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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ICU4
--------->
YAB1
<---------
ATHB12
------>
MYB46(1)
<---------
ZAT18
------>
MYB83
<---------
ZAT14
<-----------
GT1
--------->
ZAT14
<---------
TOE1(3)
--------->
ZAT18
<---------
TOE2(3)
---------->
DOF2
--------
AHL20(2)
--------->
At4g35610
-------
AHL20(1)
<---------
At4g35610
---------->
DOF2
-
------>
AHL20(2)
--------->
AtMYB61
--------->
AtMYB61
--------
-------
AHL20(2)
--------->
ARR11(3)
------->
GAMYB
<-------
------>
AHL20(1)
<---------
ARR11(3)
<---------
CCA1(2)
--------->
MYB46(3)
<-----------
>
LBD16
--------->
WOX13(1)
--------->
At4g35610
<---------
GLK1(2)
-------->
P
<---------
YAB1
tttaatgttaccaatcaagacctcagctaaagcagtggactctcatatatcagtttctccatcaaatgggcaacctccagtaaagcattttgatgatgcc
10689700
<----
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
<------
MYB46(1)
<---------
ARR11(3)
<------
MYB83
<------
ZmHOX2a(1)
--------->
DOF2
--------->
ALFIN1
<-----
->
bZIP60(1)
--------->
ALFIN1
<---------
ANAC46
<-----
--
bZIP60(1)
------->
MYC3
--------->
MYB52(1)
---------
----------
WRI1
<-------
MYC3
--------->
AHL20(2)
<---------
REM1(1)
--------
atcaaagaaaatttggtttctacatgtgtgtctgcatcagttaaactccttgttaaactataaattcactactaaggggtgtaggatctttgaaacgata
10689800
---------->
DOF2
<-------
GAMYB
----------->
GT1
<---------
HSFB2a(2)
--------->
MYB111(2)
--------->
HSFB2a(2)
<---------
MYB46(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ATHB12
--------->
HSFB2a(1)
<---------
TOE1(1)
<---------
AHL20(2)
<---------
HSFB2a(1)
<---------
MYB46(3)
<---------
At4g35610
<---------
HSFC1(2)
<---------
TOE1(2)
-------
--------->
At4g35610
<------
MYB83
--------->
ARR11(3)
=======
------>
ZmHOX2a(2)
<------
MYB46(1)
<---------
AtMYB61
<xxxxxxxx
===================================
HOX2a_HOX2a
--------->
ALFIN1
<--------
<---------
ANAC58
--------->
HSFC1(2)
<----------
DOF2
<xxxxxxxx
<---------
ANAC46
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
---------
<---------
MYB52(1)
--------->
AHL20(2)
<---------
AtMYB61
<---------
ARR11(3)
<xxxxxxxxxxx
-----
ICU4
--------->
At4g35610
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
---------->
DOF2
----
ATHB51
<---------
At4g35610
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxx
----
YAB1
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC58
-->
GT1
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC58
->
TOE2(3)
----------->
ARR10
------>
ZmHOX2a(1)
<-----------
HVH21
<------
ZmHOX2a(1)
attgcccttggcttgatctgcagattaattgggaacagcttgtcctgtgggaaggttgttaaagggtgaggtctttggttcgaggaacgccaagcgcacc
10689900
------->
MYC3
<-------
PIF5
----
------->
MYC2
<----
<-------
MYC4
<----
<-------
MYC2
xxxxxxxxxxxx
<-------
MYC3
xxxxxxxxxxxx
--------->
O2
-------->
P
---
<---------
bZIP60(2)
<----
--------->
PIF3(3)
<----
----------->
RAV1(1)
xxxxxxxxxxxxx
------>
NtERF2
------->
MYC4
------->
GAMYB
--------->
DEAR3(1)
----------->
GT1
-----
----------->
RAV1(2)
------>
NtERF2
<---------
O2
==============
--------->
MYB52(1)
--------->
DEAR3(1)
<------
NtERF2
-----
-------->
P
<------
MYB46(1)
--------->
At4g35610
----------->
HVH21
<----
------>
MYB83
--------->
MYB111(1)
<---------
At4g35610
--------->
ALFIN1
--------->
ANAC46
------>
MYB46(1)
<---------
ATERF1(1)
------->
PIF5
==============
--------->
MYB55(1)
<---------
At4g35610
--------->
TGA1a
=============
<---------
MYB46(2)
<---------
ZAT14
--------->
