Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ----------->RAV1(1)       --------->ANAC46       <---------ALFIN1      --------->LBD16     --------->ANAC58     --------->ANAC46     --------->ANAC58    <---------LBD16   ------>ZmHOX2a(2)  <------ZmHOX2a(2) <---------ARR14(2)                                                                  --------->LBD16 --------->ARR14(2)                         --------->ANAC46                       <---------LBD16 --------DEAR3(2)                     ----------->RAV1(1)                       --------->GLK1(1) ------>ETT(1)                    <---------WOX13(1)                            <---------GLK1(1) -------ANAC46                  --------->ATHB12           ---------->DOF2     --------->ARR14(2) ---NtERF2                  <---------WRKY38(1)        ------------------------>ANAC81              - -------HVH21               <---------WRKY12--------->ANAC58                   <---------ARR14(2)   - -AtMYB61                 <-----------HVH21 --------->ANAC58                  <------ZmHOX2a(1)     -   tcggatcccgcaccatgggctcgagaccagtcaaagattgccacataagcaagagaggcccaaaagaagagaagcccataggataccccgagttgatagt  12599700                                                                                      <---------LBD16                                                                                ---------->DOF2                                                                               <---------REM1(1)                                                                               --------->ALFIN1                                                                         <---------RAP2.6(3)                                                                         =========================RAV              <---------LBD16                                            ----------->RAV1(1)              --------->TOE1(2)                                          ------>NtERF2<-----------RAV1(2)           <---------WRKY18(1)                            <---------bZIP60(2)<---------At4g35610          --------->WRKY38(1)                           --------->ZAT18 ----------->HVH21          --------->WRKY12               ---------->DOF2--------->ZAT14 --------->RAP2.3(3)          ----------->HVH21             <---------WRKY12<---------ZAT14 --------->DREB2C(2)       --------->ALFIN1         --------->GLK1(2)  --------->LBD16      --------->ETT(2)     <---------ANAC46      <-------TEIL <---------WRKY38(1) --------->ALFIN1 --------->At4g35610 -------->ANAC58          --------->CCA1(2)       --------->ANAC46      <---------ETT(1) -------->ANAC58         <---------ARR14(2)      <---------LBD16       --------->DEAR3(2)<------ZmHOX2a(1) -------->ANAC46         --------->ARR14(2)    -------->P <---------ANAC46 <-----------RAV1(2)   acaagcgaggtgttgacctgggaagtggatacagaatcaaggtcaaagttacccggagtgaagtgtcgaatgggccgacaggtgaagcccaggaagtctg  12599800                                                                                                 <---                         ----------->GT1                                                 <---------TOE2(3)                --------->HSFB2a(1)                                                   --------->AHL20(2)                <---------HSFB2a(1)                      <---------YAB1<---------ANAC46<---------AHL20(2)               <---------TOE1(2)                         <---------TOE2(3)            <---------AHL20(2)   gagtcaattcaaattcgaacgtttgaatagataattcgaaaactgaaacgaatacatttaagatagaataattttgtgtaaatgggaatttaatgtattc  12599900                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      <---------ANAC55(2)                                      --------->ANAC58         --------->ANAC58                  ---------->DOF2     --------->ANAC55(2)      --------->ANAC55(2)                 <---------WRKY38(1)  --------->ANAC58         --------->ANAC58         <---------ATHB51             --------->ANAC46         --------->ANAC46         <---------AHL20(2)  ---------->DOF2                --------->ZAT14 ---------->DOF2      --------->AHL20(2)  --------->AtLEC2                  <---------ARR14(2) <---------ANAC46<---------WRKY12     --------->ANAC55(1)   --------->ARR14(2)                   ---- -------DOF2   <-----------HVH21 <----------ID1         --------->ANAC46 ------>ZmHOX2a(1)  ---------   tttgggtataaattatgggtcaaaggccatgtaaagggacacgcatttttgggcaaacacactatacgcattttcctacaaagctcatagttttctcaat  12600000                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               --------->ANAC46                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <---------ANAC58                                                                   <---------ANAC46                                                                   <---------ANAC58    *TSS <--------                                     --------->KAN4(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                     --------->YAB1      --------->AHL20(2)    <---------ETT(1)                                    <---------KAN4(1)    <---------AHL20(2) --------->ARR14(2)                                    --------->KAN4(1) --------->AHL20(2)    <---------ARR14(2)    --------->WOX13(1)       ------>ZmHOX2a(1)--------->ZAT6     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  ------------>CBF        ---------->ID1  ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->YAB1    <---------HSFB2a(2) <---------KAN4(2) <---------AHL20(2)     xxxxxxxxxxxxxxxx>smallRNA(s) --->CBF       --------->HSFB2a(2)--------->YAB1     --------->AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s)   agtcatcaatctattttctagtacatttgtcctcaagaataatccttctcactaaataaataaatacttgagtgtgtgaatccgacatccacagacatgg  12600100                                                                                 ------>ZmHOX2a(2)                                                                   --------->LBD16                                                                   <---------------AGL15                                                                   --------------->AGL15                                                                  <-----------------AGL1                              <---------AHL20(2)                  ----------------->AGL2                              --------->AHL20(2)       --------->ANAC55(2)       ==============HOX2a_HOX2a                     --------->ANAC46                  <---------ANAC55(2)  <--------P                     --------->ANAC58               <---------ARR11(3)   <---------YAB1                   --------->TOE1(2)                <---------ARR14(2) --------->YAB1     <---------GLK1(1)                ------>MYB46(1)                     --------->ARR14(2) <---------ICU4     --------->CCA1(2)                ------>MYB83 --------->AHL20(2)    <------ZmHOX2a(1)  <---------ATHB51   <---------ARR14(2)               --------->WOX13(1)           --------->At4g35610   ----------------->AGL1 --------->ARR14(2)             --------->MYB46(3)  <---------WOX13(1)=====================================HOX2a_HOX2a          ------>ZmHOX2a(1)--------->ARR11(3)      =====================HOX2a_HOX2a     <------ZmHOX2a(1)      <-----------GT1--------->ANAC58       <---------At4g35610  ==============================HOX2a_HOX2a -TGA1a  <---------MYB59   <---------ARR11(3)  <-------TEIL      ------>ZmHOX2a(2)  ---------->DOF2   gtttgttttttcctaaccaatccaaggaagatttaattggttttgcagatgcaggatacttatctgatccccataatggtagatcgcaaaggatatgtct  12600200           <-------TEIL                                            --------->AtLEC2         <---------SPL7                                          <---------ICU4     --------->LBD16                                            <---------ATHB12    <---------ANAC58         <----------DOF2           <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ALFIN1       --------->ZAT18             <---------ARR11(3)    <---------ANAC46       <---------ZAT18            <---------ALFIN1    <---------ARR11(3)    <----    <---------ANAC58     ---------->ID1               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        -----   <---------LBD16   <---------ANAC58               <---------ALFIN1      --------->ARR11(3)    <---- ------->MYC3        <---------ANAC58               ----------->RAV1(1)  <---------RVE1(1) ------->TEIL <-------MYC3 <---------At4g35610                --------->ANAC46--------->YAB1<-----------GT1  -----   tcacatgcgggggtacagctatttcttggcgctctatgaagcaaactatttcagccacatcttctaatcatgcagagattttagcaattcatgaagctag  12600300                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                            <-----------GT1                           <---------ZAT18                    <-------TEIL                   <------ZmHOX2a(2)                  <---------ARR14(2)                                                      xxxxxxxxxxx                  --------->ARR11(3)                                                  xxxxxxxxxxxxxxx                  --------->AGP1                                                   <xxxxxxxxxxxxxxxxx                  <---------ARR11(3)                                              <---------------AtSPL8                  --------->ARR14(2)                                            --------->ICU4                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------ATHB51                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             ---------->DOF2--------->YAB1        <---------AtLEC2   --------->ZAT18                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxsmallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AtLEC2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->At4g35610 ----------->ARR10<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -----ZAT2    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ------->TEIL       ----------->RAV1(1) ---->ZAT2    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ctgtgagtgtgtatggctaagatccatagttcaccatatacaagaagactgtggtatgtatgcagggaaaaagactccaacaattatgtacgaagacaat  12600400                                                                                                   xx                                                                                                  <xx                                                                                                  <--                                                                                                  xxx                                                                                                 <xxx                                                                                                 <---                                                                                               <-----                                                                                             <xxxxxxx                                                                                           <xxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               ----------                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxx                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             ---------->DOF2                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                   xxxxxxxxxxxxxxx                                       xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx                              --------->TOE2(3)---------->DOF2                    <---------ARR14(2)                             <xxxxxxxxxxxxxxxxsmallRNA(i)  ------>MYB46(1)        <---------ARR11(3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ANAC58 xxxx                            <-------TEIL  <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->ANAC58xxxxx                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ------>MYB83        xxxxxxxxxxxxxxxx>smallRNA(i)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      -------->P <<<<<<<<<TBF1  xxxxxxxxxxxxxxxx             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<------ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR14(2)<         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)--------->ARR11(3)x      ------->TEIL        <---------ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)     xxxxxxxxxxxxxxxxxxxxxx      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxx   --------->ANAC58       --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxx   --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxxxxx xxxxx>smallRNA(i)---------->DOF2---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ANAC46 <xxxxx xxxxxxxx>smallRNA(se3) ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ================================HOX2a_HOX2a   gcagcatgcatcgcacaactcaaagacggatacatcaaaggcgatagaacaaagcacatcctaccaaaattcttcttcacacacgatctacaaaagagcg  12600500                                                                 ------>MYB83                                                                 ------>MYB46(1)                                                               <---------MYB46(2)                                                               <---------MYB59                                                               <---------MYB111(1)            xxxxxxxxxxxxxxxx>smallRNA(i)                   --------->ATERF1(1)       xxxxxxxxxxxxxxxx>smallRNA(i)                       xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(i)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(s)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <---------SPL7                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(s)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -------DEAR3(1)  <------ZmHOX2a(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----DEAR3(1)    --------->AGP1               <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxsmallRNA(s)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxsmallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxsmallRNA(s)<-------TEIL              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxx>smallRNA(i2)                    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxx>smallRNA(s)        --------->GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <----- xxxxxxxxxxx>smallRNA(s)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           ------ xxxxxxx>smallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->MYB55(1)             xxxxxx ---------------AtSPL3       --------->YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(s)                       --------- x>smallRNA(se3) <---------ARR14(2)     xxxxxxxxxxxxxxxx>smallRNA(i)                       xxxxxxxxxx xxxsmallRNA(fl3)--------->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxxxxx xxxx>smallRNA(fl3)------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(i) xsmallRNA(se3)  <---------GLK1(2)     xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxx   gcgatgtacgagttctacagatccgttcgaatgataatctggctgacttattcaccaaggcgctacctactgctattttcaagaagttagtctatcgtat  12600600  Previous    Next  AGI:  At5g33315.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.7e-20 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans) Range:  from: 12600087    to: 12600785    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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