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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
At4g35610
<---------
At4g35610
<---------
MYB46(3)
<------
MYB83
<------
MYB46(1)
<---------
AtMYB61
<---------
MYB46(3)
--------->
MYB55(2)
--------->
ALFIN1
<---------
LBD16
--------->
LBD16
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<---------
ANAC55(1)
--------->
GLK1(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
LBD16
<---------
ANAC46
<---------
ARR14(2)
--------->
HSFB2a(2)
<---------
ANAC58
--------->
GLK1(1)
<---------
HSFB2a(2)
<---------
ANAC58
<---------
GLK1(1)
<---------
LBD16
--------->
ZAT18
--------->
ANAC58
<---------
LBD16
--------->
ALFIN1
<---------
ICU4
<
->
RAV1(1)
--------->
ANAC46
<----------
DOF2
<---------
DEAR3(1)
--------->
YAB1
<-----
gatggcactgcttgaaatacgcctcatggaaccagacatagccctttgggggattccgtgggtggtcatctgttctgggaatcatgtcagtaatcccata
10891000
<---------
ANAC58
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
----------->
ARR10
<------
NtERF2
------>
NtERF2
<---------
RAP2.3(1)
--------->
LBD16
<---------
RAP2.3(2)
<---------
RAP2.6(2)
<---------
RRTF1(2)
-----
<---------
DEAR3(1)
<------
ZmHOX2a(2)
--------->
LBD16
<---------
ANAC46
--------->
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
LBD16
<------
NtERF2
<-----------
RAV1(2)
<---------
ANAC46
--------->
GLK1(1)
------>
NtERF2
<----
--------->
AtMYB61
--------->
ZAT18
<---------
GLK1(1)
--------->
DEAR3(1)
----------->
RAV1(1)
--------->
ZAT18
--------->
ARR14(2)
--------->
DEAR3(2)
--------->
ANAC46
<---------
ZAT18
<---------
ARR14(2)
>>>>>>>
ZML2
--------
-----------
GT1
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
GLK1(2)
<---------
ANAC58
------>
ZmHOX2a(2)
----
ATHB12
<------
ZmHOX2a(1)
---------->
DOF2
--------->
ETT(1)
---------->
ID1
<---------
ARR14(2)
attcacaaaaccacaggaggtcagcatgtcgcgatagagcgctccgtggaaagggtcggatttgcggcgatcttgtcgttctagccgacgatcgggtcaa
10891100
<---------
WRKY18(1)
<-----------
ARR10
<------
ZmHOX2a(1)
----------->
ARR10
<---------
ZAT14
--------->
MYB46(3)
<---------
HSFC1(2)
<---------
ZAT18
---->
ICU4
<---------
ATHB12
--------->
ZAT14
-----
YAB1
--------->
TOE2(3)
<---------
ALFIN1
<---------
TOE2(3)
->
WRKY18(1)
--------->
YAB1
--------->
HSFC1(2)
--------->
ARR14(2)
<---------
SPL7
gattgaagtcaacaatctcaatcgagagtagcttcgcctcaacctcggcttcagtatacttaggatgaccgtcgtactcgtcttctatatcgatgatgca
10891200
<-----------
GT1
--------->
GLK1(1)
--------->
TOE1(3)
<---------
GLK1(1)
--------->
TOE2(3)
--------->
YAB1
------>
ZmHOX2a(2)
--------->
KAN4(1)
<---------
AGP1
--------->
MYB46(3)
--------->
ICU4
<---------
ALFIN1
<<<<<<<<<
NAM
<---------
MYB55(2)
<---------
KAN4(2)
<---------
ARR14(2)
<
--------->
ANAC58
--------->
ATHB12
--------->
ARR14(2)
--------->
ARR14(2)
-----
--------->
ANAC46
<---------
ICU4
<---------
GLK1(2)
<---------
HSFB2a(2)
<------
NtERF2
--------->
ANAC58
