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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
--------------->
AGL15
<---------------
AGL15
<---------------
AtSPL3
<---------
STY1(2)
<---------------
AtSPL8
--------->
STY1(2)
<---------
ZAT14
--------->
YAB1
--------->
ANAC55(2)
--------->
MYB59
--------->
ATHB51
----------------------->
TaNAC69(2)
<---------
ANAC55(2)
----
GT1
<-----------
GT1
--------->
ZAT14
--------->
SPL7
<-------
TEIL
<-----------
GT1
tatagttagctagttttgaccataatttgtagtatagtagtatgtgttagtacgtcgatgtgtcaacattcatgttcaaacttgcatattacatgttatt
18772100
--------
---------->
DOF2
<---------
WRKY45
<---------
WRKY12
<---------
WRKY38(1)
<<<<<<<<<<
WRKY40
<<<<<<<<<<
WRKY18
--------->
WRKY18(1)
--------->
AtLEC2
<----------
DOF2
--------->
YAB1
------>
ZmHOX2a(1)
<<<<<<<<<<
WRKY62
<-----------
GT1
----------->
RAV1(2)
--------->
ATHB12
<-------
------>
ZmHOX2a(1)
<---------
YAB1
------->
TEIL
<-----------
GT1
<-----------
HVH21
gacatgttcttcctgtagtatacaaattacacattttcataacttcatatatgaatctcctgcaattttacctgcaaactattggtcaaagccttttaaa
18772200
------->
GAMYB
--------->
MYB46(3)
<------------
AtMYB77
--------->
MYB52(1)
<---------
MYB52(2)
--------->
ANAC58
--------->
ANAC58
----
---------->
DOF2
<---------
ARR14(2)
--------->
ATHB12
<------
ZmHOX2a(2)
<---------
YAB1
--------->
ARR14(2)
<---------
YAB1
--------->
ARR11(3)
<-----------
GT1
--------->
ZAT14
--------->
ICU4
<---------
ARR11(3)
--------->
AHL20(1)
<---------
ZAT14
--------->
YAB1
->
AHL20(2)
--------->
ZAT18
<---------
ARR11(3)
--------->
ETT(2)
--------->
ANAC46
<-----
--
AHL20(2)
<---------
ZAT18
<---------
AHL20(1)
<---------
ETT(2)
--------->
ZAT14
------
tgggctagatcaagcccactaactgccaaaatattcacttcatttattcttgtagacagtatacacattatcaaatgtacacacattttcatgatttgat
18772300
--------->
AtLEC2
--------->
ANAC58
<---------
YAB1
<---------
AHL20(2)
--------->
LBD16
<---------
CCA1(1)
<---------
LBD16
<---------
ARR11(3)
<----------
DOF2
--------->
ARR11(3)
--------->
TOE2(3)
--------->
YAB1
-->
ZmHOX2a(2)
<-----------
GT1
<----------
DOF2
--------->
MYB52(1)
----
ARR11(3)
--------->
ANAC46
<---------
ANAC58
<---------
At5g28300
---------->
DOF2
--->
ARR11(3)
--------->
ANAC58
<---------
ANAC58
-------->
P
<---------
ATHB12
-------
cttagatattatttcatgcaattttagcctctattgctaggctttcctttaaaaacttaccgggctaatcaaaacctcttaaaaagcctccatatcaaaa
18772400
--------->
DAG2
===============
<------
ZmHOX2a(1)
--------->
LBD16
<---------
ANAC58
<---------
At5g28300
<---------
ANAC58
<-----------------
AGL1
<---------
ANAC46
<---------
WRKY18(1)
<------
NtERF2
----------->
HVH21
--------->
ALFIN1
--------->
WRKY45
-----
<---------
ARR14(2)
--------->
WRKY12
<-----
<---------
ATHB12
--------->
AHL20(2)
<----------
DOF2
---------->
DOF2
--->
DOF2
--------->
TOE1(1)
--------->
ARR14(2)
----------->
TGA1
--------->
WRKY38(1)
>>>>>>
gcccatcaatgttacctcgaacttagtggaatcaaatacggtgtcgtttgatagaaaatgacgaaactagccctttgaccgttcaggaaaaagtcttccg
18772500
----------->
HVH21
<---------
At4g35610
--------->
ZAT2
<---------
ZAT2
--------->
At4g35610
<-------
GAMYB
<------
NtERF2
<---------
DEAR3(2)
<---------
RAP2.3(3)
--------->
ETT(1)
<---------
DREB2C(2)
<---------
At1g77200
<---------
ANAC46
<---------
RAP2.6(2)
<---------
DEAR3(1)
--------->
RAP2.6(3)
<-----------
HVH21
--------->
ALFIN1
----------->
HVH21
--------->
ANAC55(2)
===============
MYC_MYB
<---------
ANAC58
<---------
ANAC55(2)
<---------
ANAC58
<-------
<---------
ANAC55(1)
<---------
GLK1(2)
<---------
O2
<---------
ARR14(2)
--------->
O2
*
TSS
<------
ZmHOX2a(1)
--------->
MYB52(1)
--------->
TGA1a
<---------
DEAR3(1)
--
----------->
TBP
<---------
TGA1a
---------->
DOF2
--------->
ARR14(2)
=================================
bZIP_DOF
--------->
RAP2.6(3)
<---------
MYB46(3)
------>
RAV1(1)
<---------
bZIP60(2)
--------->
MYB52(1)
--------->
ZAT18
--
----
ETT(1)
======================
