC46               ------ ----ARR11(3) <-----------GT1     <-----------GT1   --------->ZAT18                            <-----   ctgcaatataaagttataacaataagatgcaaaattttacaatctagtccttatggcactaagtttacgaaaacaattcatgtctaataagcccattacc  21315700      -------->ATHB1      <---------ICU4      <---------AHL20(2)      --------->ATHB12      -------->HAHB4      --------->ATHB51     <---------ATHB51                                                    --------->ANAC58     <---------YAB1                                                      --------->ANAC58     --------->ICU4                                               --------->YAB1  <---------AHL20(2)                 <----------DOF2            --------->AtLEC2          <---------MYB46(3)  --------->AHL20(2)                <---------DAG2            <---------ANAC58         <---------MYB46(3)  --------->AHL20(1)         --------->GLK1(2)                <---------ANAC58        --------->ALFIN1 ---->TOE2(3)           ------>ZmHOX2a(1)              <---------ANAC55(2)  <---------GLK1(1) ----->RAV1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC46     <---------AtMYB61- ----ANAC55(2)     <---------At4g35610                 --------->ANAC55(2)  --------->GLK1(1) -------   tgaattaattattgggccttaagctcctaatattctgaccttttgtatttcaaaatcatgtattccttgcataacaagaaatctgatggtggtgattcga  21315800                             ------>ZmHOX2a(1)                             --------------->AGL15                       --------->HSFB2a(1)                       <---------HSFB2a(1)                      <---------ARR11(3)                      --------->ARR11(3)                     --------->GLK1(1)                 ===================HOX2a_HOX2a                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)                --------->At4g35610                ====================HOX2a_HOX2a               --------->ARR11(3)                                     <---------AHL20(2)               --------->GLK1(2)                <-----------GT1      --------->AHL20(2)               <---------ARR11(3)          ----------->GT1           --------->ICU4               --------->ARR14(2)      --------->ZAT14          ----------->GT1 <----------DOF2               <---------ARR14(2)      <---------ZAT14   ----------->GT1        <---------DAG2 --------->DOF2<---------AGP1<---------------AGL15    --------->GLK1(2)  --------->AHL20(2) ---->GT1     <------ZmHOX2a(1)     ----------->GT1  <---------GLK1(2)--------->AHL20(2)   taaaaagagttcgataggatctgaaatcttcctacaagaagtaaactgtttaacagaatttgttaaatgtaataaataaaaacttttccatatttatcgg  21315900                   --------->ZAT2                   <---------At4g35610             <----------DOF2            <---------DAG2           --------->HSFB2a(1)   ------>MYB46(1)                          <-------PIF5           <---------HSFB2a(1)   ------>MYB83                             ------->PIF5   <---------AHL20(2)            -------->P                           --------->ZAT2             ----  <---------AHL20(2)      ------>ZmHOX2a(1)       >>>>>>>>>GATA-1     <---------ZAT2        ---------  --------->AHL20(2) <----------DOF2       ------------>CBF--------->TOE2(3)   ----------->GT1  -----   aaaaataaatggaacctttccagctttcctataccaactccaaattccaatagataaacattcttaaaccctagcaggggctcgataaaaactaaaaaat  21316000                                                                                                 ----                                                                                          --------->LBD16                                                                                         ------------                                                                                         <-----------             ---------->DOF2                                                             <-----------           --------->ANAC46                            <----------DOF2                   ------------           --------->ANAC58                           <---------ANAC58                  ------>MYB83       ------>MYB46(1)                         --------------------->WRI1               ------>MYB46(1)       ------>MYB83                            <----------DOF2                        --------->AtMYB61 ----->AHL20(2) <---------At4g35610    ------->TEIL---------->ID1  <----------DOF2 <-----------GT1 >AHL20(2) --------->ANAC58            -------->P<-----------RAV1(1)         --------->ICU4 --------- ---->AHL20(2)  --------->At4g35610--------->TOE2(3)  <---------ANAC58     ---------->DOF2<----------   aaaaaaaccaaacacgaaagctgcaaacatcgattaacatcaaccttctctttgttgctttcgctctcgctctatagcaaagatgaaacctccccaaaga  21316100 ------->GT1                                                              <---------MYB46(3) ----->AG                                                                <--------P              <--- ------AG --------->ZAT2                                                <-------GAMYB           ----- ------AGL1                                                          <---------ANAC46      <---------MYB52(1) ----->AGL1      <---------MYB52(1) --------->AHL20(2)            --------->ALFIN1    <---------ARR14(2) ->DOF2   <---------ZAT2 <-----------GT1  <-----------GT1        <-------GAMYB        --------->ARR14(2) -----AGL15     <---------RAP2.6(3) <---------AHL20(2)      <---------ZAT14<-------GAMYB<-------TEIL   ggttagaaccctagcagccgttttgttttactacttgtttaatttctctgttcgacctatagtatagggttgagggttgttaactccaaattcgttttgt  21316200                           --------->TOE2(3)                          <---------ANAC46                          <---------ANAC55(2)                   <---------ANAC58           --------->TOE2(3)         -------->P<---------ANAC58         ------->TEIL     --------->ANAC55(2)     --------->ARR11(3)   --------->ANAC58     <---------ARR11(3)   <---------ANAC58                                         <-----------GT1    <---------CCA1(2)     --------->ANAC58                                       --------->YAB1   --------->AHL20(1)     <---------ANAC58                                       -------->HAHB4   <---------ARR11(3)     <---------ANAC55(1)                                 --------->YAB1 <-------   <---------AHL20(1)    <-----------------------TaNAC69(2)                  <---------AHL20(2) --------GT1       <---------ANAC46                                         --------->AHL20(2)    --- ----->ID1----------->RAV1(2)      ----------------------->TaNAC69(2)  <------ZmHOX2a(1)   <---------At4g35610   cacaatatatctacctgaattgcttgttacgtaaactgttttgagtcttcacttcttcaatccaagtttaataggagatttaataatactctcttctgat  21316300                                                                                            <--------                                               <---------ZAT6                               <--------                                            <---------AtMYB61                               <--------                                            --------->ALFIN1                                <--------                                          <---------MYB46(3)                               <---------                                         <---------DEAR3(1)                                ----------                                         <---------AtMYB61                                 ----------                                      --------->ALFIN1                                    --------->ZAT18                                     ------->PIF5                               --------->ALFIN1                                     <-------PIF5                               ----------->HVH21                                    <---------ANAC46                           --------->At5g28300                                    <---------ANAC58                           <------NtERF2<--------                           <---------YAB1--------->ALFIN1                    <---------ANAC46 <---------AHL20(2)   --------->YAB1<---------bZIP60(2)                      --------->ALFIN1<------- --YAB1              <---------YAB1 <---------ANAC58                         <---------DEAR3(1) -------->GT1 <-----------GT1     <------ZmHOX2a(1)     --------->ALFIN1    <---------ABI4(1)<-------   tagttaatttcggttttatctgtatgattatgctcaggacgtggtggtggtgttagaggtggaagaggtttagccagaggcggtgaaggaagtgccgtaa  21316400                          <---------ANAC58                          <---------ANAC46                  ---------->DOF2               <------NtERF2               --------->RAP2.3(1)              <---------ERF1--------->ALFIN1              <---------RAP2.3(1)              <---------DEAR4(2)              <---------ATERF1(1)    --------->ALFIN1      <---------ANAC58   --------->At4g35610--------->ALFIN1 -------AGL15 ------>NtERF2--------->LBD16 -ANAC46      <---------ORA47(2) -ANAC58     <---------RAP2.3(2) -ANAC58     <---------DEAR3(1)                                  ----------->GT1          <---------ZAT6 --------AGL1<---------RAP2.6(2)                   ---------->DOF2        --------->MYB52(1)    ----- ------->AGL1--------->ATERF1(2)              ----------->GT1   <---------DEAR3(1)    ---------->DOF2 ------->AG  <---------ANAC46                 <---------ZAT6   <---------ORA47(1)  --------->ANAC58 -ANAC55(2)  <---------RAP2.3(3)        --------->HSFB2a(2)    --------->SPL7      --------->ANAC58<- --RAP2.6(3)--------->ATERF1(1)         <---------HSFB2a(2)  <---------SPL7<---------TOE2(3)  ------- --SPL7     <---------ABI4(1)         <---------ANAC46       ----------->HVH21   <------ZmHOX2a(1) --   gaggcagtggaagaggcggcgaaagtggccgtggaagagggcctggaagagttaaaagtgaatcggacggtggaattaagggaggaagcaaagtgttagt  21316500              ======================RAV            --------->ANAC58            --------->ANAC58        --------->ANAC58        --------->ANAC58    <---------ALFIN1   --------->ZAT14   <---------ZAT14  --------->AtMYB61      <-------GAMYB      --------->ARR14(2)                                      <  <---------ALFIN1      <---------MYB46(3)  <---------GLK1(2)                                       - --------->ANAC46       --------->MYB52(2)  <---------ARR14(2)                                      < --------->ANAC58       <-----------RAV1(1)<---------At4g35610                                      - --------->ANAC58<------ZmHOX2a(1)         --------->At4g35610                                      < ------>HVH21 <-----------RAV1(2)--------->DAG2                         ------>ZmHOX2a(1)           - --------bZIP60(1)  --------->ALFIN1  --------->DAG2                   <---------ANAC46    --------->YAB1 -->MYB52(2)--------->ANAC46    ---------->DOF2              --------->ARR11(3) <---------ATHB12   <- ------->bZIP60(1)  <---------ZAT6   ---------->DOF2         <---------ARR11(3) --------->ICU4     <-   gacaccacacaggcacgcaggagtgtttgttgccaaaagtaaagcagatgctcttgtaaccaagaacttagttcctggtgaaatcatttacaatgagaag  21316600  Previous    Next  AGI:  At5g52490.1    Description:  fibrillarin, putative. Identical to Putative rRNA 2'-O-methyltransferase fibrillarin 3 (FIB3) [Arabidopsis Thaliana] (GB:Q9FHB3); similar to FIB1 (FIBRILLARIN 1) [Arabidopsis thaliana] (TAIR:AT5G52470.1); similar to tobacco fibrillarin homolog [Nicotiana tabacum] (GB:BAE91898.1); contains InterPro domain Fibrillarin; (InterPro:IPR000692) Range:  from: 21316083    to: 21317465    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version