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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<<<<<<<<<
TBF1
--------->
GLK1(2)
----------->
GT1
------>
ZmHOX2a(2)
-----------
RAV1(1)
<---------
GLK1(2)
--------->
WOX13(1)
<---------
ANAC58
--------
DOF2
<----------
DOF2
------------------>
SPL14
<---------
ANAC46
<--------
->
HVH21
<---------
YAB1
----------->
ARR10
<------
ZmHOX2a(2)
<---------
ANAC58
<--------
ctttgttgttcatgtttgctacttctttgatgagattcttcttccgtagagaagcgatcaatcgagtaactatagttgctgggatcgttttctcgcgttt
7997100
<---------
ANAC58
<---------
ANAC46
<---------
HSFC1(2)
--------->
HSFB2a(1)
<--------
<---------
HSFB2a(1)
--------->
ATHB12
<---------
GLK1(2)
<---------
ATHB12
<---------
TOE2(2)
--------->
HSFB2a(2)
<------
ZmHOX2a(2)
<---------
TOE1(2)
<---------
HSFB2a(2)
<---------
ANAC46
--------->
LBD16
-
--------------------->
WRI1
--------->
HSFC1(2)
--------->
ARR11(3)
<-
<---------
ANAC58
<------
ZmHOX2a(2)
<---------
ANAC58
------>
MYB46(1)
---
<---------
ANAC58
--------->
AGP1
<---------
ANAC58
<---------
ARR11(3)
-----
<---------
RAP2.3(1)
<---------
ARR14(2)
<---------
ANAC58
------>
MYB83
<----
------>
NtERF2
--------->
ARR14(2)
--------->
ALFIN1
--------->
DEAR3(1)
---
-
ANAC58
<---------
ANAC58
--------->
ARR11(3)
<-----------
RAV1(1)
--------->
AtMYB61
<---
-
ANAC58
<---------
ANAC58
--------->
At4g35610
--------->
ALFIN1
--------->
At4g35610
<--
caattcgaacatagttgcgcctcttccttggtttattcgaatcagatccagaagcttcttctcgtgtggctcgtttagatcacctcccgatgatttcgga
7997200
--------->
DOF5.7(2)
--------->
SPL7
-
LBD16
<---------
ANAC46
-------->
LBD16
----------->
GT1
--------
HSFB2a(2)
--------->
MYB52(1)
<---------
ANAC58
------------>
AtSPL3
------>
MYB46(1)
--------->
ANAC58
<---------
ANAC46
---->
ARR14(2)
------>
MYB83
--------->
ANAC58
<---------
ANAC58
-----
ARR14(2)
<---------
MYB46(2)
----------->
HVH21
--------->
ARR14(2)
=
--->
ZmHOX2a(2)
--------->
ANAC46
--------->
YAB1
<---------
ARR14(2)
<
---
ZmHOX2a(2)
<-----------
GT1
--------->
WOX13(1)
--------->
At5g28300
--------
-------
LBD16
<---------
ICU4
<---------
MYB111(2)
----------->
GT1
--------->
GLK1(2)
-----
tccggacgttttcgtttactcat
tcttacaaattcaccaaa
ctgcaaaaatcaatcggaattgtgacacggtaattgagagaattcgtgtgatttacgaa
7997300
<---------
LBD16
------>
ZmHOX2a(2)
--------->
CCA1(2)
<---------
WOX13(1)
----------->
GT1
<---------
ARR14(2)
=============
HOX2a_HOX2a
--------->
AHL20(2)
--------->
ARR14(2)
<------
MYB46(1)
------
ZmHOX2a(1)
----------->
GT1
--------->
ARR11(3)
----------->
RAV1(2)
->
ANAC46
----------->
GT1
<------
ZmHOX2a(1)
<-------
TEIL
<------
MYB83
----->
DOF2
--------->
YAB1
<---------
YAB1
<---------
TOE2(3)
<-------
TEIL
<-----------
GT1
aaggattgatctatactataagaaggtgataaaatcgatgattctgagattacaaaggattttggtgaagattcagattcaatttac
ctggagattggtt
7997400
--------->
CCA1(2)
--------->
ARR14(2)
----------->
HVH21
--------->
LBD16
<-----------
HVH21
<---------
ANAC58
--------->
ANAC58
------->
TEIL
<---------
ZAT14
<---------
ANAC58
--------->
ANAC58
--------->
At4g35610
--------->
ZAT14
--------->
ANAC55(2)
*
TSS
<---------
STY1(1)
<---------
At4g35610
<------
ZmHOX2a(1)
<---------
SPL7
<---------
ARR14(2)
<--
--------->
At4g35610
<----------
DOF2
--------->
MYB52(1)
<---------
ANAC46
--------->
STY1(1)
tactggagatgaacaatccgatgaatatagaggctttaggagagttcagagaacggagaagtcgtccgtgactggaacggat
acgaaaaccctaggtctg
7997500
<---------
PCF2
----------->
TCP11(1)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
