Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->YAB1                 --------------->AGL15                 <---------------AGL15      <---------------AtSPL3     <---------STY1(2)                      <---------------AtSPL8     --------->STY1(2)        <---------ZAT14                      --------->YAB1       --------->ANAC55(2)    --------->MYB59 --------->ATHB51----------------------->TaNAC69(2)                  <---------ANAC55(2) ----GT1      <-----------GT1 --------->ZAT14   --------->SPL7    <-------TEIL        <-----------GT1   tatagttagctagttttgaccataatttgtagtatagtagtatgtgttagtacgtcgatgtgtcaacattcatgttcaaacttgcatattacatgttatt  18772100                                                                                             <-------                                                                                    ---------->DOF2                                                                                   <---------WRKY45                                                                                   <---------WRKY12                                                                                   <---------WRKY38(1)                                                                                  <<<<<<<<<<WRKY40                                                                                  <<<<<<<<<<WRKY18                                                                                  --------->WRKY18(1)                                                                     --------->AtLEC2     <----------DOF2                                  --------->YAB1         ------>ZmHOX2a(1)        <<<<<<<<<<WRKY62                        <-----------GT1                ----------->RAV1(2)  --------->ATHB12 --------          ------>ZmHOX2a(1)      <---------YAB1    ------->TEIL  <-----------GT1 <-----------HVH21   gacatgttcttcctgtagtatacaaattacacattttcataacttcatatatgaatctcctgcaattttacctgcaaactattggtcaaagccttttaaa  18772200                    ------->GAMYB                   --------->MYB46(3)                   <------------AtMYB77                 --------->MYB52(1)               <---------MYB52(2)         --------->ANAC58         --------->ANAC58                                                                        ----       ---------->DOF2                                   --------->ARR14(2)              --------->ATHB12      <------ZmHOX2a(2)                    <---------YAB1--------->ZAT14                <---------YAB1     --------->ARR11(3)         <-----------GT1          <---------ARR14(2)             --------->ICU4     <---------ARR11(3)    --------->AHL20(1)            <---------ZAT14              --------->YAB1 --AHL20(2) --------->ZAT18<---------ARR11(3)     --------->ETT(2)            --------->ANAC46 <----- ->AHL20(2) <---------ZAT18<---------AHL20(1)     <---------ETT(2)         --------->ZAT14     ------   tgggctagatcaagcccactaactgccaaaatattcacttcatttattcttgtagacagtatacacattatcaaatgtacacacattttcatgatttgat  18772300             --------->ANAC58             --------->ANAC46     <---------YAB1     <---------AHL20(2)                                   --------->LBD16   <---------CCA1(1)                                     <---------LBD16  <---------ARR11(3)                        <----------DOF2  --------->ARR11(3)                       --------->TOE2(3)      --------->YAB1 -->ZmHOX2a(2)       <-----------GT1   <----------DOF2 --------->MYB52(1) ----ARR11(3)--------->AtLEC2    <---------ANAC58      -------->P<---------ATHB12 --->ARR11(3)--------->ANAC58    <---------ANAC58      <---------At5g28300     ---------->DOF2-------   cttagatattatttcatgcaattttagcctctattgctaggctttcctttaaaaacttaccgggctaatcaaaacctcttaaaaagcctccatatcaaaa  18772400                                                                                       --------->DAG2                                                                                      ===============                                                                                   <------ZmHOX2a(1)                                                                                  --------->LBD16                                         <---------ANAC58                 <-----------------AGL1                                         <---------ANAC46                 <---------At5g28300                                         <---------ANAC58                <---------WRKY18(1)                                        <------NtERF2                   --------->WRKY38(1)                                      --------->ALFIN1                  --------->WRKY12        -----                                --------->ARR14(2)                      --------->WRKY45       >>>>>>  <---------ATHB12           --------->AHL20(2)                       <----------DOF2 ---------->DOF2 --->DOF2     --------->TOE1(1) <---------ARR14(2)     ----------->TGA1 ----------->HVH21      <-----   gcccatcaatgttacctcgaacttagtggaatcaaatacggtgtcgtttgatagaaaatgacgaaactagccctttgaccgttcaggaaaaagtcttccg  18772500                                 ----------->HVH21                               <---------At4g35610                               --------->ZAT2                               <---------ZAT2                               --------->At4g35610                               <-------GAMYB                               <------NtERF2                              <---------DEAR3(2)                             <---------RAP2.3(3)                             --------->ETT(1)                             <---------DREB2C(2)                             <---------At1g77200                             <---------RAP2.6(2)                             <---------ANAC46                             <---------DEAR3(1)                            --------->RAP2.6(3)                           --------->REM1(2)                          --------->ALFIN1                          ----------->HVH21                        <---------ANAC55(2)                        --------->ANAC55(2)                        ===============MYC_MYB                        <---------ANAC55(1)                        <---------ANAC58                                                     <-------                        --------->TGA1a                                                  <---------GLK1(2)                        --------->O2                                                     <---------ARR14(2)                        <---------bZIP60(2)                                             <------ZmHOX2a(1)      --------->MYB52(1)<---------TGA1a                                        <---------DEAR3(1)  --  ----------->TBP       <---------O2  *TSS                                ---------->DOF2--------->ARR14(2) =================================bZIP_DOF                   --------->RAP2.6(3)   <---------MYB46(3) ------>RAV1(1)         <---------ANAC58                    --------->MYB52(1) --------->ZAT18     -- >>>>AtTINY2======================bZIP_DOF             <-----------------AGL1 --------->ALFIN1    <-- ----ETT(1) ---------->DOF2<-----------HVH21  <------ZmHOX2a(1)   --------->WOX13(1)<------NtERF2<---   acatataaaaacggagaagcgagaagacgtgtcggctgagaggtaagaggaagagagactcaaaacggcaattagcgaaagtgggcgggaggattctttt  18772600                                                                               --------->ZAT14                                                                               <---------REM1(2)                                                                             --------->ANAC46                                                                             --------->bZIP60(2)                                                                           <---------ALFIN1                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                       <---------SPL7         -------                                                                     <------NtERF2            -------                                                                    ------>NtERF2             -------       <----------DOF2                                             <---------DEAR3(1)  <-----------RAV1(2)  ------>NtERF2                                                    --------->ANAC46  ------->TEIL --------->DEAR3(1)                                                --------->DEAR3(1)----------->RAV1(1) ---DOF2                                                         <---------ATERF1(1)--------->ANAC46 ------->LBD16                                                  --------->DEAR3(1)--------->ANAC58 ---->NtERF2                       --------->LBD16              --------->ANAC46  --------->ANAC58 <- -------LBD16                    <---------LBD16                ----------->HVH21 --------->ANAC46--- ------LBD16             ------>ZmHOX2a(1)      <---------GLK1(2)------>NtERF2<-----------HVH21 -----   ccggcgactcttttatgtcttctcttcctcttcgctccggtgagaagatggaatcgccttccatctccgacgccgttccacttcacgcaccagaagacgc  18772700                 ------->GAMYB                 --------->ANAC58                 --------->TOE2(3)                 --------->ANAC46               ------>MYB46(1)         <-----------GT1     <---------GLK1(2)     <-----------ARR10     <---------ARR14(2)     --------->ARR14(2)------->GAMYB   --------->LBD16--------->LBD16                                                                 <-- --------->LBD16 --------->RAP2.6(2)                                                            ----- <---------At4g35610  --------->MYB46(3)                                                      ------- <---------LBD16--------->MYB46(3)                                 <---------At4g35610        <------ -->ANAC46     -------->P   <---------MYB52(1)                  ------>ZmHOX2a(1)        <---------ANAC46 -->ANAC58     ------>MYB83<-----------HVH21                   --------->TOE2(2)        <---------LBD16 -->ANAC58<-----------GT1  <-------GAMYB                       --------->TOE1(2)        --------->HSFB2a(2) --------DEAR3(1)--------->ANAC58                           --------->ARR14(2)          <---------HSFB2a(2) --->NtERF2   --------->MYB52(1)                            <---------ARR14(2)    <---------DOF5.7(2) ------>HVH21 <---------ALFIN1 <---------ANAC55(2)      --------->ANAC55(2)     --------->DOF5.7(2)   gaccgcggatttttcccaaccgcaatcgccgttacatgaagttgattcgtttccagttactgaatcctccgatgatgttgttgttaacgtctcggagata  18772800                                                                   <---------LBD16                                                                --------->ARR11(3)                                                      ================HOX2a_HOX2a                                                      ------>ZmHOX2a(2)                                                    <---------ARR14(2)                                                    --------->ARR14(2)      --------->ARR14(2)                                                   ===============HOX2a_HOX2a <---------LBD16                    <---------YAB1                 <------ZmHOX2a(1)   <---------ANAC46                    --------->ICU4                 =====================HOX2a_HOX2a           <-----------HVH21                   <---------ANAC46 <---------ARR11(3)   <---------AHL20(2) --------->ARR11(3)       --------->DEAR3(1)<------ZmHOX2a(2)          <-------- -------MYB59     --------->YAB1          --------->MYB52(1)   <------ZmHOX2a(1)--------->LBD16 ---->MYB52(1)   <---------YAB1  <-------PIF5 <------NtERF2 --------->YAB1  <---------ARR14(2) -->ARR14(2)     --------->ICU4  ------->PIF5<---------RAP2.3(1)<-----------HVH21<-------GAMYB ---ARR14(2)   <---------At4g35610      ---------->DOF2    <------ZmHOX2a(2)--------->GLK1(2)     <--   ccgaatttatctccgtctgatgatgattttgaccacgagcgaaatagcggcgaggatcgcgatcaggatcacggcgagaatccggttgagaccgatggtg  18772900                               --------->ATHB12                              <------ZmHOX2a(2)                              <---------YAB1      --------->YAB1                             --------->ARR11(3)  <---------YAB1                       --------->YAB1   --------->ANAC58                                   --------->ICU4 -AtMYB61<---------ATHB12    <---------ARR11(3)  --------->ICU4                     ------>ZmHOX2a(2) -------MYB46(3)--------->At4g35610     --------->ANAC58   <---------YAB1--------->At4g35610   ttgttgttccaatcgatgagttgaatcagaagatcattagacaggcaagtgatcatcaatttctattgatgaattggctgaattgatcgagcaattttgg  18773000  Previous    Next  AGI:  At5g46250.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to putative RNA-binding protein homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD87502.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 18772538    to: 18775508    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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