Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->LBD16                                         <---------ANAC46                                         <---------ANAC58                                         <---------ANAC58                                    <<<<<<<<<TBF1                                --------->GLK1(2)            ----------->GT1      ------>ZmHOX2a(2) -----------RAV1(1)            <---------GLK1(2)        --------->WOX13(1) <---------ANAC58 --------DOF2         <----------DOF2 ------------------>SPL14             <---------ANAC46 <-------- ->HVH21 <---------YAB1      ----------->ARR10        <------ZmHOX2a(2)    <---------ANAC58 <--------   ctttgttgttcatgtttgctacttctttgatgagattcttcttccgtagagaagcgatcaatcgagtaactatagttgctgggatcgttttctcgcgttt  7997100                                                           <---------ANAC58                                                           <---------ANAC46                                                  <---------HSFC1(2)                                                  --------->HSFB2a(1)                       <--------                                                  <---------HSFB2a(1)                   --------->ATHB12                                                <---------GLK1(2)                      <---------ATHB12                         <---------TOE2(2)   --------->HSFB2a(2)            <------ZmHOX2a(2)                         <---------TOE1(2)   <---------HSFB2a(2)  <---------ANAC46  --------->LBD16 -                       --------------------->WRI1 --------->HSFC1(2)       --------->ARR11(3)      <-                       <---------ANAC58    <------ZmHOX2a(2)      <---------ANAC58------>MYB46(1) ---                       <---------ANAC58   --------->AGP1   <---------ANAC58<---------ARR11(3)   -----               <---------RAP2.3(1)        <---------ARR14(2)      <---------ANAC58------>MYB83  <----               ------>NtERF2              --------->ARR14(2)   --------->ALFIN1 --------->DEAR3(1)--- -ANAC58      <---------ANAC58            --------->ARR11(3) <-----------RAV1(1)--------->AtMYB61<--- -ANAC58      <---------ANAC58           --------->At4g35610 --------->ALFIN1  --------->At4g35610<--   caattcgaacatagttgcgcctcttccttggtttattcgaatcagatccagaagcttcttctcgtgtggctcgtttagatcacctcccgatgatttcgga  7997200           --------->DOF5.7(2)  --------->SPL7 -LBD16  <---------ANAC46 -------->LBD16                        ----------->GT1 --------HSFB2a(2)                  --------->MYB52(1)                            <---------ANAC58 ------------>AtSPL3                ------>MYB46(1)              --------->ANAC58 <---------ANAC46 ---->ARR14(2)                      ------>MYB83                 --------->ANAC58 <---------ANAC58 -----ARR14(2)                    <---------MYB46(2)        ----------->HVH21  --------->ARR14(2)   = --->ZmHOX2a(2)                  --------->ANAC46   --------->YAB1             <---------ARR14(2)   < ---ZmHOX2a(2)                 <-----------GT1   --------->WOX13(1)--------->At5g28300       -------- -------LBD16       <---------ICU4<---------MYB111(2)     ----------->GT1      --------->GLK1(2)-----   tccggacgttttcgtttactcattcttacaaattcaccaaactgcaaaaatcaatcggaattgtgacacggtaattgagagaattcgtgtgatttacgaa  7997300                                                                                    <---------LBD16       ------>ZmHOX2a(2)                                            --------->CCA1(2)  <---------WOX13(1)    ----------->GT1                            <---------ARR14(2) =============HOX2a_HOX2a  --------->AHL20(2)                      --------->ARR14(2)        <------MYB46(1) ------ZmHOX2a(1)      ----------->GT1                 --------->ARR11(3)          ----------->RAV1(2) ->ANAC46            ----------->GT1                  <------ZmHOX2a(1)    <-------TEIL      <------MYB83 ----->DOF2     --------->YAB1     <---------YAB1   <---------TOE2(3)<-------TEIL<-----------GT1   aaggattgatctatactataagaaggtgataaaatcgatgattctgagattacaaaggattttggtgaagattcagattcaatttacctggagattggtt  7997400                                                                              --------->CCA1(2)                                                                             --------->ARR14(2)                                                                 ----------->HVH21                                                                --------->LBD16                                                                <-----------HVH21                                                               <---------ANAC58 --------->ANAC58                     ------->TEIL         <---------ZAT14      <---------ANAC58 --------->ANAC58                --------->At4g35610       --------->ZAT14      --------->ANAC55(2)*TSS   <---------STY1(1)    <---------At4g35610             <------ZmHOX2a(1)       <---------SPL7   <---------ARR14(2)   <--    --------->At4g35610        <----------DOF2  --------->MYB52(1)  <---------ANAC46     --------->STY1(1)   tactggagatgaacaatccgatgaatatagaggctttaggagagttcagagaacggagaagtcgtccgtgactggaacggatacgaaaaccctaggtctg  7997500                                                <---------PCF2                                               ----------->TCP11(1)                                    --------->ARR11(3)                                    --------->AHL20(2)           --------->CCA1(2)        <---------ARR11(3)                                      <-------TEIL          --------->AHL20(1)        --------->AHL20(1)                 ----------->GT1   <------MYB83          <---------AHL20(1)        <---------AHL20(1)                --------->DAG2     ----------->GT1         --------->AHL20(2)         <---------AHL20(2)              ---------->DOF2      <------MYB46(1)   --------->At4g35610             --------->AHL20(2)           ----------->RAV1(1)     <------------   <---------At4g35610      ----------->GT1  --------->ALFIN1--------->ANAC46          <---------WOX13(1) --------DOF2             ---------->DOF2  <-----------RAV1(1) --------->ANAC46       <---------ARR14(2)   cttttagctaaatatataagacagagaagaaagtcaaatatattagtgtgggcctaaactaatacacaacaaaaggtaactcgaagtggattggtacata  7997600                                                                                        <---------AHL20(2)                                                                                <---------YAB1                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)  <--                                                                          --------->AHL20(2)      ---                                                                         <---------AHL20(1)      ----                                             <------MYB46(1)             <---------ARR11(3)      <---      <---------ARR11(3)                     <------MYB83                --------->AHL20(1)      ----     <------ZmHOX2a(1)      --------->ARR11(3)    ----------->GT1        --------->ARR11(3)      <--- ---AtSPL8        --------->AHL20(2)       <--------P               --------->AHL20(2)  --------->AHL20(2)   ttgttcaggatttttgttaattcaatatgagatttcgctatacaagttggtttagataaaaacatgtagattaaaaatatttatttttaaaaaattcaat  7997700                        ---------->DOF2                     --------->AHL20(2)                     --------->YAB1                    <---------YAB1                    --------->ICU4            ----------->GT1                <---------AHL20(2)          <---------AHL20(2)     --------------->AGL15              --------->AHL20(1)            <---------AHL20(2)     <---------------AGL15----------->GT1  --------->AHL20(2)      --------->AHL20(2)        <------MYB83 -------AHL20(2)  <---------ICU4        <---------AHL20(1)         --------->AHL20(1)   <xxxxxxxxxxxx ------>AHL20(2)  --------->YAB1<---------AHL20(2)                 <---------AHL20(2)  --------->AHL20(2) ----->AHL20(1)  <---------ATHB51 --------->YAB1      <---------AHL20(2)    ----------->GT1  <------MYB46(1) ------AHL20(2)  <---------AHL20(2)  --------->AHL20(2)           <---------AHL20(2)   <---------AHL20(1) ----->AHL20(2)  --------->AHL20(2)--------->AHL20(2)--------->AHL20(2)--------->AHL20(2)   --------- ------AHL20(1)  --------->ICU4 --------->AHL20(2)<---------AtLEC2--------->AHL20(2)   <---------AHL20(2)   ttattttttaaaaatagaaataattataaagtattaaaataatatataatttgcataaaattttgaaaataatttatattgtaaaacaaaaaatttggtc  7997800                                  <---------AHL20(2)                                <---------AHL20(2)                               <---------AHL20(1)                 <---------AHL20(2)                        ---------->DOF2                          --------->AHL20(2)            ----------->GT1    --------->ARR11(3)                <---------AHL20(2)       --------->AHL20(2)      <---------ARR11(3)         <---------YAB1                           -- xxxxsmallRNA(i)    ---------->DOF2                  <---------ICU4                           ------- >MYB59<---------AHL20(2) ----------->GT1     <-----------GT1<---------YAB1               --------->AHL20(2)   caaaacaatttatattgtaaaacaaagaaagtatatatttttgattttttactaatatttatgcttattaattttcagaaataagttgacaaaaaaattc  7997900            --------->AHL20(1)            <---------AHL20(2)            <---------AHL20(1)       <---------AHL20(2)       <---------AHL20(1)       --------->AHL20(2)    <---------AHL20(1)                                    <---------ARR11(3)    --------->AHL20(2)                          --------->TOE2(3)   <---------ARR11(3)    --------->AHL20(1)    <----------DOF2       <----------DOF2     --------->ARR11(3)   <---------AHL20(2)     <---------DAG2 --------->TOE2(3)--------->AHL20(1) ------->AHL20(2)     <---------ZAT14    --------->TOE1(3)--------->ARR11(3)               <--------- -->GLK1(2) --------->AHL20(2)        <-----------GT1     <---------AHL20(1)              <---------TOE2(3)   tataaatattttattttattagactgaactttttcagattaaaccataaactttagtgaatattttttaaaatctaaaaccatttttgtataaatgttgt  7998000  Previous    Next  AGI:  At5g23710.1    Description:  DNA binding / DNA-directed RNA polymerase. similar to unnamed protein product [Vitis vinifera] (GB:CAO62414.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23934.1); contains InterPro domain RNA polymerase Rpc34; (InterPro:IPR007832); contains InterPro domain RNA polymerase Rpc34-like (InterPro:IPR016049) Range:  from: 7996459    to: 7997482    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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