CCA1(2)
<---------
ARR11(3)
<-------
TEIL
--------->
AHL20(1)
--------->
AHL20(1)
----------->
GT1
<------
MYB83
<---------
AHL20(1)
<---------
AHL20(1)
--------->
DAG2
----------->
GT1
--------->
AHL20(2)
<---------
AHL20(2)
---------->
DOF2
<------
MYB46(1)
--------->
At4g35610
--------->
AHL20(2)
----------->
RAV1(1)
<------------
<---------
At4g35610
----------->
GT1
--------->
ALFIN1
--------->
ANAC46
<---------
WOX13(1)
--------
DOF2
---------->
DOF2
<-----------
RAV1(1)
--------->
ANAC46
<---------
ARR14(2)
cttttagctaaatatataagacagagaagaaagtcaaatatattagtgtgggcctaaactaatacacaacaaaaggtaactcgaagtggattggtacata
7997600
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<--
--------->
AHL20(2)
---
<---------
AHL20(1)
----
<------
MYB46(1)
<---------
ARR11(3)
<---
<---------
ARR11(3)
<------
MYB83
--------->
AHL20(1)
----
<------
ZmHOX2a(1)
--------->
ARR11(3)
----------->
GT1
--------->
ARR11(3)
<---
---
AtSPL8
--------->
AHL20(2)
<--------
P
--------->
AHL20(2)
--------->
AHL20(2)
ttgttcaggatttttgttaattcaatatgagatttcgctatacaagttggtttagataaaaacatgtagattaaaaatatttatttttaaaaaattcaat
7997700
---------->
DOF2
--------->
AHL20(2)
--------->
YAB1
<---------
YAB1
--------->
ICU4
----------->
GT1
<---------
AHL20(2)
<---------
AHL20(2)
--------------->
AGL15
--------->
AHL20(1)
<---------
AHL20(2)
<---------------
AGL15
----------->
GT1
--------->
AHL20(2)
--------->
AHL20(2)
<------
MYB83
-------
AHL20(2)
<---------
ICU4
<---------
AHL20(1)
--------->
AHL20(1)
<xxxxxxxxxxxx
------>
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
----->
AHL20(1)
<---------
ATHB51
--------->
YAB1
<---------
AHL20(2)
----------->
GT1
<------
MYB46(1)
------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
----->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
---------
------
AHL20(1)
--------->
ICU4
--------->
AHL20(2)
<---------
AtLEC2
--------->
AHL20(2)
<---------
AHL20(2)
ttattttttaaaaatagaaataattataaagtattaaaataatatataatttgcataaaattttgaaaataatttatattgtaaaacaaaaaatttggtc
7997800
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
----------->
GT1
--------->
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
YAB1
--
xxxx
smallRNA(i)
---------->
DOF2
<---------
ICU4
-------
>
MYB59
<---------
AHL20(2)
----------->
GT1
<-----------
GT1
<---------
YAB1
--------->
AHL20(2)
caaaacaatttatattgtaaaacaaagaaagtatatatttttgattttttactaatatttatgcttattaattttcagaaataagttgacaaaaaaattc
7997900
--------->
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
TOE2(3)
<---------
ARR11(3)
--------->
AHL20(1)
<----------
DOF2
<----------
DOF2
--------->
ARR11(3)
<---------
AHL20(2)
<---------
DAG2
--------->
TOE2(3)
--------->
AHL20(1)
------->
AHL20(2)
<---------
ZAT14
--------->
TOE1(3)
--------->
ARR11(3)
<---------
-->
GLK1(2)
--------->
AHL20(2)
<-----------
GT1
<---------
AHL20(1)
<---------
TOE2(3)
tataaatattttattttattagactgaactttttcagattaaaccataaactttagtgaatattttttaaaatctaaaaccatttttgtataaatgttgt
7998000
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AGI:
At5g23710.1
Description:
DNA binding / DNA-directed RNA polymerase. similar to unnamed protein product [Vitis vinifera] (GB:CAO62414.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23934.1); contains InterPro domain RNA polymerase Rpc34; (InterPro:IPR007832); contains InterPro domain RNA polymerase Rpc34-like (InterPro:IPR016049)
Range:
from: 7996459
to: 7997482
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.