Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ICU4       <---------YAB1        <---------AHL20(2)       --------->ICU4        --------->AHL20(2)    <---------YAB1          --------->AHL20(2)    <---------AHL20(2)                               <- ------>HVH21       ----------->GT1               --------->AHL20(2) <---------------AGL15         -- ---->GT1 <---------YAB1<---------AHL20(2) <-------TEIL        <---------------AtSPL8          <-----   gacaatatgattattatacatattgttaaattttattctatgtgatacatatataaatgttttagcaagtacaaaacatggaaaatgtgagcgacttaca  19842000                             <---------DAG2                       --------->ARR14(2)     --------->TOE2(3) <---------ARR14(2) --------ICU4         --------->GLK1(1)                                <----------DOF2 ------->YAB1         <---------GLK1(1)                                <---------DAG2 ----YAB1    <---------YAB1  <----------DOF2        <---------------AtSPL8                 ----------   attataacatcaattctcattagcatttccgcttttactgaaaacaaaaacgagtgagtacaatttgtcttcccttttttttttttttggacacaaagta  19842100                                                     --------->REM1(1)                                                    ------>MYB83                                                    ------>MYB46(1)                       <---------ANAC46     <---------CCA1(2)  <-----------GT1  <----------DOF2        <---------ANAC58 <---------AHL20(2)<---------DAG2         <---------ANAC58                          --------->MYB46(3) >DOF2          ------>ZmHOX2a(1)        ---------->ID1                   <---------YAB1      -------   caatttatcttctatttcctcctttttgtgtaatttgtctcttgtcgtatcacctacattttcagcattggatgttataaatgcgaacaaactataatgt  19842200                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                          <---------AHL20(1)                                                                          --------->AHL20(1)                                                                       <---------ICU4                                                    <---------AHL20(2)<---------AHL20(2)             --------->At4g35610         --------->YAB1               <---------ATHB51          <---------At4g35610            <---------ICU4               --------->ICU4        <--------          <---------ZAT2                <---------AHL20(2)  ------>ZmHOX2a(2)            <---------YAB1          --------->At4g35610           <---------ATHB51  <---------ARR11(3)    <----------ID1      <-----------HVH21             --------->AHL20(2)    --------->ARR11(3)   --------->MYB59 ---->GT1 --------->ZAT2          ----------->GT1   --------->AHL20(2)--------->AHL20(2) <---------AHL20(2)   aaaaaacatgtcagcagcatcgggccatttcaaactatgtaaataatgaagaaattatatgatctattctaaataattaattaggccaaatattattcta  19842300                                       ------>ZmHOX2a(1)                                 <-----------GT1                <----------DOF2              ------------>CBF   <---------ICU4                *TSS           --------->ANAC58   --------->YAB1               <-----------GT1           --------->ANAC58  <---------AHL20(2)         <----------DOF2                <<<<<<<<<TBF1 -YAB1 <-----------HVH21    --------->AHL20(2)      <----------DOF2   <---------At4g35610   <--------   agtgaaaaatgtcacgctcaatttctcttatataataactccttcccttgaagcctttctttaactcttttcatcttccttcttccttcttcttctttaa  19842400                                                                                             <-------                                                                                             <-------             ---------->DOF2                                                    <---------ANAC55(2)         ----------->RAV1(1)         ---------->DOF2                            <---------ANAC58        <----------ID1<-----------HVH21                                         <---------ANAC58     --------->MYB52(1)          <----------ID1 <---------ZAT14     <-------GAMYB   ---------->ID1 --DOF2--------->DEAR3(2)  ----------->HVH21    --------->ZAT14    <---------MYB46(3)    <----------DOF2   acacaaaaaaccgacaaaagcctctgtctcggacagagacaaagaaacagaacagagcaagaacaatggctgttacacaaatacttgtcgtctttgcttc  19842500                                                                                   <-------TEIL                                                                              ------>ZmHOX2a(2)                                                                            --------->ARR11(3)                               <---------DEAR3(2)                           <---------ARR11(3)                             <------NtERF2                                ----------->HVH21                    --------->ZAT14     --------->ANAC58                --------->ANAC46                    <---------ZAT14     --------->ANAC58                <---------ANAC55(2)        ------>ZmHOX2a(1)  <---------ANAC58                             --------->ANAC55(2) --ANAC58 <---------ATHB12 <---------ANAC46                           <-----------GT1 --ANAC58 <---------YAB1   <---------ANAC58                       --------->AHL20(2)        ---------   tgcattactcctatcaatgttcttcactggcgtcgattccacaaggtatcgaaatgtttttgagtcaaatttatacgtgatctggttcatggaacaaagc  19842600                                                                                                    >                                                                                                    >                                                                                                    >                                                                      --------->ATHB12           <---                                                                      <---------ICU4            -----                                                                     --------->ICU4             -----                                                             <---------ANAC55(2)                <----                                                             --------->ANAC55(2)                <----                                 --------->ANAC58            <---------ANAC58                  <-----                                 --------->ANAC58 --------->ATHB12   <---------YAB1           -------                          ===========================================================================                  <-----------ARR10       <---------DAG2     <---------ANAC58                 <------    <---------ARR11(3)    <---------------AGL15<---------ANAC58    --------->YAB1             <------    --------->ARR11(3)  --------->At4g35610    <---------ANAC58    <---------ICU4             ------- ->DOF2          <---------CCA1(2)        <----------DOF2  <-----------GT1              <---------YAB1   attgaagttctcacttctcaaatctaagctaaaacaagaaaaccctttttcttgatttgaattacttgatcatgattacatggattttgtattatagatc  19842700 >>>>>>>>>AGL24 >>>>>>>>>AGL22 >>>>>>>>>AGL20 ------------AGL15 ->ZmHOX2a(2) ------------>AGL3     <---------AHL20(1) -------------AGL3     --------->AHL20(2)            <-------TEIL -------------AGL2 <---------AHL20(2)               <------ZmHOX2a(2) -ZmHOX2a(2)   <----------DOF2          <---------GLK1(2) -->AGP1   <---------GLK1(1)<---------AHL20(2)     --------->ARR11(3) ============MADS_MADS <---------AHL20(2)          <---------ARR11(3)          <---------YAB1 ---ARR11(3)--------->ARR11(3)     --------->YAB1  --------->AGP1         ----------->GT1 ---AGP1   --------->GLK1(1)--------->AHL20(2)    --------->GLK1(1)   <---------TGA1a          ------ -->ARR11(3)<---------ARR11(3)    <---------YAB1  <---------GLK1(1)   --------->TGA1a        <-------   taaatatggagggagttctttttattttatttttttatcatagattatgtagagatccatgtgatcaaacacaagtgtgttattagagtttattgaatga  19842800                                          <---------ANAC46                                          <------MYB46(1)                                          ----------->GT1<---------AHL20(2)                    <-----                                          <------MYB83 --------->YAB1                         <------                                         --------->MYB59 <---------YAB1           <-----------GT1   ----------->RAV1(1)                   <---------AtMYB61                 <---------ANAC46   <------MYB46(1) --->YAB1                                --------->MYB46(2)               <---------LBD16     ------- --WOX13(1)               --------->ICU4 --------->MYB111(1)         <---------ANAC46         <------MYB83   taatgcaacatttcaatgtgtattagcagtgattaagcgaggtttggtatattggttttataatttgagttgtgttttcgggtttaactaatgagttggt  19842900  Previous    Next  AGI:  At5g48900.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 20 precursor [Arabidopsis Thaliana] (GB:Q93WF1;GB:Q8LDB4;GB:Q9FI81); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to ripening-related pectate lyase [Mangifera indica] (GB:AAX88800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63802.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75298.1); contains InterPro domain Pectin lyase fold (InterPro Range:  from: 19842363    to: 19846318    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.