Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ICU4       --------->ICU4        <---------AHL20(2)       <---------YAB1        --------->AHL20(2)    <---------YAB1          --------->AHL20(2)    <---------AHL20(2)                               -- ------>HVH21       ----------->GT1               --------->AHL20(2) <---------------AGL15         <- ---->GT1 <---------YAB1<---------AHL20(2) <-------TEIL        <---------------AtSPL8          <-----   gacaatatgattattatacatattgttaaattttattctatgtgatacatatataaatgttttagcaagtacaaaacatggaaaatgtgagcgacttaca  19842000                             <---------DAG2                       <---------ARR14(2)     --------->TOE2(3) --------->ARR14(2) ------->YAB1         <---------GLK1(1)                                <----------DOF2 --------ICU4         --------->GLK1(1)                                <---------DAG2 ----YAB1    <---------YAB1  <----------DOF2        <---------------AtSPL8                 ----------   attataacatcaattctcattagcatttccgcttttactgaaaacaaaaacgagtgagtacaatttgtcttcccttttttttttttttggacacaaagta  19842100                                                     --------->REM1(1)                                                    ------>MYB83                                                    ------>MYB46(1)                       <---------ANAC46     <---------CCA1(2)  <-----------GT1  <---------DAG2         <---------ANAC58 <---------AHL20(2)<----------DOF2        <---------ANAC58                          --------->MYB46(3) >DOF2          ------>ZmHOX2a(1)        ---------->ID1                   <---------YAB1      -------   caatttatcttctatttcctcctttttgtgtaatttgtctcttgtcgtatcacctacattttcagcattggatgttataaatgcgaacaaactataatgt  19842200                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                          <---------AHL20(1)                                                                          --------->AHL20(1)                                                                       <---------ICU4                                                    --------->AHL20(2)--------->AHL20(2)             --------->At4g35610         <---------ICU4               <---------ATHB51          --------->ZAT2                 --------->YAB1               <---------AHL20(2)    <--------          <---------At4g35610           <---------AHL20(2)  ------>ZmHOX2a(2)            <---------YAB1          --------->At4g35610           <---------ATHB51  <---------ARR11(3)    <----------ID1      <-----------HVH21             --------->AHL20(2)    --------->ARR11(3)   --------->MYB59 ---->GT1 <---------ZAT2          ----------->GT1   <---------AHL20(2)--------->ICU4     <---------AHL20(2)   aaaaaacatgtcagcagcatcgggccatttcaaactatgtaaataatgaagaaattatatgatctattctaaataattaattaggccaaatattattcta  19842300                                       ------>ZmHOX2a(1)                                 <-----------GT1                <----------DOF2              ------------>CBF   <---------ICU4                *TSS           --------->ANAC58   --------->YAB1               <-----------GT1           --------->ANAC58  <---------AHL20(2)         <----------DOF2                <<<<<<<<<TBF1 -YAB1 <-----------HVH21    --------->AHL20(2)      <----------DOF2   <---------At4g35610   <--------   agtgaaaaatgtcacgctcaatttctcttatataataactccttcccttgaagcctttctttaactcttttcatcttccttcttccttcttcttctttaa  19842400                                                                                             <-------                                                                                             <-------             ---------->DOF2                                                    <---------ANAC58         ----------->RAV1(1)         ---------->DOF2                            <---------ANAC55(2)        <----------ID1<-----------HVH21                                         <---------ANAC58     --------->MYB52(1)          <----------ID1 --------->ZAT14     <-------GAMYB   ---------->ID1 --DOF2--------->DEAR3(2)  ----------->HVH21    <---------ZAT14    <---------MYB46(3)    <----------DOF2   acacaaaaaaccgacaaaagcctctgtctcggacagagacaaagaaacagaacagagcaagaacaatggctgttacacaaatacttgtcgtctttgcttc  19842500                                                                                   <-------TEIL                                                                              ------>ZmHOX2a(2)                                                                            --------->ARR11(3)                               <---------DEAR3(2)                           <---------ARR11(3)                             <------NtERF2                                ----------->HVH21                    <---------ZAT14     --------->ANAC58                --------->ANAC55(2)                    --------->ZAT14     --------->ANAC58                --------->ANAC46        ------>ZmHOX2a(1)  <---------ANAC58                             <---------ANAC55(2) --ANAC58 <---------ATHB12 <---------ANAC46                           <-----------GT1 --ANAC58 <---------YAB1   <---------ANAC58                       --------->AHL20(2)        ---------   tgcattactcctatcaatgttcttcactggcgtcgattccacaaggtatcgaaatgtttttgagtcaaatttatacgtgatctggttcatggaacaaagc  19842600                                                                                                    >                                                                                                    >                                                                                                    >                                                                      <---------ICU4             <---                                                                      --------->ATHB12          -----                                                                     --------->ICU4             -----                                                             --------->ANAC55(2)                <----                                                             <---------ANAC58                   <----                                 --------->ANAC58            <---------ANAC58                  <-----                                 --------->ANAC58 --------->ATHB12   <---------YAB1           <------                          ===========================================================================                  <-----------ARR10       <----------DOF2    <---------ANAC55(2)              -------    <---------ARR11(3)    <---------------AGL15<---------ANAC58    --------->YAB1             -------    --------->ARR11(3)  --------->At4g35610    <---------ANAC58    <---------ICU4             <------ ->DOF2          <---------CCA1(2)        <---------DAG2   <-----------GT1              <---------YAB1   attgaagttctcacttctcaaatctaagctaaaacaagaaaaccctttttcttgatttgaattacttgatcatgattacatggattttgtattatagatc  19842700 >>>>>>>>>AGL22 >>>>>>>>>AGL20 >>>>>>>>>AGL24 ------------AGL15 ------------>AGL3 ->ZmHOX2a(2)          <---------AHL20(1) -------------AGL3     --------->AHL20(2)            <-------TEIL -------------AGL2 <---------AHL20(2)               <------ZmHOX2a(2) -ZmHOX2a(2)   <----------DOF2          <---------GLK1(2) ---ARR11(3)<---------ARR11(3)     --------->YAB1  --------->AGP1 ============MADS_MADS <---------AHL20(2)          --------->ARR11(3)          <---------YAB1 -->ARR11(3)--------->ARR11(3)    <---------YAB1   <---------ARR11(3)     ----------->GT1 -->AGP1   <---------GLK1(1)--------->AHL20(2)    <---------GLK1(1)   --------->TGA1a          ------ ---AGP1   --------->GLK1(1)<---------AHL20(2)    --------->GLK1(1)   <---------TGA1a        <-------   taaatatggagggagttctttttattttatttttttatcatagattatgtagagatccatgtgatcaaacacaagtgtgttattagagtttattgaatga  19842800                                          ----------->GT1                                          <------MYB46(1)<---------YAB1                                          <---------ANAC46                                     <-----                                          <------MYB83 --------->YAB1                         <------                                         --------->MYB46(2)                       <-----------GT1   ----------->RAV1(1)                   <---------AtMYB61                <---------LBD16     <------MYB46(1) --->YAB1                                --------->MYB59 <---------AHL20(2)<---------ANAC46   ------- --WOX13(1)               --------->ICU4 --------->MYB111(1)         <---------ANAC46         <------MYB83   taatgcaacatttcaatgtgtattagcagtgattaagcgaggtttggtatattggttttataatttgagttgtgttttcgggtttaactaatgagttggt  19842900  Previous    Next  AGI:  At5g48900.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 20 precursor [Arabidopsis Thaliana] (GB:Q93WF1;GB:Q8LDB4;GB:Q9FI81); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to ripening-related pectate lyase [Mangifera indica] (GB:AAX88800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63802.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75298.1); contains InterPro domain Pectin lyase fold (InterPro Range:  from: 19842363    to: 19846318    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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