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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-
<---------
DEAR3(1)
<--
--------->
ANAC58
<------
NtERF2
<---
--------->
ANAC58
<---------
ANAC55(2)
--------->
ATERF1(1)
<---
---------->
DOF2
--------->
ANAC55(2)
--------->
LBD16
--------->
HSFB2a(2)
--------->
ARR14(2)
<---------
ANAC58
<---------
HSFB2a(2)
<---------
HSFB2a(2)
<---------
ARR14(2)
<---------
ANAC58
--------->
HSFB2a(2)
<---------
MYB52(1)
<---------
ANAC46
<-------
TEIL
<---------
LBD16
<---------
SPL7
<---------
TOE2(3)
<---------
ARR14(2)
<-------
TEIL
<---------
ANAC58
<---------
ANAC55(2)
--------->
ARR14(2)
<---------
SPL7
<---------
ANAC58
--------->
ANAC55(2)
<------
ZmHOX2a(1)
--------->
HSFB2a(1)
------------------
<---------
LBD16
<-----------
RAV1(2)
<---------
HSFB2a(1)
<----------
DOF2
----
-------->
MYB52(1)
<------
ZmHOX2a(1)
------->
TEIL
<------
NtERF2
<---------
DAG2
<-----
gattacggataagcaaaccagaaggaccagaggattcgtgatcacgagaagacggacgttcgcggaggcgattatcgtcgtagcctttccgttcgcgagg
6271100
<---------
O2
<-----------
HVH21
<---------
At4g35610
--------->
At4g35610
<---------
ANAC58
--------->
ARR11(3)
<---------
bZIP60(2)
<---------
ARR11(3)
<---------
ANAC58
------>
ZmHOX2a(1)
---------->
HVH21
<---------
MYB52(1)
-------
MYB46(3)
<---------
GLK1(2)
--------->
TOE2(3)
------
DEAR3(1)
------>
NtERF2
--------->
LBD16
<---------
GLK1(1)
------
AtMYB61
<---------
ANAC46
------>
NtERF2
--------->
GLK1(1)
>
SPL14
----------->
HVH21
<---------
LBD16
--------->
ARR11(3)
----->
ALFIN1
<------
ZmHOX2a(1)
--------->
At4g35610
<---------
ARR11(3)
<
----
ZAT2
--------->
O2
<---------
At4g35610
--------->
HSFB2a(1)
--------->
HSFB2a(2)
tggtgacctgtcacgaggacggggactatagcttctgctccggcttctcgctctagccat
cgaagatttctcttccttaggtcttcttctcaaacaaatc
6271200
<---------
ANAC46
--------->
TOE1(3)
--------->
AHL20(2)
--------->
ETT(1)
<---------
LBD16
--------->
TOE2(3)
------>
NtERF2
---------
ATHB12
----------->
GT1
<-----------
HVH21
----------->
GT1
<------
ZmHOX2a(1)
caatcttcggagcaattgaatagcaaaaccctaaccctgtcggaaaacgagttagagagtgaattttggagggagagaggaagaaatcgacgactgtgaa
6271300
<---------
ZAT2
--------->
ZAT2
<---------
At4g35610
<------
NtERF2
<---------
MYB52(1)
--------->
LBD16
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
ATERF1(2)
--------->
ETT(1)
<---------
ATERF1(2)
-
<---------
LBD16
-----
--------->
MYB52(1)
-------
<---------
ALFIN1
<----------
DOF2
<----------
DOF2
<------
--------->
ANAC46
*
TSS
----------->
HVH21
<---------
YAB1
---------
--------->
ANAC46
--------->
At4g35610
<---------
MYB46(3)
--------->
ARR14(2)
<----------
agtttttcaaaacacaacacttgccgg
aagctggctacggtctgactttgtttgttaattcttatgggctttcaaatttgcaaactatgggcttatataa
6271400
<---------
HSFB2a(2)
--------->
HSFB2a(2)
----
--------->
DOF2
--------->
SPL7
--------->
ANAC58
---->
WOX13(1)
--------->
SPL7
--------->
ARR14(2)
-------
-->
AHL20(2)
----------->
GT1
<---------
SPL7
--------->
ANAC58
---
AHL20(2)
<----------
DOF2
<----------
ID1
<---------
WRKY18(1)
--------->
WRKY18(1)
-->
TBP
---------->
DOF2
<---------
MYB46(3)
<---------
CCA1(2)
<---------
ARR14(2)
*
TSS
-----
-
TBP
<----------
DOF2
---------->
DOF2
---------->
DOF2
------->
TEIL
<---------
LBD16
<-----------
HVH21
atcaaagctttaaaggctttgtgtcaaagttgttgacaaaaaaaaagaaaaaactcgtaccttgactcgtccggttccaaaaactcggtc
acccaaaaat
6271500
<------
ZmHOX2a(1)
------>
NtERF2
--------->
LBD16
--------->
ORA47(1)
<---------
HSFB2a(2)
--------->
DEAR3(1)
--------->
HSFB2a(2)
--------->
RAP2.3(3)
--------->
LBD16
--------->
DEAR4(1)
--------->
HSFB2a(2)
<---------
ETT(1)
<---------
HSFB2a(2)
<---------
ETT(2)
<-----
<---------
LBD16
<---------
HSFB2a(1)
<-----------
TGA1
-------
--------->
MYB52(1)
--------->
ANAC58
--------->
DEAR3(1)
<--------
--------->
YAB1
------>
MYB83
--------->
ANAC58
<---------
At5g28300
--------->
MYB46(3)
----->
