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Chromosome 1
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Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
RAV1(1)
--------->
ANAC46
<---------
ALFIN1
--------->
LBD16
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
LBD16
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
LBD16
--------->
ARR14(2)
--------->
ANAC46
<---------
LBD16
--------
DEAR3(2)
----------->
RAV1(1)
--------->
GLK1(1)
------>
ETT(1)
<---------
WOX13(1)
<---------
GLK1(1)
-------
ANAC46
--------->
ATHB12
---------->
DOF2
--------->
ARR14(2)
---
NtERF2
<---------
WRKY38(1)
------------------------>
ANAC81
-
-------
HVH21
<---------
WRKY12
--------->
ANAC58
<---------
ARR14(2)
-
-
AtMYB61
<-----------
HVH21
--------->
ANAC58
<------
ZmHOX2a(1)
-
tcggatcccgcaccatgggctcgagaccagtcaaagattgccacataagcaagagaggcccaaaagaagagaagcccataggataccccgagttgatagt
12599700
<---------
LBD16
---------->
DOF2
<---------
REM1(1)
--------->
ALFIN1
<---------
RAP2.6(3)
=========================
RAV
<---------
LBD16
----------->
RAV1(1)
--------->
TOE1(2)
------>
NtERF2
<-----------
RAV1(2)
<---------
WRKY18(1)
<---------
bZIP60(2)
<---------
At4g35610
--------->
WRKY38(1)
--------->
ZAT18
----------->
HVH21
--------->
WRKY12
---------->
DOF2
--------->
ZAT14
--------->
RAP2.3(3)
----------->
HVH21
<---------
WRKY12
<---------
ZAT14
--------->
DREB2C(2)
--------->
ALFIN1
--------->
GLK1(2)
--------->
LBD16
--------->
ETT(2)
<---------
ANAC46
<-------
TEIL
<---------
WRKY38(1)
--------->
ALFIN1
--------->
At4g35610
-------->
ANAC58
--------->
CCA1(2)
--------->
ANAC46
<---------
ETT(1)
-------->
ANAC58
<---------
ARR14(2)
<---------
LBD16
--------->
DEAR3(2)
<------
ZmHOX2a(1)
-------->
ANAC46
--------->
ARR14(2)
-------->
P
<---------
ANAC46
<-----------
RAV1(2)
acaagcgaggtgttgacctgggaagtggatacagaatcaaggtcaaagttacccggagtgaagtgtcgaatgggccgacaggtgaagcccaggaagtctg
12599800
<---
----------->
GT1
<---------
TOE2(3)
--------->
HSFB2a(1)
--------->
AHL20(2)
<---------
HSFB2a(1)
<---------
YAB1
<---------
ANAC46
<---------
AHL20(2)
<---------
TOE1(2)
<---------
TOE2(3)
<---------
AHL20(2)
gagtcaattcaaattcgaacgtttgaatagataattcgaaaactgaaacgaatacatttaagatagaataattttgtgtaaatgggaatttaatgtattc
12599900
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ANAC55(2)
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
--------->
ANAC55(2)
--------->
ANAC55(2)
<---------
WRKY38(1)
--------->
ANAC58
--------->
ANAC58
<---------
ATHB51
--------->
ANAC46
--------->
ANAC46
<---------
AHL20(2)
---------->
DOF2
--------->
ZAT14
---------->
DOF2
--------->
AHL20(2)
--------->
AtLEC2
<---------
ARR14(2)
<---------
ANAC46
<---------
WRKY12
--------->
ANAC55(1)
--------->
ARR14(2)
----
-------
DOF2
<-----------
HVH21
<----------
ID1
--------->
ANAC46
------>
ZmHOX2a(1)
---------
tttgggtataaattatgggtcaaaggccatgtaaagggacacgcatttttgggcaaacacactatacgcattttcctacaaagctcatagttttctcaat
12600000
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
*
TSS
<--------
--------->
KAN4(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
YAB1
--------->
AHL20(2)
<---------
ETT(1)
<---------
KAN4(1)
<---------
AHL20(2)
--------->
ARR14(2)
--------->
KAN4(1)
--------->
AHL20(2)
<---------
ARR14(2)
--------->
WOX13(1)
------>
ZmHOX2a(1)
--------->
ZAT6
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
------------>
CBF
---------->
ID1
------>
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----->
YAB1
<---------
HSFB2a(2)
<---------
KAN4(2)
<---------
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--->
CBF
--------->
HSFB2a(2)
--------->
YAB1
--------->
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
agtcatcaatctattttctagtacatttgtcctcaagaataatccttctcactaaataaataaatacttgagtgtgtgaatccgac
atccacagacatgg
12600100
------>
ZmHOX2a(2)
--------->
LBD16
<---------------
AGL15
--------------->
AGL15
<-----------------
AGL1
<---------
AHL20(2)
----------------->
AGL2
--------->
AHL20(2)
--------->
ANAC55(2)
==============
HOX2a_HOX2a
--------->
ANAC46
<---------
ANAC55(2)
<--------
P
--------->
ANAC58
<---------
ARR11(3)
<---------
YAB1
--------->
TOE1(2)
<---------
ARR14(2)
--------->
YAB1
<---------
GLK1(1)
------>
MYB46(1)
--------->
ARR14(2)
<---------
ICU4
--------->
CCA1(2)
------>
MYB83
--------->
AHL20(2)
<------
ZmHOX2a(1)
<---------
ATHB51
<---------
ARR14(2)
--------->
WOX13(1)
--------->
At4g35610
----------------->
AGL1
--------->
ARR14(2)
--------->
MYB46(3)
<---------
WOX13(1)
=====================================
HOX2a_HOX2a
------>
ZmHOX2a(1)
--------->
ARR11(3)
=====================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<-----------
GT1
--------->
ANAC58
<---------
At4g35610
==============================
HOX2a_HOX2a
-
TGA1a
<---------
MYB59
<---------
ARR11(3)
<-------
TEIL
------>
ZmHOX2a(2)
---------->
DOF2
gtttgttttttcctaaccaatccaaggaagatttaattggttttgcagatgcaggatacttatctgatccccataatggtagatcgcaaaggatatgtct
