Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->YAB1            <---------ICU4           <---------ATHB12          ------>MYB46(1)        --------->ZAT14          ------>MYB83           <---------ZAT18     <-----------GT1             <---------ZAT14 <---------TOE1(3)               --------->ZAT18 <---------TOE2(3)       ---------->DOF2 --------AHL20(2)     --------->At4g35610 ------>AHL20(1)      <---------At4g35610                                     ---------->DOF2       - -------AHL20(1)  --------->AtMYB61                                    --------->AtMYB61     <------- ------>AHL20(2)--------->ARR11(3)                                     ------->GAMYB         -------- -------AHL20(2)<---------ARR11(3)        <---------CCA1(2)           --------->MYB46(3) <----------- >LBD16  --------->WOX13(1)    --------->At4g35610<---------GLK1(2)  -------->P        <---------YAB1   tttaatgttaccaatcaagacctcagctaaagcagtggactctcatatatcagtttctccatcaaatgggcaacctccagtaaagcattttgatgatgcc  10689700                                                                                                <----                                                                                     <----------DOF2                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                  --------->ARR11(3)                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)           <------MYB83                                                           <---------ARR11(3)           <------MYB46(1)                                                       <------ZmHOX2a(1) --------->DOF2                                                             --------->ALFIN1   <----- --bZIP60(1)           --------->ALFIN1                                   <---------ANAC46     <----- ->bZIP60(1)          ------->MYC3                                    --------->MYB52(1)    --------- ----------WRI1       <-------MYC3                        --------->AHL20(2)<---------REM1(1)--------   atcaaagaaaatttggtttctacatgtgtgtctgcatcagttaaactccttgttaaactataaattcactactaaggggtgtaggatctttgaaacgata  10689800                                                         ---------->DOF2                                                      <-------GAMYB                                                     ----------->GT1          <---------HSFB2a(2)                                                     --------->MYB111(2)      --------->HSFB2a(2)                                                     <---------MYB46(3)      <---------TOE1(1)                       --------->ATHB12           --------->HSFB2a(1)        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <---------AHL20(2)          <---------HSFB2a(1)    <---------MYB46(3)                <---------At4g35610               <---------HSFC1(2)    <---------TOE1(2)     -------                --------->At4g35610               --------->HSFC1(2)  <----------DOF2         =======              ------>ZmHOX2a(2)                   <------MYB46(1)  <---------ARR11(3)       <--------              ===================================HOX2a_HOX2a     <---------AtMYB61          <xxxxxxxx        <---------ANAC58                          <------MYB83 --------->ALFIN1             <xxxxxxxx        <---------ANAC58                         <---------AtMYB61 --------->ARR11(3)       ---------    <---------MYB52(1)--------->AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxx -----ICU4   --------->At4g35610                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ---------->DOF2 ----YAB1    <---------At4g35610               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxx ----ATHB51 <---------ARR11(3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC58 -->GT1 <---------ANAC46                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC58 ->TOE2(3)----------->ARR10               ------>ZmHOX2a(1)   <-----------HVH21  <------ZmHOX2a(1)   attgcccttggcttgatctgcagattaattgggaacagcttgtcctgtgggaaggttgttaaagggtgaggtctttggttcgaggaacgccaagcgcacc  10689900                                                                          <-------MYC4                                                                          <-------MYC3           ----                                                                          ------->PIF5          <----                                                                          ------->MYC3          -----                                                                          <-------MYC2   xxxxxxxxxxxx                                                                          ------->MYC2   xxxxxxxxxxxx                                                                         <---------bZIP60(2)    <----                                                                         --------->bZIP60(2)    <----                                                                         <---------TGA1a=============                                                             ------>NtERF2------->MYC4  xxxxxxxxxxxxx                                                             ----------->RAV1(1)        -------->P---                                                            --------->DEAR3(1)   ----------->GT1<----      ----------->RAV1(2)                                 ------>NtERF2  --------->O2  ==============     --------->MYB52(1)                                  --------->DEAR3(1)     <------NtERF2   <----     -------->P   <------MYB46(1)                       --------->At4g35610----------->HVH21    -----     ------>MYB83--------->MYB111(1)                    <---------At4g35610--------->ALFIN1 <--------     ------>MYB46(1)                                   <---------ATERF1(1)<-------PIF5 ==============    --------->MYB55(1)                               <---------ZAT2      --------->PIF3(3) --------->ANAC46   <---------MYB46(2)                                --------->ZAT14     <---------O2  ------->GAMYB   <---------MYB59<------MYB83                       <---------ZAT14     --------->TGA1a============= ---->RAV1(1)    <---------AtMYB61                   --------->At4g35610 <---------PIF3(3)xxxxxxxxxxx =================RAV                                <---------At4g35610 <<<<<<<<<<HY5--------->MYB46(3) -ZAT18       --------->ARR14(2)                     --------->ZAT2      >>>>>>>>>>HY5<---------MYB111(1) xxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->At4g35610    ======================MYC_MYB xxxxxxxxxxxxxxsmallRNA(le3)                  XXXXXXXXXXXXXXXXXXX>MIR775 ========================MYC_MYB >ZAT18       <---------ARR14(2)            <---------DEAR3(1)        ---------------->PIF3(2)  ===== xxxxxxxxxxxxsmallRNA(se3)                  <---------MYB46(3)    <------ZmHOX2a(1) <-----------GT1 - xxxxxxxxsmallRNA(fl3)<------NtERF2xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------------PIF3(1)-------   aataacctacctggtggatttggtggcccaaggagagaggttagggtcgatgcgctgcagcgccaacaggatgccacgtggcagagtaacaacccgtccc  10690000            >>>>>>>>>>AtbZIP1            ------->MYC2            ------->MYC4            ------->MYC3            <-------MYC3           --------->O2           --------->ANAC46           --------->PIF3(3)           <---------PIF3(3)           <---------O2       <----------------PIF3(2)       ----------------->PIF3(1)      ------>NtERF2     --------->ANAC58                                 ===================MYC_MYB     --------->ANAC58                                 ====================MYC_MYB     --------->DEAR3(1)                               --------->ANAC58    --------->ATERF1(1)                               --------->O2    --------->MYB46(3)                                <---------O2   <---------ATERF1(1)                                ==================MYC_MYB  --------->ARR14(2)          ------->MYC2            <---------TGA1a  <---------ARR14(2)          ------->MYC3            --------->TGA1a  <---------TCP15(1)          <-------PIF5            --------->ANAC46  --------->PCF2              <-------MYC3            --------->ANAC58 <---------PCF2               <-------MYC2           <---------LBD16 --------->TCP20              ------->PIF5       <---------TCP15(1) --------->TCP15(1)          ============================================MYC_MYB ----->LBD16<-------MYC2     <---------bZIP60(2) --------->PCF2 -----O2 <---------ALFIN1    >>>>>>>>>>HY5      --------->TCP15(1) ---->O2--------->DEAR3(1)   <---------TGA1a    <---------ARR14(2) xxxx>smallRNA(s)            =============================================MYC_MYB xxxx>smallRNA(i)            <<<<<<<<<<HY5      --------->ARR14(2) -----ANAC46<-------PIF5     ===========================================MYC_MYB -----ANAC58<-------MYC4     --------->bZIP60(2)<---------PCF2 =====MYC_MYB                <---------PIF3(3)  <-----------HVH21 xxx>smallRNA(i)             --------->PIF3(3) <------NtERF2 ------>ALFIN1           ------>NtERF2 ------>ZmHOX2a(1)----------->HVH21 -----ANAC58------->PIF5 ----------------->PIF3(1)  <---------ALFIN1 =====MYC_MYB            <----------------PIF3(2)<---------TCP20 -----TGA1a<---------TGA1a   --------->TGA1a   --------->ATERF1(1) <-----------GT1 ---->TGA1a--------->TGA1a <---------ALFIN1   <---------MYB46(3)  *TSS  <---------GLK1(2) ---HVH21<------------OsbHLH66------->MYC4   <---------ANAC46    <-------GAMYB ====================MYC_MYB --------->O2    <---------ANAC58   --------->MYB111(2) ====================MYC_MYB <---------O2    <---------ANAC58   <---------MYB46(3) xxxxx>smallRNA(s)       <-----------HVH21  <---------LBD16    <--------P                     <------ZmHOX2a(2) ====================bZIP_bZIP<-------MYC4  <------NtERF2    ------------>MYB.PH3(2)<---------WOX13(1) ---------->HVH21  <---------ALFIN1    ================================RAV        --------->ATHB12  < -->SPL7---------------->PIF3(2)       <-----------RAV1(1) <-----------RAV1(2)   <---------YAB1     -   gtgggacccgcccacgtggccacactctgccacgtggcatcctgttggcgggtcccacgggacaggttgttacagaatgtctcttgattgttttagatca  10690100                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                       ----------->GT1                                                                                  --------->CCA1(2)        --------->MYB52(1)                                                        <---------GLK1(1)       --------->ICU4                                                             --------->GLK1(1)     --------->bZIP60(1)                                                         --------->ARR14(2)     <---------bZIP60(1)                                                      <---------TOE2(3)     <---------TGA2(1)                                                       <---------LBD16  ----------->HVH21                 ------>MYB83              <-----------RAV1(1)<---------ARR14(2) ---------ANAC55(2)                 ------>MYB46(1)           --------->ALFIN1<---------ANAC46 -------->ANAC55(2)    <---------TOE2(3)         <---------YAB1<-------GAMYB<-----------GT1   atatgtgacataatggaaacaagttatggattacaacctacattgaatgttagcattgaagagtgtgttgccatgtttttacggatatgtggatacaatg  10690200                 <--------P                <-------GAMYB                <---------ANAC58                <---------ANAC58                                                        --------->ANAC58               <------MYB83                                                             --------->ANAC58               <---------ANAC58                          <---------ANAC58         ----------->RAV1(1)               <---------ANAC58                          <---------ANAC58        --------->MYB46(3)               <------MYB46(1)                           <---------ANAC46      ------>NtERF2              <---------MYB46(3)                     <---------ANAC58          ----------->RAV1(1)          <-----------RAV1(1)                        <---------ANAC58       ------>NtERF2 <---------ARR11(3)         --------->ARR11(3)                         --------->MYB52(2)     --------->ANAC46   ---------->DOF2                                 <-----------GT1         --------->ANAC58  <---------WRKY38(1)                         ---------->DOF2              --------->ANAC58  <---------WRKY12     <----------DOF2    ----------->HVH21  <---------YAB1--------->RAP2.6(2)   aaggtcaaagagatgttgggttgcgattttttgaaggccttagagtgacaaagttacttgcttgtgattgtatcaagacgccaacaacacaagaactacg  10690300                               --------->CCA1(2)                              <---------ARR11(3)                              <---------ARR14(2)                                         <---------REM1(1)             <----------ID1   --------->ARR14(2)                                      <---------TOE1(3)            ----------->GT1   --------->ARR11(3)     <---------MYB46(3)               --------->DAG2           --------->DAG2     <---------ARR14(3)     <-----------RAV1(1)  <-------TEIL<---------TOE2(3)          ---------->DOF2     --------->ARR14(3) --------->ATHB12       <---------GLK1(1)--------->ALFIN1      --------->AtLEC2   ------>ZmHOX2a(2)  <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   tcgaattcatgaaaaagtacaaatggatcgaagatattggtcatattttagtgatttgttggagctatagatggagttcatgtgtgttaaggtgaagcct  10690400                                                      <---------SPL7                                <                                              <---------YAB1                       <---------YAB1   -                                         <---------AHL20(2)           <-----------RAV1(1)       <----     --------->ANAC46     --------->ANAC58   --------->ARR11(3)      --------->ARR11(3)      --------     --------->ANAC58     --------->ANAC58   <---------ARR11(3) --------->AHL20(2)<---------TOE2(2) <     --------->ANAC58----------->HVH21  --------->AHL20(2)      <---------AHL20(2)<---------TOE1(2) -   aaactacaaggaatgtattggaattgacacgatagaacatcatttaatatcatggccgtatgtgatataaatatgttgttttcatatgtttgaaatagag  10690500                                                       ------->TEIL                                                    <---------YAB1                                                 --------->ICU4      <---------ANAC58                           <---------YAB1      ------>ZmHOX2a(2)                        --------->ATHB12      <---------ANAC58                         <---------ICU4    <---------ARR14(2)                         -------->HAHB4                 --------->ANAC58 -------MYC2                                   --------->YAB1             --------->ANAC46 ------>MYC3         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------>ZmHOX2a(1) -----ZAT18<-----------GT1                    --------->ICU4          --------->HSFB2a(2) -->DOF2 <-----------HVH21                --------->ARR11(3)          <---------HSFB2a(2) -------MYC3 --------->ANAC58             <---------ARR11(3)       ------>NtERF2                   <- ------>MYC2 --------->ANAC58<---------TOE2(3)<---------YAB1 <----------DOF2  --------->ANAC58     <-   cacatggatcgtgtcacgatacagtagttctaacgatggtacaagataatgattatgaatttcctttgcctcctagacacaagtattatgtagttgattt  10690600  Previous    Next  AGI:  At5g28667.1    Description:  pseudogene, hypothetical protein Range:  from: 10690066    to: 10691091    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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