<---------
YAB1
--------->
YAB1
--------->
HSFB2a(2)
<---------
DOF5.7(2)
ttcaaatcgatctaagccatccaccagttcatcatggggaataatcagatttccaccatcttcttctcgatctggctcatcccttaacgtcgggatgtca
10891300
--------->
MYB52(1)
---
--------->
MYB46(3)
<---------
YAB1
<----
<---------
WOX13(1)
<----------
DOF2
--------->
YAB1
------
--------->
ATHB12
------>
ZmHOX2a(1)
--------->
MYB52(1)
<------
ZmHOX2a(1)
---------
YAB1
<---------
At4g35610
<----------
ID1
--------->
YAB1
<-
---->
WOX13(1)
<------
NtERF2
--------------------->
WRI1
<---------
MYB52(2)
<-----------
HVH21
atctgattggctcgactagattgggcctcatctcctcggctttgaacaaaccgagaattacgacgaactaacataatagtctcactgtcataagaggagc
10891400
<---------
DAG2
<---------
ANAC58
<---------
ANAC58
------->
GAMYB
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
---------->
DOF2
--------->
MYB52(1)
--------->
ANAC58
<---------
ICU4
--------->
ANAC58
<------
ZmHOX2a(1)
------>
At4g35610
------->
GAMYB
<---------
TOE1(2)
-------
RAV1(2)
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
TOE2(2)
--->
At4g35610
<---------
SPL7
--------->
MYB52(1)
----------->
GT1
<------
ZmHOX2a(1)
-----
ZmHOX2a(1)
*
TSS
----------->
GT1
---------->
DOF2
--------->
TOE1(2)
----
aggagacaataactgccttacccat
ggtcctgaagttgtcaaaaatcaacgaaagcacaaagaacagaaaatagttcgtaggagaaggagcgagaactac
10891500
<-------
--------
<---------
ANAC46
<--------
<------
NtERF2
<------
NtERF2
---------
--------->
At4g35610
<---------
At4g35610
<-------
<---------
LBD16
<---------
LBD16
--------->
YAB1
<---------
RAP2.3(1)
--------->
ANAC58
------>
MYB46(1)
<----------
DOF2
--------->
DAG2
--------->
ANAC58
------>
MYB83
-------
<---------
HSFC1(2)
---------->
DOF2
<---------
AHL20(2)
--------->
At4g35610
--------
--------->
HSFC1(2)
<------
NtERF2
------>
ZmHOX2a(2)
--------->
ALFIN1
--------->
YAB1
----->
TOE1(2)
<---------
DEAR3(1)
<--------
P
--------->
AHL20(2)
<---------
RAP2.6(2)
<--------
cttcgatacttcttttgcaagcggcggaaagtgaagaaagaatgggttgatcgaatttatatagaaggcaatgtgcggcagacctacaaaaataatcatt
10891600
<---------
SPL7
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
--------->
ALFIN1
<-------
TEIL
<-----------
RAV1(1)
--------->
ALFIN1
------->
MYC3
<------------------
SPL14
------->
MYC2
<-------
MYC2
<-------
MYC2
<-------
MYC3
<-------
MYC4
------->
MYC2
<-------
MYC3
<-------
GAMYB
<---------
ANAC58
------->
MYC4
==========================
MYC_MYB
<--------
ABF1
<---------
HSFB2a(2)
------>
MYB46(1)
<---------
ALFIN1
<---------
LBD16
<---------
TGA1a
--------->
HSFB2a(2)
-------->
P
<------
MYB83
--------->
TGA1a
--------->
TGA1a
--------->
LBD16
=======================================
MYC_MYB
--------->
O2
<---------
TOE1(1)
------>
MYB83
<------
MYB46(1)
<---------
TGA1a
<---------
ANAC55(2)
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ALFIN1
--------->
ANAC55(2)
--------->
GLK1(2)
--
ICU4
<---------
MYB46(3)
------->
MYC3
<---------
O2
<---------