bZIP60(2)
<--------
<---------
MYB59
<------
MYB83
--------->
At4g35610
<---------
TGA1a
=============
---->
RAV1(1)
<---------
AtMYB61
--------->
ZAT14
<---------
PIF3(3)
xxxxxxxxxxx
=================
RAV
--------->
ZAT2
======================
MYC_MYB
xxxxxxxxxxxxxx
smallRNA(le3)
<---------
ZAT2
========================
MYC_MYB
-
ZAT18
--------->
ARR14(2)
--------->
At4g35610
<<<<<<<<<<
HY5
--------->
MYB46(3)
xxxxxxxxxxxxxxx
smallRNA(fl3)
XXXXXXXXXXXXXXXXXXX>
MIR775
>>>>>>>>>>
HY5
<---------
MYB111(1)
>
ZAT18
<---------
ARR14(2)
<---------
MYB46(3)
---------------->
PIF3(2)
=====
xxxxxxxxxxxx
smallRNA(se3)
<---------
DEAR3(1)
<------
ZmHOX2a(1)
<-----------
GT1
-
xxxxxxxx
smallRNA(fl3)
<------
NtERF2
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<-----------------
PIF3(1)
-------
aataacctacctggtggatttggtggcccaaggagagaggttagggtcgatgcgctgcagcgccaacaggatgccacgtggcagagtaacaacccgtccc
10690000
>>>>>>>>>>
AtbZIP1
------->
MYC2
------->
MYC4
------->
MYC3
<-------
MYC3
--------->
O2
--------->
ANAC46
--------->
PIF3(3)
<---------
PIF3(3)
<---------
O2
<----------------
PIF3(2)
----------------->
PIF3(1)
------>
NtERF2
--------->
ANAC58
===================
MYC_MYB
--------->
ANAC58
====================
MYC_MYB
--------->
DEAR3(1)
--------->
ANAC58
--------->
ATERF1(1)
--------->
O2
--------->
MYB46(3)
<---------
O2
<---------
ATERF1(1)
==================
MYC_MYB
--------->
ARR14(2)
------->
MYC2
<---------
TGA1a
<---------
ARR14(2)
------->
MYC3
--------->
TGA1a
<---------
TCP15(1)
<-------
PIF5
--------->
ANAC46
--------->
PCF2
<-------
MYC3
--------->
ANAC58
<---------
PCF2
<-------
MYC2
<---------
LBD16
--------->
TCP20
------->
PIF5
<---------
TCP15(1)
--------->
TCP15(1)
============================================
MYC_MYB
----->
LBD16
<-------
MYC2
<---------
bZIP60(2)
--------->
PCF2
-----
ANAC58
<-------
PIF5
>>>>>>>>>>
HY5
--------->
TCP15(1)
-----
ANAC46
<-------
MYC4
<---------
TGA1a
<---------
ARR14(2)
xxxx>
smallRNA(s)
=============================================
MYC_MYB
xxxx>
smallRNA(i)
<<<<<<<<<<
HY5
--------->
ARR14(2)
------>
ALFIN1
===========================================
MYC_MYB
-----
TGA1a
<---------
TGA1a
--------->
bZIP60(2)
<---------
PCF2
-----
ANAC58
------->
PIF5
<---------
PIF3(3)
<-----------
HVH21
xxx>
smallRNA(i)
--------->
PIF3(3)
<------
NtERF2
---->
O2
<---------
ALFIN1
------>
NtERF2
------>
ZmHOX2a(1)
----------->
HVH21
=====
MYC_MYB
----------------->
PIF3(1)
<---------
ALFIN1
---->
TGA1a
--------->
TGA1a
--------->
TGA1a
--------->
ATERF1(1)
-----
O2
--------->
DEAR3(1)
<---------
ALFIN1
<---------
MYB46(3)
<-----------
GT1
====================
MYC_MYB
--------->
O2
<---------
ANAC46
*
TSS
<---------
GLK1(2)
=====
MYC_MYB
<----------------
PIF3(2)
<---------
TCP20
<-------
GAMYB
---
HVH21
<------------
OsbHLH66
------->
MYC4
<---------
ANAC58
--------->
MYB111(2)
====================
MYC_MYB
<---------
O2
<---------
ANAC58
<---------
MYB46(3)
xxxxx>
smallRNA(s)
<-----------
HVH21
<---------
LBD16
<--------
P
<------
ZmHOX2a(2)
====================
bZIP_bZIP
<-------
MYC4
<------
NtERF2
------------>
MYB.PH3(2)
<---------
WOX13(1)
---------->
HVH21
<---------
ALFIN1
================================
RAV
--------->
ATHB12
<
-->
SPL7
---------------->
PIF3(2)
<-----------
RAV1(1)
<-----------
RAV1(2)
<---------
YAB1
-
gtgggacccgcccacgtggccacactctgccacgtggcatcctgttggcgggtcccacgggacag
gttgttacagaatgtctcttgattgttttagatca
10690100