12600200
<-------
TEIL
--------->
AtLEC2
<---------
SPL7
<---------
ICU4
--------->
LBD16
<---------
ATHB12
<---------
ANAC58
<----------
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ALFIN1
--------->
ZAT18
<---------
ARR11(3)
<---------
ANAC46
<---------
ZAT18
<---------
ALFIN1
<---------
ARR11(3)
<----
<---------
ANAC58
---------->
ID1
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
-----
<---------
LBD16
<---------
ANAC58
<---------
ALFIN1
--------->
ARR11(3)
<----
------->
MYC3
<---------
ANAC58
----------->
RAV1(1)
<---------
RVE1(1)
------->
TEIL
<-------
MYC3
<---------
At4g35610
--------->
ANAC46
--------->
YAB1
<-----------
GT1
-----
tcacatgcgggggtacagctatttcttggcgctctatgaagcaaactatttcagccacatcttctaatcatgcagagattttagcaattcatgaagctag
12600300
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<-----------
GT1
<---------
ZAT18
<-------
TEIL
<------
ZmHOX2a(2)
<---------
ARR14(2)
xxxxxxxxxxx
--------->
ARR11(3)
xxxxxxxxxxxxxxx
--------->
AGP1
<xxxxxxxxxxxxxxxxx
<---------
ARR11(3)
<---------------
AtSPL8
--------->
ARR14(2)
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ATHB51
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
---------->
DOF2
--------->
YAB1
<---------
AtLEC2
--------->
ZAT18
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
-----
At4g35610
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AtLEC2
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
---->
At4g35610
----------->
ARR10
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
-----
ZAT2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
------->
TEIL
----------->
RAV1(1)
---->
ZAT2
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
ctgtgagtgtgtatggctaagatccatagttcaccatatacaagaagactgtggtatgtatgcagggaaaaagactccaacaattatgtacgaagacaat
12600400
xx
<xx
<--
xxx
<xxx
<---
<-----
<xxxxxxx
<xxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
----------
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
---------->
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx
--------->
TOE2(3)
---------->
DOF2
<---------
ARR14(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
------>
MYB46(1)
<---------
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
xxxx
<-------
TEIL
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC58
xxxxx
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
------>
MYB83
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
-------->
P
<<<<<<<<<
TBF1
xxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ARR14(2)
<
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
--------->
ARR11(3)
x
------->
TEIL
<---------
ARR14(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
--------->
ANAC58
--------->
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxxxxx
xxxxx>
smallRNA(i)
---------->
DOF2
---------->
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC46
<xxxxx
xxxxxxxx>
smallRNA(se3)
----------->
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
================================
HOX2a_HOX2a
gcagcatgcatcgcacaactcaaagacggatacatcaaaggcgatagaacaaagcacatcctaccaaaattcttcttcacacacgatctacaaaagagcg
12600500
------>
MYB83
------>
MYB46(1)
<---------
MYB46(2)
<---------
MYB59
<---------
MYB111(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ATERF1(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<---------
SPL7
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
-------
DEAR3(1)
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
---
NtERF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
----
DEAR3(1)
--------->
AGP1
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
>
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxx
smallRNA(s)
<-------
TEIL
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxx>
smallRNA(s)
--------->
GLK1(2)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----
xxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
------
xxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
MYB55(1)
xxxxxx
---------------
AtSPL3
--------->
YAB1
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxx
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
---------
x>
smallRNA(se3)
<---------
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxx
xxx
smallRNA(fl3)
--------->
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxx
xxxx>
smallRNA(fl3)
------>
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
x
smallRNA(se3)
<---------
GLK1(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxx
gcgatgtacgagttctacagatccgttcgaatgataatctggctgacttattcaccaaggcgctacctactgctattttcaagaagttagtctatcgtat
12600600
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AGI:
At5g33315.1
Description:
transposable element gene. copia-like retrotransposon family, has a 2.7e-20 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)
Range:
from: 12600087
to: 12600785
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.