Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <------ZmHOX2a(1)                                                                            --------->TOE2(2) ---------DOF2                                                              --------->TOE1(2) ------YAB1                                                                ----------------->AGL1 -----ARR11(3)                            <---------AHL20(2)          --------->YAB1 ---->ARR11(3)                --------->AHL20(2)<---------TOE2(3)     <---------ICU4        --------- -----AHL20(1)             --------->TOE2(3)    <---------TOE1(3)     <--------HAHB4      --------->ANAC58 --->RVE1(1)              ----------->GT1<---------AHL20(2)          <---------AHL20(2)   --------->ANAC58 --->CCA1(1)        --------->At5g28300  --------->AHL20(2)          <---------YAB1----------->GT1 ->YAB1            ----------->GT1  --------->ANAC55(2)      <---------MYB52(1) ===================== -YAB1           --------->At4g35610<---------ANAC55(2)     <-------GAMYB  <-----------------AGL1   tctttgaatcacatatgtaagcagtaattcgttaaaatatgtattaatttgaggtttttctccgttaatctataattacctaggaaggaaacaagcataa  4743000                                           --------->AHL20(2)                                           <---------AHL20(2)                                        <---------AHL20(2)                                        <--------ATHB1                                        --------->AHL20(2)                --------->AHL20(2)      <---------ICU4                           ------->GAMYB                <---------AHL20(2)      --------->ATHB51                        --------->MYB46(3)            <---------YAB1             <---------ATHB51                       --------->MYB52(1)            --------->ICU4             --------->ICU4                      --------->ANAC58       ---         <------ZmHOX2a(2)             <---------ATHB12                    --------->ANAC58       <--        --------->ARR11(3)   <---------ARR11(3)               <---------ICU4<---------ATHB12      ---    --------->YAB1           --------->GLK1(2)            ----------->GT1 --------->WOX13(1) ------->GAMYB >YAB1  <---------ARR11(3)   --------->ARR11(3)   --------->TOE1(3)<---------ANAC46       --------->MYB52(1) ===============HOX2a_HOX2a  <-----------ARR10    --------->TOE2(3)----------->RAV1(2)--------->GLK1(2)   actgaatcaagatcaagattaatttcccaaaaatcttgccaataatttaaaacgttagagatgaaaattacctggacaatcaacgacgattctaacggag  4743100                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                <-----------HVH21                                                                                <-----------TGA1                                                                               --------->TGA1a<------                                                                              --------->RAP2.3(1)                                                                             ------>NtERF2   --------                                                                             --------->LBD16 <------ZmHOX2a(2)                                                                            <---------RAP2.6(2)                                                                            <---------LBD16 ---------                                                                   ------>MYB46(1)          <--------                                                                   ------>MYB83======================                                         --------->ANAC58          --------->GLK1(2)    --------->YAB1   --------->AtLEC2                      --------->ANAC58 --------->ZAT6   <---------LBD16  <-------- ------>ARR14(2)              --------->ANAC58    ----------->RAV1(1)    <---------ARR14(2) --------- -------ARR14(2)              --------->ANAC58   --------->AtMYB61--------->WOX13(1)  --------->GLK1(2) ------>GLK1(2)     <-----------GT1 <---------TOE2(3)--------->ANAC46    --------->ARR14(2) ---------   tatccatgaacaagaagacgtttaacaatggcacgaccaaggtaagaaacaccaccagtaacacaaaccaatctgtttccggcgtcagaatcaagatcca  4743200                       =====================================bZIP_DOF                       ===================================================MYC_MYB                       --------->ANAC58                       =====================================bZIP_DOF                       --------->ANAC58                       <---------O2                       --------->TGA1a                       <---------TGA1a                       --------->O2                      ------>NtERF2                   ------>NtERF2                                          <-------MYC3                   --------->ABI4(1)                                  ------>NtERF2                  --------->RAP2.6(2)                                 <---------ZAT18                  --------->DREB2C(2)                                <---------ANAC46                  --------->DEAR4(1)                                 --------->DEAR3(1)                  --------->DEAR3(1)                                <------NtERF2 <----------DOF2                  ===============MYC_MYB                            --------->ATERF1(1)                  --------->ANAC58                                  --------->RAP2.3(1)                  ------->GAMYB                                    <---------ATERF1(1)                  --------->ANAC46                                 <---------RAP2.3(1)                  --------->ANAC58                                 <---------ORA47(2)                 --------->MYB46(3)                                <---------DEAR4(2)          ------ -TEIL--------->HSFB2a(2)                                         <---------RRTF1(3)           ------ ->CCA1(2)     <---------ALFIN1                                   <---------RAP2.3(2)         ------- >AGP1<---------HSFB2a(2)                        <----------DOF2  <---------DEAR3(1)        --------- -ARR14(2)     --------->AtMYB61            <------NtERF2        --------->At4g35610        ------>NtERF2 =========================MYC_MYB         <---------DEAR3(1)     <---------At4g35610       --------->DEAR3(1) -ARR11(3)    --------->MYB46(3)    --------->ARR14(2)         ---------->CDC5------->TEIL<---------LBD16 >ARR11(3)   <---------At5g28300    <---------ARR14(2)   <----------DOF2  ------->MYC3 --------->At4g35610 >ARR14(2)  <-----------GT1    --------->At4g35610    ------>ZmHOX2a(1)<---------ALFIN1<---------At4g35610   tggcatttctagatttaccaccgccacgagagcctctgaatccgtcgtcgtctttcctcctttgcacagcggcgcacatgaactctttaagctccgccga  4743300                           --------->YAB1                     --------->YAB1             --------->ANAC58             --------->ANAC58                                                                    ----      --------->ANAC46 ------>ZmHOX2a(1)                                                --------->ZAT18 >NtERF2  <---------SPL7  <---------YAB1                                                <---------ZAT14 --->HSFB2a(2)  <-------TEIL                                               <-----------GT1   <------- -->DEAR3(1)<---------TOE1(2)      <------NtERF2  ---------->DOF2  <------ZmHOX2a(2)    --------->ZAT14 >LBD16<-----------HVH21--------->YAB1 ---------->DOF2             ==================================   gaacgtctccgtcgcacgtacaatcctcataatagtcggagtaaagaatcaacaaaggaacgagttgagatcgaattatacaattctttgttcactgtcc  4743400                                                                        <---------CCA1(1)       <---------MYB52(1)                                               <---------RVE1(1)      <-------GAMYB                                             <------ZmHOX2a(1)     <---------ANAC46                                         <---------TOE2(3)      ---------->DOF2     <---------ANAC58                              <------------CBF    --------->ARR11(3)           <     <---------ANAC58                     <-------TEIL      --------->ICU4<-----------TBP           < -->ZmHOX2a(1)                           --------->CCA1(2)--------->CCA1(2) <---------AHL20(2)     <- ----HVH21                   ----------->GT1      <------ZmHOX2a(1)    <---------ARR14(2)          -- ===HOX2a_HOX2a      <-------TEIL ---------->DOF2*TSS----------->GT1   <---------ARR11(3)       -----   tctggtttcgttggctctataggttcagagaaggtagaaagagatacacagaggattgagaaatgaggaagaagatatttatagagagaaagaaacagag  4743500             --------->ANAC58             --------->ANAC46                                                              --------->ZAT2       <-----------HVH21                                                                   <---------At4g35610      --------->bZIP60(2)                                                                  --------->At4g35610      --------->ANAC46                                                                     <---------ZAT2 <---------MYB52(1)                                                                      <-----------RAV1(2) -------GAMYB--------->ANAC58                                                         --------->At4g35610 ---------RAP2.6(3)                                                            <----------DOF2 --------MYB46(3)                                              ----------->GT1 <---------DAG2 --------->GT1             <---------GLK1(2)      --------->AHL20(2)         --------->At4g35610 <--- ------->MYB.PH3(1)    ---------->DOF2<---------AHL20(2)<----------ID1       <---------At4g35610 <---   gccgttacacatcacacgagaatgctaaagagtctctcatttttttgaagaaaaaaataagacaagtgtaatacaattcagctttatcggctcagcttgg  4743600                                                                                 --------->ANAC55(2)                                              <---------YAB1                     <---------ANAC55(2)                                             <---------AHL20(2)                 <-------TEIL                                           <---------YAB1                  <---------AHL20(2)      <----------DOF2                    <---------AHL20(2)      <---------------AGL15  <----------DOF2    <------ZmHOX2a(2)  --------->ICU4  --------->YAB1  ----------->GT1         ----- ------ANAC58  --------->ARR14(2)       --------->AHL20(2) ---------->DOF2 --------->AHL20(2)   <---- ------ANAC58  <---------ARR14(2)<---------ANAC46<-----------GT1 --------------->AGL15 <---------AHL20(2)   cttcctttctttatacgaatacgatcccatctacggtgtatatttattattttacctataaaaaagactataaatagttaaatacgtttttatttgttcc  4743700                  <------ZmHOX2a(2)                 --------->ARR11(3)            <-----------HVH21           <----------DOF2        <---------ARR11(3)        --------->ARR11(3)       --------->GLK1(1)       <---------GLK1(1)          ------->TEIL          <---------YAB1       <---------CCA1(2)  --------->YAB1             --------->ICU4                   <---------YAB1 ---->HSFB2a(2) <---------At4g35610               --------->AHL20(2)             <---------YAB1 -----HSFB2a(2) --------->At4g35610             ----------->GT1        <---------ARR11(3)          <-   aaaaacctgatatctttcagatcacctatggtaatgtatatgaagtgactaagtaaatatcaaagtttatcaagaactaaattatgttattagtctctta  4743800                                                            ---------->DOF2        <-----------RAV1(1)                          --------->AHL20(2)       <---------YAB1                              --------->ANAC55(2)     --------->ATHB51                              --------->ANAC58    <---------YAB1                                 ----------->GT1 <---------AHL20(2)                                --------->ANAC58                         <-------- <---------YAB1                 <---------GLK1(2)  <---------ANAC55(2)            <<<<<<<<<TBF1 --------ICU4       <---------AHL20(2)      --------->AHL20(2)----------->GT1 <-----------GT1     <--   atttttattattgttggagtatgtaaatgtaatagaatttgtttaaaaaaatcaagtaattacaaagttatacagggttttttcttcttcttatattatg  4743900  Previous    Next  AGI:  At5g14700.1    Description:  cinnamoyl-CoA reductase-related. similar to cinnamoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT4G30470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14759.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 4740255    to: 4743449    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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