Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                              <---------DEAR3(1)                  <--        --------->ANAC58                                     <------NtERF2                       <---        --------->ANAC58         <---------ANAC55(2)         --------->ATERF1(1)                 <---      ---------->DOF2            --------->ANAC55(2)        --------->LBD16                --------->HSFB2a(2)     --------->ARR14(2)          <---------ANAC58         <---------HSFB2a(2)              <---------HSFB2a(2)     <---------ARR14(2)          <---------ANAC58         --------->HSFB2a(2)           <---------MYB52(1)  <---------ANAC46              <-------TEIL              <---------LBD16              <---------SPL7  <---------TOE2(3)           <---------ARR14(2)        <-------TEIL                  <---------ANAC58  <---------ANAC55(2)         --------->ARR14(2)      <---------SPL7                  <---------ANAC58  --------->ANAC55(2)        <------ZmHOX2a(1)       --------->HSFB2a(1)           ------------------ <---------LBD16        <-----------RAV1(2)          <---------HSFB2a(1)          <----------DOF2---- -------->MYB52(1)   <------ZmHOX2a(1)              ------->TEIL<------NtERF2    <---------DAG2<-----   gattacggataagcaaaccagaaggaccagaggattcgtgatcacgagaagacggacgttcgcggaggcgattatcgtcgtagcctttccgttcgcgagg  6271100          <---------O2      <-----------HVH21   <---------At4g35610   --------->At4g35610   <---------ANAC58                                                          --------->ARR11(3)   <---------bZIP60(2)                                                       <---------ARR11(3)   <---------ANAC58                                                      ------>ZmHOX2a(1) ---------->HVH21                                                        <---------MYB52(1) -------MYB46(3)                        <---------GLK1(2)               --------->TOE2(3) ------DEAR3(1)     ------>NtERF2     --------->LBD16          <---------GLK1(1) ------AtMYB61  <---------ANAC46      ------>NtERF2            --------->GLK1(1) >SPL14----------->HVH21            <---------LBD16           --------->ARR11(3) ----->ALFIN1 <------ZmHOX2a(1)  --------->At4g35610          <---------ARR11(3)                    < ----ZAT2 --------->O2           <---------At4g35610         --------->HSFB2a(1)      --------->HSFB2a(2)   tggtgacctgtcacgaggacggggactatagcttctgctccggcttctcgctctagccatcgaagatttctcttccttaggtcttcttctcaaacaaatc  6271200                                     <---------ANAC46                          --------->TOE1(3)             --------->AHL20(2)      --------->ETT(1)   <---------LBD16        --------->TOE2(3)                                             ------>NtERF2 ---------ATHB12  ----------->GT1  <-----------HVH21  ----------->GT1       <------ZmHOX2a(1)   caatcttcggagcaattgaatagcaaaaccctaaccctgtcggaaaacgagttagagagtgaattttggagggagagaggaagaaatcgacgactgtgaa  6271300                          <---------ZAT2                          --------->ZAT2                          <---------At4g35610                       <------NtERF2                       <---------MYB52(1)                      --------->LBD16                     --------->HSFB2a(2)                     <---------HSFB2a(2)                     --------->ATERF1(2)                     --------->ETT(1)                     <---------ATERF1(2)                                                            -                    <---------LBD16                                                             -----                   --------->MYB52(1)                                                         -------              <---------ALFIN1             <----------DOF2        <----------DOF2             <------           --------->ANAC46*TSS        ----------->HVH21  <---------YAB1                    ---------         --------->ANAC46 --------->At4g35610    <---------MYB46(3)     --------->ARR14(2)<----------   agtttttcaaaacacaacacttgccggaagctggctacggtctgactttgtttgttaattcttatgggctttcaaatttgcaaactatgggcttatataa  6271400                                                                          <---------HSFB2a(2)                                                                          --------->HSFB2a(2)    ---- --------->DOF2                                                    --------->SPL7       --------->ANAC58 ---->WOX13(1)                                         --------->SPL7  --------->ARR14(2)     ------- -->AHL20(2)                              ----------->GT1        <---------SPL7         --------->ANAC58 ---AHL20(2)  <----------DOF2             <----------ID1    <---------WRKY18(1)      --------->WRKY18(1) -->TBP ---------->DOF2    <---------MYB46(3)         <---------CCA1(2)<---------ARR14(2)  *TSS ----- -TBP<----------DOF2  ---------->DOF2   ---------->DOF2------->TEIL<---------LBD16  <-----------HVH21   atcaaagctttaaaggctttgtgtcaaagttgttgacaaaaaaaaagaaaaaactcgtaccttgactcgtccggttccaaaaactcggtcacccaaaaat  6271500                              <------ZmHOX2a(1)                                ------>NtERF2                          --------->LBD16                                      --------->ORA47(1)                         <---------HSFB2a(2)                                  --------->DEAR3(1)                         --------->HSFB2a(2)                                  --------->RAP2.3(3)                         --------->LBD16                                      --------->DEAR4(1)                        --------->HSFB2a(2)                                   <---------ETT(1)                        <---------HSFB2a(2)                       <---------ETT(2)             <-----                        <---------LBD16         <---------HSFB2a(1)<-----------TGA1           -------                       --------->MYB52(1)  --------->ANAC58    --------->DEAR3(1)           <--------   --------->YAB1      ------>MYB83        --------->ANAC58  <---------At5g28300 --------->MYB46(3) ----->YAB1            ------>MYB46(1)     --------->ANAC46 <-----------GT1   --------->At1g77200 -->YAB1             --------->AtMYB61 <---------ALFIN1  <---------CCA1(2)    --------->DREB2C(2) --- ---->AHL20(2)    <-----------GT1  <------ZmHOX2a(1)    <---------SPL7       --------->RAP2.3(1)  ---   aaaaatcaaaacccttcgataaacctcccggaggagaggagacacccgaaatgttcgccgtatcaccgtcgtcattctcgccgacaaccatttctccggt  6271600                                                                                           --------->ANAC58                                                                                <---------ZAT14                                        <---------ICU4                          --------->ZAT14   <---------YAB1                       --------->YAB1                          --------->ZAT18 <-----------GT1                      <---------ARR11(3)                  --------->DEAR3(1) ----MYB52(1)                    --------->LBD16                          <---------ANAC46 --------->MYB46(3) -->LBD16                   <----------DOF2                              <------NtERF2     <---------MYB52(2) -LBD16   <<<<<<<<<TBF1    <---------ANAC58                              --------->RAP2.3(1)  ------- ------>MYB52(2)           <---------ANAC58                             <---------ZAT18    --------->ANAC58 -------->GT1            <---------ARR11(3)                             --------->ZAT18 <------ZmHOX2a(1)   gagttacaattcttcttctcgcctcaatttctttccccataatcttcacgttctctcgctcttgcctcttgtagcgccgtagtggacagaggaacgaacc  6271700                   --------->At4g35610                   <---------ZAT2                   --------->ZAT2                   <---------At4g35610                ----------->ARR10            <---------MYB46(3)           <---------AtMYB61           --------->ALFIN1                          --------->At4g35610   <---------ARR14(2)   --------->KAN4(2)                       ----------->GT1                 --------->ARR14(2)  <---------HSFB2a(1)                     --------->ANAC46                <------NtERF2  --------->HSFB2a(1)    <---------At4g35610  ---------->DOF2            --------->LBD16<---------At4g35610  <---------HSFC1(2)     --------->At4g35610--------->At5g28300        <---------LBD16  <---------ZAT2  --------->HSFC1(2) --------->ALFIN1  <---------ZAT14               --------->ANAC46   --------->At4g35610 >TEIL     <---------DEAR3(1)     <---------ARR14(2) <---------At4g35610--------->RAP2.6(2)   tcgaaaattctcggtggtgagagctggagctaagagaatactatacggtaaagatagcagagagaaactccaagccggaatcgataagttagctgatgct  6271800                                                                                <---------YAB1                                                                             <---------ARR14(2)                                                                             --------->ARR14(2)                                                                             --------->GLK1(2)                                                                            <---------ARR14(2)                                                                            <---------GLK1(2)    ----                                                                      --------->LBD16            ----                         --------->MYB52(2)                          <---------ANAC46          ------                 <---------STY1(1)                                   <---------ANAC58         -------                 --------->STY1(1)                                   <---------LBD16     --------->At4g35610        <---------DAG2   ----------->GT1                             <---------ANAC58 <---------YAB1       ----------->RAV1(2)                                          <---------LBD16 <---------ICU4     <---------ALFIN1  <--------P                                 <-----------GT1  --------->ICU4----   gtttccatcaccttaggccctagaggttagtgaattagatttcgattttggctacgatttgaagtttttttccgggcagaatctgattatgagcaaacca  6271900                                                                                       ---------->DOF2                                                                                      --------->YAB1                                                                                 <-------TEIL     <---------LBD16                                                            --------->CCA1(2)<--- -->MYB83                                                            --------->At4g35610        ----- -->MYB46(1)                                          <---------ANAC58      <---------------------WRI1 --->AtMYB61                                          <---------ANAC58     ---------->DOF2    <------ -->MYB46(3)            <---------AHL20(2)  --------->ANAC46      <---------ANAC58   <<<<<<<<<ARR2 ---->P    --------->GLK1(1)<-----------GT1 --------->O2          <---------ANAC58   <---------ATHB12   acccttctctgggatttcgaattgattttttttcaatgtggaaaccacgacgcagggcgtaatgtagtgcttgctgaaaaagatacaatcaaagtgatta  6272000  Previous    Next  AGI:  At5g18810.1    Description:  SCL28 (SC35-like splicing factor 28); RNA binding. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to unknown [Populus trichocarpa] (GB:ABK94355.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 6268720    to: 6271327    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18820.1    Description:  EMB3007 (EMBRYO DEFECTIVE 3007); ATP binding / protein binding / unfolded protein binding. similar to CPN60A (chloroplast / 60 kDa chaperonin alpha subunit), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT2G28000.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABC75363.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41975.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Chaperonin GroEL; (InterPro:IPR012723); contains InterPro domain GroEL-like chapero Range:  from: 6271491    to: 6274329    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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