Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->bZIP60(2)                                                                                         --------->ANAC58                                                                                     ------>NtERF2                                                                 <---------ARR14(2)--------->LBD16                                                                 --------->ARR14(2)<------NtERF2                                                               --------->LBD16    <---------ATERF1(1)                                                              <---------ANAC46   <------NtERF2                                                             <---------LBD16     --------->ATERF1(1)                                                        --------->ARR11(3)      ------>NtERF2                                                       --------->YAB1          <---------PCF5                                                      <---------YAB1           <---------PCF2   ----- ------->TEIL                                         <---------ATHB12         --------->TCP20<------ -------YAB1                     --------->YAB1    --------->TOE2(2)          --------->ATERF1(1) ---->YAB1           ---------->DOF2               --------->TOE1(2)   <----------DOF2   --------->ANAC58   atgaatcgacacaaatgcaaactaaaagaaggcaaacatcaagttgaatcaaacctatgattttgcggaaacgctttggaggggccgggccaagtcatta  8364600                       <---------ARR14(2)                       --------->ARR14(2)                       --------------->AGL15             xxx                   <---------LBD16                              <---------------AGL15         -------               <----------DOF2                                 ----------------->AGL2         -------              <---------ANAC58                              --------->ZAT18                  <-------       <-----------HVH21                                --------->ATHB12                    <-------GAMYB ----->DOF2   <---------ANAC58                         <---------YAB1                      <---------ANAC46 ---YAB1 --------->ATHB12            ----------->GT1 --------->YAB1       <---------ARR14(2)---------   aaggagatgggtcattgcttttggggataggcctagaattggttaatgggctcaaacatgagtggcccattaagagaaaccgtagcaaggcttccgttga  8364700                        =======================HOX2a_HOX2a                       <------ZmHOX2a(2)                      <---------ARR14(2)                      --------->GLK1(2)                      --------->ARR14(2)                  <---------LBD16                 <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ALFIN1------>ZmHOX2a(2)     <---------DEAR3(1)========================HOX2a_HOX2a    <---------ORA47(1)------->TEIL   ===========================HOX2a_HOX2a   ============================HOX2a_HOX2a   <------ZmHOX2a(1)  <---------AGP1       --------->TOE1(2)                   --------->ARR11(3)  ----------->HVH21 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ARR11(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <------ZmHOX2a(1)           <---------MYB52(1)          <---- -->WRKY12      ----------->HVH21   --------->ARR14(2)             <-------GAMYB<------ZmHOX2a(2) -->WRKY38(1)  --------->SPL7       <---------ARR14(2)            <---------ANAC46          <-------- --MYB52(1)  <---------SPL7   ----------->HVH21    ---------->DOF2<---------ANAC58      ------->GAMYB >LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->At4g35610<---------ANAC58     --------->MYB46(3)   acagaggacggtgatggtacgacggatctgtggtgacagataggacctccgatgaaagctaagcgatgtcgttgggactgagatcatcaacgacgaggta  8364800                          <------MYB46(1)                          <---------MYB46(3)                          <------MYB83                         <---------AtMYB61                         <---------DEAR3(1)      <---------ARR14(2)                         --------->ALFIN1     ------>ZmHOX2a(2)               <-------GAMYB                <---------TOE1(2)            <------ZmHOX2a(2)          <---------MYB46(3)             ------>ZmHOX2a(2)              <---------ARR14(2)         <--------P                   <            <------ZmHOX2a(2)               --------->ARR14(2)    --------->ALFIN1               ----     ---------->DOF2--------->MYB52(1)   ------>ZmHOX2a(2)      --------->CCA1(2)              ------ ---TEIL  <---------GLK1(1)    <---------WOX13(1)--------->ARR14(2)   <-------GAMYB   <---------ZAT14 -------AtSPL8  <---------TOE2(2)       <------ZmHOX2a(2)------>ZmHOX2a(2)   <-----------RAV1(1)-----   cacacataaaagagatcggaggtaagggtggtgatggatgagatcggatcggatttagatcggaagagatggggttgttctgttggagaacacttcaaaa  8364900                                                ------>ZmHOX2a(1)                                            <---------ALFIN1                                       <------NtERF2                                      --------->LBD16                                      ------>NtERF2                                      <---------ATERF1(1)                                     <---------ATERF1(2)                                     --------->DEAR3(1)                                     --------->ATERF1(2)                                    <------NtERF2                                    --------->DEAR4(2)                                    --------->ATERF1(1)                                   <---------RAP2.3(1)                                   <---------ATERF1(1)                                  --------->ETT(2)                       --------->At4g35610                                  <---------DEAR3(1)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                 --------->ATERF1(1)                   --------->YAB1                                <-----------HVH21                     <---------ATHB12    --------->AtLEC2          --------->HSFC1(2)--------->At4g35610 --------->WOX13(1) <---------DEAR3(1)           <---------HSFC1(2)<---------At4g35610<---------WRKY38(1) ---------------------WRI1    --------->HSFB2a(1)  ------>NtERF2   <---------WRKY12 ----->DAG2                   <---------HSFB2a(1)  <---------ZAT18--------->WRKY18(1)    ------->TEIL ---->DOF2           <------ZmHOX2a(1)--------->ORA47(1)  <-----------HVH21   ----------->GT1 ---->DAG2 ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------   aggtcgatgcagacaaaggctgaggagaaggaagggtcgccggccaactcctctgccctctgtcactggtcaatgagcagtcgaaaaaatgaatcgattg  8365000                                                                                               <-----                                                                                              <------                                                                                            ------>NtERF2                                                                                            <--------                                                                                          --------->SPL7                                                                                   <---------GLK1(1)                                                                                   --------->GLK1(1)-                                                                                --------->ANAC58    <                                                                                --------->ANAC58<----                                                                              ---------->DOF2<------NtERF2               <---------WOX13(1)                                           ------->GAMYB<---------ALFIN1             --------->ATHB12                                              --------->ANAC58--------->ANAC46            --------->ICU4                                                 --------->ANAC58<---------DEAR3(1)            <---------YAB1                           ----------->GT1     --------->MYB52(1)--------->DEAR3(1)       --------->ETT(1)                   ---------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------LBD16                 --------->AHL20(2)             --------->ANAC58   <---------ATERF1(1)   --------->ALFIN1              --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>NtERF2 >ATHB12 <------NtERF2       ---------->DOF2    ---------->DOF2       --------->ANAC58  --------->ANAC46   aaaatgtggtcgggatgattgagagaagagccaaagcataaataaaaagagaaagaggtaacaaaatgtgtgaagcaacggaaagaaatcccgacgccgg  8365100                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <---------ANAC46                    <---------ANAC58                    <---------bZIP60(2)                    <---------ANAC58                    --------->ANAC55(2)                    <---------ANAC55(2)                  <---------TGA2(2)                 ----------->HVH21        <-----------HVH21      --------->HSFC1(2)      <---------HSFC1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----DEAR3(2)    ----------->TGA1 ---DEAR3(1)    --------->SPL7                     <---------ANAC58                                <- -RAP2.3(1) <---------LBD16                        <---------ANAC58        <---------AHL20(2)      -- -------->At4g35610<-----------------------TaNAC69(2)                  --------->AHL20(2)          -- ---------At4g35610----------->STF1                <---------ANAC46   --------->ICU4               <- -----MYB52(1)--------->LBD16  <--------P    <---------YAB1           <---------YAB1              ---   tgagcagaagcttcaccggatgacgtagtaagggtagactcttcgatattagtgcttggaagagttttagtgattatttagtttgtgatatacacttacg  8365200                                         <-----------HVH21                             --------->DAG2                               --------->ZAT14                           ---------->DOF2       <---------------AtSPL8   --------->ZAT18      <---------TOE2(3)  --------->YAB1  --------->TOE2(3)                <---------ZAT18 --------HSFB2a(1)      <---------ATHB12--------->ANAC46                  <---------ZAT14 ------->HSFB2a(1)    --------->WOX13(1)--------->ANAC58                 ============================ ------->HSFC1(2)    <---------WRKY38(1)--------->ANAC58                 <---------------AGL15 ------ --------HSFC1(2)   ------------>CBF   ------->TEIL                   <-----------GT1 <-----------GT1 ---->TEIL     --------->TOE2(3)    <---------YAB1                   --------->AHL20(2)  ------------   aattttctaatgttgaacattagtcaatgaaaaggtttatgaacgtcagtactagtacatactaaactaaatttactacactaagaaattaccacaaaaa  8365300                                                                                      --------->MYB52(1)                                                                                    <------------MYB.PH3(2)                                                       --------->YAB1               <---------MYB59                                                      <---------YAB1                <---------MYB46(2)                            <---------GLK1(1)      <---------AHL20(2)               <---------MYB52(2)                 <---------AHL20(1)               --------->AHL20(2)                <---------MYB111(1)                 --------->AHL20(2)               <---------AHL20(2)              ------->TEIL        --------->YAB1 <---------LBD16      --------->TOE2(3)                     <-----------GT1 ====MADS_MADS   --------->AHL20(1)         --------->TOE1(3)                   <xxxxxxxxxxxxxxxxxxxx --->YAB1        <---------AHL20(2)       <---------ARR11(3)         ---------->DOF2<<<<<<<<<<AtMYB44 --->AGL15      --------->AHL20(2)        --------->ARR11(3)   <-----------GT1 --------->ANAC55(2)   ttatgtagaattatcaaattttatttgtggaaatgtgaatgtaagaccttaattttatgaaaattttacaacaaagaattcatgtaactaactaatttct  8365400                                                                               --------->ZAT18                                                                               <---------ZAT18                                                                               --------->ZAT14                                                                       ----------------------->TaNAC69(2)                         --------->AHL20(2)                      ---------->DOF2             --------->AHL20(2)                                 <---------AHL20(2)               ----             <---------AHL20(2)                                 --------->AHL20(2)              <----            --------->AHL20(2)                 --------->ANAC55(2)<---------TOE2(3) --------->ANAC46 xxxsmallRNA(se3)      ----------->GT1    <----------DOF2---------->DOF2<---------ZAT6          -----   catatagaaactaaattaatcttgtaagtaaattaagtctcatactttcatgtaatgccaaaagaattaaagaagtgatagtgaacacacatctcaaatt  8365500  Previous    Next  AGI:  At5g24480.1    Description:  beta-galactosidase. similar to beta-galactosidase [Arabidopsis thaliana] (TAIR:AT5G01080.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944) Range:  from: 8363834    to: 8365039    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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