YAB1
------>
MYB46(1)
--------->
ANAC46
<-----------
GT1
--------->
At1g77200
-->
YAB1
--------->
AtMYB61
<---------
ALFIN1
<---------
CCA1(2)
--------->
DREB2C(2)
---
---->
AHL20(2)
<-----------
GT1
<------
ZmHOX2a(1)
<---------
SPL7
--------->
RAP2.3(1)
---
aaaaatcaaaacccttcgataaacctcccggaggagaggagacacccgaa
atgttcgccgtatcaccgtcgtcattctcgccgacaaccatttctccg
gt
6271600
--------->
ANAC58
<---------
ZAT14
<---------
ICU4
--------->
ZAT14
<---------
YAB1
--------->
YAB1
--------->
ZAT18
<-----------
GT1
<---------
ARR11(3)
--------->
DEAR3(1)
----
MYB52(1)
--------->
LBD16
<---------
ANAC46
--------->
MYB46(3)
-->
LBD16
<----------
DOF2
<------
NtERF2
<---------
MYB52(2)
-
LBD16
<<<<<<<<<
TBF1
<---------
ANAC58
--------->
RAP2.3(1)
-------
------>
MYB52(2)
<---------
ANAC58
<---------
ZAT18
--------->
ANAC58
-------->
GT1
<---------
ARR11(3)
--------->
ZAT18
<------
ZmHOX2a(1)
gagttacaattcttcttctcgcctcaatttctttccccataatcttcacgttctctcgctcttgcctcttgtag
cgccgtagtggacagaggaacgaacc
6271700
--------->
At4g35610
<---------
ZAT2
--------->
ZAT2
<---------
At4g35610
----------->
ARR10
<---------
MYB46(3)
<---------
AtMYB61
--------->
ALFIN1
--------->
At4g35610
<---------
ARR14(2)
--------->
KAN4(2)
----------->
GT1
--------->
ARR14(2)
<---------
HSFB2a(1)
--------->
ANAC46
<------
NtERF2
--------->
HSFB2a(1)
<---------
At4g35610
---------->
DOF2
--------->
LBD16
<---------
At4g35610
<---------
HSFC1(2)
--------->
At4g35610
--------->
At5g28300
<---------
LBD16
<---------
ZAT2
--------->
HSFC1(2)
--------->
ALFIN1
<---------
ZAT14
--------->
ANAC46
--------->
At4g35610
>
TEIL
<---------
DEAR3(1)
<---------
ARR14(2)
<---------
At4g35610
--------->
RAP2.6(2)
tcgaaaattctcggtggtgagagctggagctaagagaatactatacggtaaagatagcagagagaaactccaagccggaatcgataagttagctgatgct
6271800
<---------
YAB1
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(2)
<---------
ARR14(2)
<---------
GLK1(2)
----
--------->
LBD16
----
--------->
MYB52(2)
<---------
ANAC46
------
<---------
STY1(1)
<---------
ANAC58
-------
--------->
STY1(1)
<---------
LBD16
--------->
At4g35610
<---------
DAG2
----------->
GT1
<---------
ANAC58
<---------
YAB1
----------->
RAV1(2)
<---------
LBD16
<---------
ICU4
<---------
ALFIN1
<--------
P
<-----------
GT1
--------->
ICU4
----
gtttccatcaccttaggccctagag
gttagtgaattagatttcgattttggctacgatttgaagtttttttccgggcagaatctgattatgagcaaacca
6271900
---------->
DOF2
--------->
YAB1
<-------
TEIL
<---------
LBD16
--------->
CCA1(2)
<---
-->
MYB83
--------->
At4g35610
-----
-->
MYB46(1)
<---------
ANAC58
<---------------------
WRI1
--->
AtMYB61
<---------
ANAC58
---------->
DOF2
<------
-->
MYB46(3)
<---------
AHL20(2)
--------->
ANAC46
<---------
ANAC58
<<<<<<<<<
ARR2
---->
P
--------->
GLK1(1)
<-----------
GT1
--------->
O2
<---------
ANAC58
<---------
ATHB12
acccttctctgggatttcgaattgattttttttcaatgtggaaaccacgacgcag
ggcgtaatgtagtgcttgctgaaaaagatacaatcaaagtgatta
6272000
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AGI:
At5g18810.1
Description:
SCL28 (SC35-like splicing factor 28); RNA binding. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to unknown [Populus trichocarpa] (GB:ABK94355.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 6268720
to: 6271327
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g18820.1
Description:
EMB3007 (EMBRYO DEFECTIVE 3007); ATP binding / protein binding / unfolded protein binding. similar to CPN60A (chloroplast / 60 kDa chaperonin alpha subunit), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT2G28000.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABC75363.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41975.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Chaperonin GroEL; (InterPro:IPR012723); contains InterPro domain GroEL-like chapero
Range:
from: 6271491
to: 6274329
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.