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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
bZIP60(2)
--------->
ANAC58
------>
NtERF2
<---------
ARR14(2)
--------->
LBD16
--------->
ARR14(2)
<------
NtERF2
--------->
LBD16
<---------
ATERF1(1)
<---------
ANAC46
<------
NtERF2
<---------
LBD16
--------->
ATERF1(1)
--------->
ARR11(3)
------>
NtERF2
--------->
YAB1
<---------
PCF5
<---------
YAB1
<---------
PCF2
-----
------->
TEIL
<---------
ATHB12
--------->
TCP20
<------
-------
YAB1
--------->
YAB1
--------->
TOE2(2)
--------->
ATERF1(1)
---->
YAB1
---------->
DOF2
--------->
TOE1(2)
<----------
DOF2
--------->
ANAC58
atgaatcgacacaaatgcaaactaaaagaaggcaaacatcaagttgaatcaaac
ctatgattttgcggaaacgctttggaggggccgggccaagtcatta
8364600
<---------
ARR14(2)
--------->
ARR14(2)
--------------->
AGL15
xxx
<---------
LBD16
<---------------
AGL15
-------
<----------
DOF2
----------------->
AGL2
-------
<---------
ANAC58
--------->
ZAT18
<-------
<-----------
HVH21
--------->
ATHB12
<-------
GAMYB
----->
DOF2
<---------
ANAC58
<---------
YAB1
<---------
ANAC46
---
YAB1
--------->
ATHB12
----------->
GT1
--------->
YAB1
<---------
ARR14(2)
---------
aaggagatgggtcattgcttttggggataggcctagaattggttaatgggctcaaacatgagtggcccattaagagaaaccgtagcaaggcttccgttga
8364700
=======================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
GLK1(2)
--------->
ARR14(2)
<---------
LBD16
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ALFIN1
------>
ZmHOX2a(2)
<---------
DEAR3(1)
========================
HOX2a_HOX2a
<---------
ORA47(1)
------->
TEIL
===========================
HOX2a_HOX2a
============================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
AGP1
--------->
TOE1(2)
--------->
ARR11(3)
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<------
ZmHOX2a(1)
<---------
MYB52(1)
<----
-->
WRKY12
----------->
HVH21
--------->
ARR14(2)
<-------
GAMYB
<------
ZmHOX2a(2)
-->
WRKY38(1)
--------->
SPL7
<---------
ARR14(2)
<---------
ANAC46
<--------
--
MYB52(1)
<---------
SPL7
----------->
HVH21
---------->
DOF2
<---------
ANAC58
------->
GAMYB
>
LBD16
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
At4g35610
<---------
ANAC58
--------->
MYB46(3)
acagaggacggtgatggtacgacggatctgtggtgacagataggacctccgatgaaagctaagcgatgtcgttgggactgagatcatcaacgacgaggta
8364800
<------
MYB46(1)
<---------
MYB46(3)
<------
MYB83
<---------
AtMYB61
<---------
DEAR3(1)
<---------
ARR14(2)
--------->
ALFIN1
------>
ZmHOX2a(2)
<-------
GAMYB
<---------
TOE1(2)
<------
ZmHOX2a(2)
<---------
MYB46(3)
------>
ZmHOX2a(2)
<---------
ARR14(2)
<--------
P
<
<------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
ALFIN1
----
---------->
DOF2
--------->
MYB52(1)
------>
ZmHOX2a(2)
--------->
CCA1(2)
------
---
TEIL
<---------
GLK1(1)
<---------
WOX13(1)
--------->
ARR14(2)
<-------
GAMYB
<---------
ZAT14
-------
AtSPL8
<---------
TOE2(2)
<------
ZmHOX2a(2)
------>
ZmHOX2a(2)
<-----------
RAV1(1)
-----
cacacataaaagagatcggaggtaagggtggtgatggatgagatcggatcggatttagatcggaagagatggggttgttctgttggagaacacttcaaaa
8364900
------>
ZmHOX2a(1)
<---------
ALFIN1
<------
NtERF2
--------->
LBD16
------>
NtERF2
<---------
ATERF1(1)
<---------
ATERF1(2)
--------->
DEAR3(1)
--------->
ATERF1(2)
<------
NtERF2
--------->
DEAR4(2)
--------->
ATERF1(1)
<---------
RAP2.3(1)
<---------
ATERF1(1)
--------->
ETT(2)
--------->
At4g35610
<---------
DEAR3(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ATERF1(1)
--------->
YAB1
<-----------
HVH21
<---------
ATHB12
--------->
AtLEC2
--------->
HSFC1(2)
--------->
At4g35610
--------->
WOX13(1)
<---------
DEAR3(1)
<---------
HSFC1(2)
<---------
At4g35610
<---------
WRKY38(1)
---------------------
WRI1
--------->
HSFB2a(1)
------>
NtERF2
<---------
WRKY12
----->
DAG2
<---------
HSFB2a(1)
<---------
ZAT18
--------->
WRKY18(1)
------->
TEIL
---->
DOF2
<------
ZmHOX2a(1)
--------->
ORA47(1)
<-----------
HVH21
----------->
GT1
---->
DAG2
---------->
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
