Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->At4g35610                                                                 <---------At4g35610                                                            <---------MYB46(3)                                                            <------MYB83                                                            <------MYB46(1)                                                           <---------AtMYB61                                                        <---------MYB46(3)                                                        --------->MYB55(2)                                                       --------->ALFIN1                                                      <---------LBD16                                                      --------->LBD16                                                     <---------ANAC58                                                     <---------ANAC58                                                     <---------ANAC46                                                     <---------ANAC55(1)                                                  --------->GLK1(2)                --------->ANAC58                 --------->ARR14(2)      --------->LBD16       <---------ANAC46                          <---------ARR14(2)     --------->HSFB2a(2)       <---------ANAC58                          --------->GLK1(1)      <---------HSFB2a(2)       <---------ANAC58                          <---------GLK1(1)     <---------LBD16 --------->ZAT18--------->ANAC58            <---------LBD16--------->ALFIN1    <---------ICU4       < ->RAV1(1)      --------->ANAC46         <----------DOF2<---------DEAR3(1)     --------->YAB1  <-----   gatggcactgcttgaaatacgcctcatggaaccagacatagccctttgggggattccgtgggtggtcatctgttctgggaatcatgtcagtaatcccata  10891000                                                                         <---------ANAC58                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  --------->ARR11(3)                                                                  <---------ARR11(3)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                ----------->ARR10                                                               <------NtERF2                                                               ------>NtERF2                                                              <---------RAP2.3(1)                                                              --------->LBD16                                                             <---------RAP2.3(2)                                                             <---------RAP2.6(2)                                                             <---------RRTF1(2)                 -----                                                             <---------DEAR3(1)         <------ZmHOX2a(2)                                          --------->LBD16    <---------ANAC46          --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------LBD16         <------NtERF2          <-----------RAV1(2)            <---------ANAC46--------->GLK1(1)         ------>NtERF2<----        --------->AtMYB61            --------->ZAT18     <---------GLK1(1)        --------->DEAR3(1)        ----------->RAV1(1)        --------->ZAT18      --------->ARR14(2)       --------->DEAR3(2)  --------->ANAC46                 <---------ZAT18      <---------ARR14(2)    >>>>>>>ZML2    -------- -----------GT1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------GLK1(2)<---------ANAC58------>ZmHOX2a(2) ----ATHB12  <------ZmHOX2a(1)  ---------->DOF2      --------->ETT(1)   ---------->ID1 <---------ARR14(2)   attcacaaaaccacaggaggtcagcatgtcgcgatagagcgctccgtggaaagggtcggatttgcggcgatcttgtcgttctagccgacgatcgggtcaa  10891100                                                               <---------WRKY18(1)                          <-----------ARR10                 <------ZmHOX2a(1)                          ----------->ARR10         <---------ZAT14         --------->MYB46(3)<---------HSFC1(2)       <---------ZAT18 ---->ICU4        <---------ATHB12                  --------->ZAT14 -----YAB1   --------->TOE2(3)       <---------ALFIN1     <---------TOE2(3) ->WRKY18(1) --------->YAB1--------->HSFC1(2)       --------->ARR14(2)<---------SPL7   gattgaagtcaacaatctcaatcgagagtagcttcgcctcaacctcggcttcagtatacttaggatgaccgtcgtactcgtcttctatatcgatgatgca  10891200                                                  <-----------GT1                                              --------->GLK1(1)                --------->TOE1(3)                                              <---------GLK1(1)                --------->TOE2(3)                                       --------->YAB1               ------>ZmHOX2a(2)                                      --------->KAN4(1)           <---------AGP1                 --------->MYB46(3)   --------->ICU4 <---------ALFIN1        <<<<<<<<<NAM                 <---------MYB55(2)  <---------KAN4(2)            <---------ARR14(2)                <           --------->ANAC58  --------->ATHB12--------->ARR14(2)   --------->ARR14(2)            -----           --------->ANAC46  <---------ICU4  <---------GLK1(2) <---------HSFB2a(2)       <------NtERF2           --------->ANAC58 <---------YAB1--------->YAB1       --------->HSFB2a(2)<---------DOF5.7(2)   ttcaaatcgatctaagccatccaccagttcatcatggggaataatcagatttccaccatcttcttctcgatctggctcatcccttaacgtcgggatgtca  10891300                                             --------->MYB52(1)                                   ---                                           --------->MYB46(3)         <---------YAB1            <----   <---------WOX13(1)                <----------DOF2                --------->YAB1             ------ --------->ATHB12               ------>ZmHOX2a(1)                 --------->MYB52(1)         <------ZmHOX2a(1) ---------YAB1             <---------At4g35610           <----------ID1              --------->YAB1<- ---->WOX13(1)          <------NtERF2--------------------->WRI1 <---------MYB52(2) <-----------HVH21   atctgattggctcgactagattgggcctcatctcctcggctttgaacaaaccgagaattacgacgaactaacataatagtctcactgtcataagaggagc  10891400             <---------DAG2             <---------ANAC58             <---------ANAC58          ------->GAMYB        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ---------->DOF2       --------->MYB52(1)                         --------->ANAC58       <---------ICU4                             --------->ANAC58                  <------ZmHOX2a(1) ------>At4g35610                              ------->GAMYB                <---------TOE1(2) -------RAV1(2)            ------>ZmHOX2a(1)  --------->ANAC46              <---------TOE2(2) --->At4g35610<---------SPL7                --------->MYB52(1)----------->GT1 <------ZmHOX2a(1) -----ZmHOX2a(1)         *TSS    ----------->GT1---------->DOF2           --------->TOE1(2)      ----   aggagacaataactgccttacccatggtcctgaagttgtcaaaaatcaacgaaagcacaaagaacagaaaatagttcgtaggagaaggagcgagaactac  10891500                                                                                             <-------                                                                                             --------                     <---------ANAC46                                                       <--------                    <------NtERF2                                         <------NtERF2     ---------                    --------->At4g35610                                   <---------At4g35610<-------                    <---------LBD16                                    <---------LBD16    --------->YAB1                   <---------RAP2.3(1)                         --------->ANAC58   ------>MYB46(1)         <----------DOF2 --------->DAG2                        --------->ANAC58   ------>MYB83-------    <---------HSFC1(2)  ---------->DOF2               <---------AHL20(2)  --------->At4g35610--------    --------->HSFC1(2) <------NtERF2            ------>ZmHOX2a(2)     --------->ALFIN1 --------->YAB1 ----->TOE1(2)    <---------DEAR3(1)       <--------P --------->AHL20(2)<---------RAP2.6(2) <--------   cttcgatacttcttttgcaagcggcggaaagtgaagaaagaatgggttgatcgaatttatatagaaggcaatgtgcggcagacctacaaaaataatcatt  10891600                                     <---------SPL7                                    <---------ANAC58                                    <---------ANAC46                                    <---------ANAC58         --------->ALFIN1                                   <-------TEIL              <-----------RAV1(1)                                  --------->ALFIN1          ------->MYC3                                  <------------------SPL14  ------->MYC2                                 <-------MYC2               <-------MYC2                                 <-------MYC3               <-------MYC4                                 ------->MYC2               <-------MYC3                <-------GAMYB   <---------ANAC58            ------->MYC4                ==========================MYC_MYB          <--------ABF1   <---------HSFB2a(2)   ------>MYB46(1)     <---------ALFIN1<---------LBD16     <---------TGA1a --------->HSFB2a(2)   -------->P  <------MYB83     --------->TGA1a            --------->TGA1a --------->LBD16   =======================================MYC_MYB          --------->O2   <---------TOE1(1)   ------>MYB83<------MYB46(1)  <---------TGA1a            <---------ANAC55(2) <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ALFIN1     --------->ANAC55(2) --------->GLK1(2) --ICU4        <---------MYB46(3)------->MYC3              <---------O2<---------SPL7 ->ATHB12     --------->MYB59   <---------ANAC58           =====================bZIP_bZIP -YAB1      <---------MYB52(1) <-------MYC3           ----------->HVH21<-----------HVH21 >ICU4    <---------HSFC1(2)   ------->MYC3      --------->ANAC58     <---------TGA1a -HAHB4   --------->HSFC1(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->TGA1a -->TOE2(3)<---------SPL7--------->ANAC46        --------->ANAC58     --------->O2 ->YAB1   <---------HSFB2a(1) --------->ANAC46 ==========================RAV   --------->ARR14(2) -ATHB12  <---------DEAR3(2)<---------ALFIN1   <-----------RAV1(2)    <---------O2              -----   agacctacaagacggttcggttgccaaactccacgcgtgcgtgcggatgccaggctatgacacgtgttggagacgtccgagaatatgaaacgattcagaa  10891700                                                                <---------ANAC46                                                                <---------ANAC55(2)                                                                --------->ANAC55(2)                                                                --------->HSFB2a(2)                                                                <---------HSFB2a(2)         ---------                                                               <---------LBD16            <---------ZAT2                                                             <---------ARR14(2)           --------->ZAT2                                                             --------->ARR14(2)          <---------ARR14(2)                                                            <---------HSFB2a(1)        --------->LBD16                                                            --------->HSFB2a(1)       --------->HSFB2a(2)                                                            <---------HSFC1(2)        <---------HSFB2a(2)                                                            --------->HSFC1(2)     ------>ZmHOX2a(2)            <-----------GT1                                ----------->ARR10      <------ZmHOX2a(2)       --------->AHL20(2)                                  --------->HSFB2a(1)    <---------GLK1(1)       <---------AHL20(2)                        --------------->AGL15            --------->GLK1(1)      <---------WOX13(1)                         <---------------AGL15           <-----------ARR10    <---------ICU4                               ------>ZmHOX2a(1)               <---------ARR11(3)    -------->HAHB4                              <-----------------AGL1           --------->ARR14(2)    --------->ATHB12                            ----------------->AG             <---------ARR14(2)    --------->YAB1                              <-----------------AGL3     <---------ARR14(2)   <---------YAB1                               <-----------------AGL2     --------->ARR14(2)<-------   <---------ATHB12                             ----------------->AGL2 <---------TOE2(3) --------->ARR14(2)   --------->ICU4                  ---------->DOF2    <---------LBD16 ---------->DOF2<---------LBD16  <---------TOE2(3)   ------>ZmHOX2a(1)         --------->TOE2(3)--------->LBD16 --------->ARR11(3) ---->GLK1(1)        --------->TOE2(3)  <---------WOX13(1) <---------HSFB2a(1)  <---------CCA1(2)----   atctaatgattaattcacacattcctaagttataaacaaaagattgacttcctaaattcggaagttccggattaaagtattcggatctcccgaactgggg  10891800                                                                                               ------                                                                                               ------                                                                                               ------                                          --------->At4g35610                               <--------       <-----------RAV1(1)           <-----------GT1                                        <--------  <---------MYB59        <---------ALFIN1 --------->ZAT2     <---------YAB1                 --------- >ALFIN1   <------MYB46(1)  --------->DEAR3(1)     --------->LBD16          --------->ARR14(2)------- --LBD16   <------MYB83<-----------GT1--------->MYB52(1)   ----------->GT1  <---------ARR14(2)------- ----->ATERF1(1)  --------->ICU4--------->LBD16  <---------LBD16  --------->AHL20(2)       --------->ALFIN1   gaggcctaattgttggtgcaagaattaacacctccgaaaataccagcttaaaccggaggtattgtgaataaaatcgagaattcgactaaaccggtgtacc  10891900  Previous    Next  AGI:  At5g28870.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 10889282    to: 10891425    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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