<---------
ARR14(2)
--------->
ARR14(2)
----------->
GT1
--------->
CCA1(2)
--------->
MYB52(1)
<---------
GLK1(1)
--------->
ICU4
--------->
GLK1(1)
--------->
bZIP60(1)
--------->
ARR14(2)
<---------
bZIP60(1)
<---------
TOE2(3)
<---------
TGA2(1)
<---------
LBD16
----------->
HVH21
------>
MYB83
<-----------
RAV1(1)
<---------
ARR14(2)
---------
ANAC55(2)
------>
MYB46(1)
--------->
ALFIN1
<---------
ANAC46
-------->
ANAC55(2)
<---------
TOE2(3)
<---------
YAB1
<-------
GAMYB
<-----------
GT1
atatgtgacataatggaaacaagttatggattacaacctacattgaatgttagcattgaagagtgtgttgccatgtttttacggatatgtggatacaatg
10690200
<--------
P
<-------
GAMYB
<---------
ANAC58
<---------
ANAC58
--------->
ANAC58
<------
MYB83
--------->
ANAC58
<---------
ANAC58
<---------
ANAC58
----------->
RAV1(1)
<---------
ANAC58
<---------
ANAC58
--------->
MYB46(3)
<------
MYB46(1)
<---------
ANAC46
------>
NtERF2
<---------
MYB46(3)
<---------
ANAC58
----------->
RAV1(1)
<-----------
RAV1(1)
<---------
ANAC58
------>
NtERF2
<---------
ARR11(3)
--------->
ARR11(3)
--------->
MYB52(2)
--------->
ANAC46
---------->
DOF2
<-----------
GT1
--------->
ANAC58
<---------
WRKY38(1)
---------->
DOF2
--------->
ANAC58
<---------
WRKY12
<----------
DOF2
----------->
HVH21
<---------
YAB1
--------->
RAP2.6(2)
aaggtcaaagagatgttgggttgcgattttttgaaggccttagagtgacaaagttacttgcttgtgattgtatcaagacgccaacaacacaagaactacg
10690300
--------->
CCA1(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ALFIN1
<----------
ID1
--------->
ARR14(2)
<---------
TOE1(3)
----------->
GT1
--------->
ARR11(3)
<---------
MYB46(3)
--------->
DAG2
--------->
DAG2
<---------
ARR14(3)
<-----------
RAV1(1)
<-------
TEIL
<---------
TOE2(3)
---------->
DOF2
--------->
ARR14(3)
--------->
ATHB12
<---------
GLK1(1)
<---------
REM1(1)
--------->
AtLEC2
------>
ZmHOX2a(2)
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
tcgaattcatgaaaaagtacaaatggatcgaagatattggtcatattttagtgatttgttggagctatagatggagttcatgtgtgttaaggtgaagcct
10690400
<---------
SPL7
-
<---------
YAB1
<---------
YAB1
<
<---------
AHL20(2)
<-----------
RAV1(1)
<----
--------->
ANAC58
--------->
ANAC58
<---------
ARR11(3)
--------->
ARR11(3)
--------
--------->
ANAC58
--------->
ANAC58
--------->
ARR11(3)
<---------
AHL20(2)
<---------
TOE1(2)
<
--------->
ANAC46
----------->
HVH21
--------->
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(2)
-
aaactacaaggaatgtattggaattgacacgatagaacatcatttaatatcatggccgtatgtgatataaatatgttgttttcatatgtttgaaatagag
10690500
------->
TEIL
<---------
YAB1
--------->
ICU4
<---------
ANAC58
<---------
YAB1
------>
ZmHOX2a(2)
--------->
ATHB12
<---------
ANAC58
<---------
ICU4
<---------
ARR14(2)
-------->
HAHB4
--------->
ANAC58
------>
MYC2
--------->
YAB1
--------->
ANAC46
-------
MYC3
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------>
ZmHOX2a(1)
-----
ZAT18
<-----------
GT1
<---------
YAB1
<---------
HSFB2a(2)
-->
DOF2
<-----------
HVH21
<---------
ARR11(3)
--------->
HSFB2a(2)
-------
MYC2
--------->
ANAC58
--------->
ARR11(3)
------>
NtERF2
<-
------>
MYC3
--------->
ANAC58
<---------
TOE2(3)
--------->
ICU4
<----------
DOF2
--------->
ANAC58
<-
cacatggatcgtgtcacgatacagtagttctaacgatggtacaagataatgattatgaatttcctttgcctcctagacacaagtattatgtagttgattt
10690600
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AGI:
At5g28667.1
Description:
pseudogene, hypothetical protein
Range:
from: 10690066
to: 10691091
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.