SPL7
->
ATHB12
--------->
MYB59
<---------
ANAC58
=====================
bZIP_bZIP
-
YAB1
<---------
MYB52(1)
<-------
MYC3
----------->
HVH21
<-----------
HVH21
>
ICU4
<---------
HSFC1(2)
------->
MYC3
--------->
ANAC58
<---------
TGA1a
-
HAHB4
--------->
HSFC1(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
TGA1a
-->
TOE2(3)
<---------
SPL7
--------->
ANAC46
--------->
ANAC58
--------->
O2
->
YAB1
<---------
HSFB2a(1)
--------->
ANAC46
==========================
RAV
--------->
ARR14(2)
-
ATHB12
<---------
DEAR3(2)
<---------
ALFIN1
<-----------
RAV1(2)
<---------
O2
-----
agacctacaagacggttcggttgccaaactccacgcgtgcgtgcggatgccaggctatgacacgtgttggagacgtccgagaatatgaaacgattcagaa
10891700
<---------
ANAC46
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
---------
<---------
LBD16
<---------
ZAT2
<---------
ARR14(2)
--------->
ZAT2
--------->
ARR14(2)
<---------
ARR14(2)
<---------
HSFB2a(1)
--------->
LBD16
--------->
HSFB2a(1)
--------->
HSFB2a(2)
<---------
HSFC1(2)
<---------
HSFB2a(2)
--------->
HSFC1(2)
------>
ZmHOX2a(2)
<-----------
GT1
----------->
ARR10
<------
ZmHOX2a(2)
--------->
AHL20(2)
--------->
HSFB2a(1)
<---------
GLK1(1)
<---------
AHL20(2)
--------------->
AGL15
--------->
GLK1(1)
<---------
WOX13(1)
<---------------
AGL15
<-----------
ARR10
<---------
ICU4
------>
ZmHOX2a(1)
<---------
ARR11(3)
-------->
HAHB4
<-----------------
AGL1
--------->
ARR14(2)
--------->
ATHB12
----------------->
AG
<---------
ARR14(2)
--------->
YAB1
<-----------------
AGL3
<---------
ARR14(2)
<---------
YAB1
<-----------------
AGL2
--------->
ARR14(2)
<-------
<---------
ATHB12
----------------->
AGL2
<---------
TOE2(3)
--------->
ARR14(2)
--------->
ICU4
---------->
DOF2
<---------
LBD16
---------->
DOF2
<---------
LBD16
<---------
TOE2(3)
------>
ZmHOX2a(1)
--------->
TOE2(3)
--------->
LBD16
--------->
ARR11(3)
---->
GLK1(1)
--------->
TOE2(3)
<---------
WOX13(1)
<---------
HSFB2a(1)
<---------
CCA1(2)
----
atctaatgattaattcacacattcctaagttataaacaaaagattgacttcctaaattcggaagttccggattaaagtattcggatctcccgaactgggg
10891800
------
------
------
--------->
At4g35610
<--------
<-----------
RAV1(1)
<-----------
GT1
<--------
<---------
MYB59
<---------
ALFIN1
--------->
ZAT2
<---------
YAB1
---------
>
ALFIN1
<------
MYB46(1)
--------->
DEAR3(1)
--------->
LBD16
--------->
ARR14(2)
-------
--
LBD16
<------
MYB83
<-----------
GT1
--------->
MYB52(1)
----------->
GT1
<---------
ARR14(2)
-------
----->
ATERF1(1)
--------->
ICU4
--------->
LBD16
<---------
LBD16
--------->
AHL20(2)
--------->
ALFIN1
gaggcctaattgttggtgcaagaattaacacctccgaaaataccagcttaaaccggaggtattgtgaataaaatcgagaattcgactaaaccggtgtacc
10891900
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AGI:
At5g28870.1
Description:
transposable element gene. pseudogene, hypothetical protein
Range:
from: 10889282
to: 10891425
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.