---------
aggtcgatgcagacaaaggctgaggagaaggaagggtcgccggccaactcctctgccctctgtcactggtcaatgagcagtcgaaaaaatgaatcgattg
8365000
<-----
<------
------>
NtERF2
<--------
--------->
SPL7
<---------
GLK1(1)
--------->
GLK1(1)
-
--------->
ANAC58
<
--------->
ANAC58
<----
---------->
DOF2
<------
NtERF2
<---------
WOX13(1)
------->
GAMYB
<---------
ALFIN1
--------->
ATHB12
--------->
ANAC58
--------->
ANAC46
--------->
ICU4
--------->
ANAC58
<---------
DEAR3(1)
<---------
YAB1
----------->
GT1
--------->
MYB52(1)
--------->
DEAR3(1)
--------->
ETT(1)
---------->
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
LBD16
--------->
AHL20(2)
--------->
ANAC58
<---------
ATERF1(1)
--------->
ALFIN1
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------>
NtERF2
>
ATHB12
<------
NtERF2
---------->
DOF2
---------->
DOF2
--------->
ANAC58
--------->
ANAC46
aaaatgtggtcgggatgattgagagaagagccaaagcat
aaataaaaagagaaagaggtaacaaaatgtgtgaagcaacggaaagaaatcccgacgccgg
8365100
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ANAC46
<---------
ANAC58
<---------
bZIP60(2)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
TGA2(2)
----------->
HVH21
<-----------
HVH21
--------->
HSFC1(2)
<---------
HSFC1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
----
DEAR3(2)
----------->
TGA1
---
DEAR3(1)
--------->
SPL7
<---------
ANAC58
<-
-
RAP2.3(1)
<---------
LBD16
<---------
ANAC58
<---------
AHL20(2)
--
-------->
At4g35610
<-----------------------
TaNAC69(2)
--------->
AHL20(2)
--
---------
At4g35610
----------->
STF1
<---------
ANAC46
--------->
ICU4
<-
-----
MYB52(1)
--------->
LBD16
<--------
P
<---------
YAB1
<---------
YAB1
---
tgagcagaagcttcaccggatgacgtagtaagggtagactcttcgatattagtgcttggaagagttttagtgattatttagtttgtgatatacacttacg
8365200
<-----------
HVH21
--------->
DAG2
--------->
ZAT14
---------->
DOF2
<---------------
AtSPL8
--------->
ZAT18
<---------
TOE2(3)
--------->
YAB1
--------->
TOE2(3)
<---------
ZAT18
--------
HSFB2a(1)
<---------
ATHB12
--------->
ANAC46
<---------
ZAT14
------->
HSFB2a(1)
--------->
WOX13(1)
--------->
ANAC58
============================
------->
HSFC1(2)
<---------
WRKY38(1)
--------->
ANAC58
<---------------
AGL15
------
--------
HSFC1(2)
------------>
CBF
------->
TEIL
<-----------
GT1
<-----------
GT1
---->
TEIL
--------->
TOE2(3)
<---------
YAB1
--------->
AHL20(2)
------------
aattttctaatgttgaacattagtcaatgaaaaggtttatgaacgtcagtactagtacatactaaactaaatttactacactaagaaattaccacaaaaa
8365300
--------->
MYB52(1)
<------------
MYB.PH3(2)
--------->
YAB1
<---------
MYB59
<---------
YAB1
<---------
MYB46(2)
<---------
GLK1(1)
<---------
AHL20(2)
<---------
MYB52(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
MYB111(1)
--------->
AHL20(2)
<---------
AHL20(2)
------->
TEIL
--------->
YAB1
<---------
LBD16
--------->
TOE2(3)
<-----------
GT1
====
MADS_MADS
--------->
AHL20(1)
--------->
TOE1(3)
<xxxxxxxxxxxxxxxxxxxx
--->
YAB1
<---------
AHL20(2)
<---------
ARR11(3)
---------->
DOF2
<<<<<<<<<<
AtMYB44
--->
AGL15
--------->
AHL20(2)
--------->
ARR11(3)
<-----------
GT1
--------->
ANAC55(2)
ttatgtagaattatcaaattttatttgtggaaatgtgaatgtaagaccttaattttatgaaaattttacaacaaagaattcatgtaactaactaatttct
8365400
--------->
ZAT18
<---------
ZAT18
--------->
ZAT14
----------------------->
TaNAC69(2)
--------->
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
<---------
AHL20(2)
----
<---------
AHL20(2)
--------->
AHL20(2)
<----
--------->
AHL20(2)
--------->
ANAC55(2)
<---------
TOE2(3)
--------->
ANAC46
xxx
smallRNA(se3)
----------->
GT1
<----------
DOF2
---------->
DOF2
<---------
ZAT6
-----
catatagaaactaaattaatcttgtaagtaaattaagtctcatactttcatgtaatgccaaaagaattaaagaagtgatagtgaacacacatctcaaatt
8365500
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AGI:
At5g24480.1
Description:
beta-galactosidase. similar to beta-galactosidase [Arabidopsis thaliana] (TAIR:AT5G01080.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944)
Range:
from: 8363834
to: 8365039
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.