bZIP_DOF
<-----------------
AGL1
--------->
ALFIN1
<--
>>>>
AtTINY2
---------->
DOF2
--------->
REM1(2)
<------
ZmHOX2a(1)
--------->
WOX13(1)
<------
NtERF2
<---
acatataaaaacggagaagcgagaagacgtgtcggct
gagaggtaagaggaagagagactcaaaacggcaattagcgaaagtgggcgggaggattctttt
18772600
--------->
ZAT14
<---------
REM1(2)
--------->
ANAC46
--------->
bZIP60(2)
<---------
ALFIN1
<---------
ARR14(2)
--------->
ARR14(2)
<---------
SPL7
-------
<------
NtERF2
-------
------>
NtERF2
-------
<----------
DOF2
<---------
DEAR3(1)
<-----------
RAV1(2)
------>
NtERF2
--------->
ANAC46
------->
TEIL
--------->
DEAR3(1)
--------->
DEAR3(1)
----------->
RAV1(1)
---
DOF2
<---------
ATERF1(1)
--------->
ANAC46
------->
LBD16
--------->
DEAR3(1)
--------->
ANAC58
---->
NtERF2
--------->
LBD16
--------->
ANAC46
--------->
ANAC58
<-
-------
LBD16
<---------
LBD16
----------->
HVH21
--------->
ANAC46
---
------
LBD16
------>
ZmHOX2a(1)
<---------
GLK1(2)
------>
NtERF2
<-----------
HVH21
-----
ccggcgactctttt
atgtcttctcttcctcttcgctccggtgagaagatggaatcgccttccatctccgacgccgttccacttcacgcaccagaagacgc
18772700
------->
GAMYB
--------->
ANAC58
--------->
TOE2(3)
--------->
ANAC46
------>
MYB46(1)
<-----------
GT1
<---------
GLK1(2)
<-----------
ARR10
<---------
ARR14(2)
--------->
ARR14(2)
------->
GAMYB
--------->
LBD16
--------->
LBD16
<--
--------->
LBD16
--------->
RAP2.6(2)
-----
<---------
At4g35610
--------->
MYB46(3)
-------
<---------
LBD16
--------->
MYB46(3)
<---------
At4g35610
<------
-->
ANAC46
-------->
P
<---------
MYB52(1)
------>
ZmHOX2a(1)
<---------
ANAC46
-->
ANAC58
------>
MYB83
<-------
GAMYB
--------->
TOE2(2)
<---------
LBD16
-->
ANAC58
<-----------
GT1
<-----------
HVH21
--------->
TOE1(2)
--------->
HSFB2a(2)
--------
DEAR3(1)
--------->
ANAC58
<---------
ARR14(2)
<---------
HSFB2a(2)
--->
NtERF2
--------->
MYB52(1)
--------->
ARR14(2)
<---------
DOF5.7(2)
------>
HVH21
<---------
ALFIN1
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
DOF5.7(2)
gaccgcggatttttcccaaccgcaatcgccgttacatgaagttgattcgtttccagttactgaatcctccgatgatgttgttgttaacgtctcggagata
18772800
<---------
LBD16
--------->
ARR11(3)
================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
===============
HOX2a_HOX2a
<---------
LBD16
<---------
YAB1
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
ICU4
=====================
HOX2a_HOX2a
<-----------
HVH21
<---------
ANAC46
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
DEAR3(1)
<------
ZmHOX2a(2)
<--------
-------
MYB59
--------->
YAB1
--------->
MYB52(1)
<------
ZmHOX2a(1)
--------->
LBD16
---->
MYB52(1)
<---------
YAB1
------->
PIF5
<------
NtERF2
--------->
YAB1
<---------
ARR14(2)
-->
ARR14(2)
--------->
ICU4
<-------
PIF5
<---------
RAP2.3(1)
<-----------
HVH21
<-------
GAMYB
---
ARR14(2)
<---------
At4g35610
---------->
DOF2
<------
ZmHOX2a(2)
--------->
GLK1(2)
<--
ccgaatttatctccgtctgatgatgattttgaccacgagcgaaatagcggcgaggatcgcgatcaggatcacggcgagaatccggttgagaccgatggtg
18772900
--------->
ATHB12
<------
ZmHOX2a(2)
<---------
YAB1
--------->
YAB1
--------->
ARR11(3)
<---------
YAB1
--------->
YAB1
--------->
ANAC58
--------->
ICU4
-
AtMYB61
<---------
ATHB12
<---------
ARR11(3)
--------->
ICU4
------>
ZmHOX2a(2)
-------
MYB46(3)
--------->
At4g35610
--------->
ANAC58
<---------
YAB1
--------->
At4g35610
ttgttgttccaatcgatgagttgaatcagaagatcattagacag
gcaagtgatcatcaatttctattgatgaattggctgaattgatcgagcaattttgg
18773000
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AGI:
At5g46250.1
Description:
RNA recognition motif (RRM)-containing protein. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to putative RNA-binding protein homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD87502.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630)
Range:
from: 18772538
to: 18775508
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.