Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          ----------->GT1         <---------ARR11(3)                                             <---------TOE2(3)         --------->ARR11(3)                                     <-------TEIL        --------->GLK1(1)                                   <---------YAB1        <---------CCA1(2)                                  <---------AHL20(2)         ----------->GT1 -------->YAB1                          <---------ZAT6     --------->AHL20(2)       ---------->DOF2 <   aataagactgatatctactaaatgtgatttgctatactagtagagctagtagtagcaagattaaaattcatattaagaaaaaatggaaaagaaaaacatg  4218500                                                         --------->ANAC58                                                         --------->ANAC58                                                   <---------At4g35610                                                   --------->At4g35610                                               <-----------HVH21                                           <---------AHL20(2) <---------HSFC1(1)                       <---------AHL20(2)               --------->MYB52(1) <---------HSFB2a(2)                      --------->AHL20(2)             --------->At5g28300 ------>MYB83 --------->HSFB2a(2)                      <---------AHL20(1)           --------->ZAT6        ------>MYB46(1) --------->HSFC1(1)                       --------->AHL20(1)    ----------->HVH21          <---------MYB59 ---------ANAC46 <------ZmHOX2a(2)       --------->YAB1  >>>>>>>>>>>>>>>>>LFY           <-----------GT1   tttcgagaaaaatatacagatcagagactagagtagaaaacaaatataatgtcagaagaacccaatgtgacgaacagtaacagaaacatgttaccaaatt  4218600                                                                --------->ARR11(3)                                                                --------->ARR14(2)                    <---------ICU4                             --------->RVE1(1)            <---------YAB1                             --------->ARR14(2)           --------->AHL20(2)                          <---------ARR14(2)           <---------AHL20(2)                        --------->LBD16         <---------AHL20(2)                         <---------ANAC46      <---------ARR11(3)                            <---------HSFB2a(2)                  --------->AHL20(2)      --------->AHL20(1)                            --------->HSFB2a(2)     <---------ANAC58      --------->ARR11(3)               <---------GLK1(1)--------->CCA1(2)   <---------ANAC58      <---------AHL20(1)        --------->ATHB12   <---------LBD16    <----------DOF2 --------->WOX13(1)     --------->CCA1(2)         <-------TEIL      <-----------GT1<---------ARR11(3) --------->ANAC46    <---------ARR11(3)         <---------YAB1<---------MYB52(1)--------->CCA1(1)   --------->ANAC58    --------->ARR11(3)       --------->YAB1 <-------GAMYB  --------->AHL20(2)      --------->ANAC58 -   tttgaagatatatttttataaaacattacaatgttcattggacttccgttatttccggatataaaatatcttctttctgcgtagcaagcaattacattac  4218700                                          --------->AHL20(2)                                          <---------AHL20(2)                                          --------->AHL20(1)                                         --------->AHL20(2)                                         <---------AHL20(2)                                      --------->AHL20(2)                                      <---------AHL20(1)                                      --------->AHL20(1)                                      <---------AHL20(2)                                  --------->ATHB12                                  -------->ATHB1                     <---------ANAC58          <---------TOE2(3)       <---------ICU4                     <---------ANAC58               - <---------ANAC55(2)             <---------ATHB12                 <--------P                       -- ----------->GT1       <-------MYC3  --------->AHL20(2)           --------->ALFIN1             <----- <------MYB46(1)       ------->MYC3--------->TOE2(3)--------->ANAC58<------MYB46(1)           ------- <------MYB83   --------->AHL20(2)<--------HAHB4    <---------ANAC55(2)        --------->YAB1-------- -------->MYB59 <---------AHL20(2)--------->YAB1    --------->ANAC58<------MYB83            ---------   attaggtatattaagaatttaaacatgtgttttgaatcattaaattaattagataagtaagagaagaggttgggagcctaataaaaacaaaacaaaaagg  4218800          <---------ANAC58                             <-------GAMYB      --------->ARR14(2)                               ----------->GT1      <---------ARR14(2)                              <---------ANAC58 -------->DAG2   <------------CBF                     ----------->GT1                             <-- -------->DOF2------------>CBF                        <---------ANAC58                            --- -----ID1 <---------ANAC58           ---------->DOF2 <---------TOE1(2)                            --- ---->GT1<------MYB46(1)       ---------->DOF2     ------->PIF5                                   <-- ->DAG2  <------MYB83      ---------->DOF2         <-------PIF5<---------ANAC55(2)         *TSS   === ->DOF2 <---------AtMYB61<---------RAP2.6(3)  ------->TEIL     --------->ANAC55(2)   --------->AHL20(2)   aaaaagtggataggttgccaattgtgccgaaaagaaagagaaagcatgaacctcgtgcgttaaataagtatcagagacatactacattttaaaaactctc  4218900                     <---------ICU4                    <---------YAB1                    --------->ICU4            ------------>MYB.PH3(1)            --------->ARR14(2)            <---------ARR14(2)                      --------->ARR11(3)        --------->YAB1                              <---------ARR11(3)     <---------GLK1(1)                              --------->ARR14(2)                              -     --------->GLK1(1)     ------>ZmHOX2a(1)        <---------ARR11(1)                       -------- -------TGA1a    <---------MYB52(1)    --------->At4g35610        <---------ARR11(3)       <------ZmHOX2a(2) ------>TGA1a  ----------->GT1         <---------At4g35610    <---------ANAC58            --------->ARR11(3) ------>O2  --------->GLK1(2)    <---------AHL20(2) <---------ARR14(2)             --------------->AGL15 -------O2 <---------GLK1(2) XXXXXXXXXXXXXXXXXXXX>MIR774B*    <---------ANAC58 <----------DOF2      < ========================MYC_MYB--------->AHL20(2) <---------CCA1(2)------>ZmHOX2a(2)     <---------ARR11(3)   acatgagaaatcagaatccgttattattcctccatttattcatctcaaaacccatatctctctgtcttgatctctctctcactttctaataagatcaaag  4219000                                                                                             ------>ZmHOX2a(2)                                                                                        <---------HSFB2a(2)                                                                                        --------->HSFB2a(2)              --------->TOE2(3)                                                    --------->HSFC1(2)            -------->P                                                             <---------HSFC1(2)         <---------At4g35610                                     ------>ZmHOX2a(1) --------->HSFB2a(1)         --------->At4g35610                                     ===================================HOX2a_HOX2a        --------->ANAC58                                    ------->GAMYB          <---------HSFB2a(1)      ---------->DOF2           --------->TOE1(1)       --------->MYB46(3)     --------->LBD16    --------->ETT(2)            --------->TOE2(1)      ------>MYB83           <---------HSFB2a(2) <-- -------->ARR11(3)             <---------LBD16         ------>MYB46(1)        --------->HSFB2a(2)---- -->DOF2--------->ANAC58       ------>ZmHOX2a(1)    --------->MYB46(3)        --------->HSFC1(1) <--- ---------ARR11(3)        <---------GLK1(1)     <---------MYB52(2)            <---------HSFC1(1)-----   aagatgtcgaaagctaccatagaactcgatttcctcggacttgagaagaaacaaaccaacaacgctcctaagcctaagttccagaaatttctcgatcgcc  4219100                    <------MYB46(1)                    <------MYB83                                                          <---------RVE1(1)          <---------TOE1(2)                                                               --------->GLK1(1)         --------->LBD16                                                          ----------->RAV1(2)        <---------TOE1(1)                                                      --------->GLK1(1)   --------->HSFC1(2)                                              <---------AHL20(2)    --------->ARR14(2)  <---------TOE1(2)<---------AtMYB61                              <---------AHL20(1)     <---------ARR11(3) ----NtERF2      <---------MYB52(1)                               --------->AHL20(2)     --------->ARR11(3) -->NtERF2<---------TOE2(2)                      <---------ANAC58 <---------AHL20(2)     <---------ARR14(2) --------HVH21 --------->MYB52(2)      <----------DOF2   ---------->DOF2       <---------GLK1(1)    < ---->DEAR3(1)<-------TEIL   ---------->ID1      <---------ANAC58 --------->AHL20(1)------>ZmHOX2a(1)   gtcgtagtttccgaggttcgtttggtttttagtcgctctctcttttttttttcttgcgataaatcgaatttattcatatggaactcctgcagatattcaa  4219200                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                        --------->ARR14(2)                                                                                      <------MYB46(1)                                                                                      <------MYB83                    --------->LBD16                                                   <---------DEAR3(2)                  <---------LBD16                                                    --------->MYB52(2)                  ------>ZmHOX2a(2)          <<<<<<<<<<<<<<<<<LFY       --------->At4g35610<---------ANAC55(1)                 <------ZmHOX2a(2)        --------->At4g35610        <---------At4g35610<---------ARR14(2)                <---------ARR14(2)        <---------At4g35610     <-------TEIL     <---------MYB52(1) -------TEIL    --------->ARR14(2)     <---------MYB52(1)     <---------YAB1      <---------SPL7   ggtgcgatttcgaaaatcgatccggagattatcaaatcgctgttagcttccactggaaacaattccgattcatcggctaaatctcgttcggttccgtcta  4219300                                     <---------WRKY38(1)                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)   <-------MYC3                    --------->ARR14(2)   ------->MYC3                    --------->AGP1   <---------WRKY12                    --------->ARR11(3)  --------->O2<-----------RAV1(2)                    <---------ARR14(2)  --------->ANAC58                   --------->At4g35610  --------->ANAC58                   --------->DAG2          <------ZmHOX2a(2)       --------->LBD16--------->ANAC58      --------->LBD16         --------->ARR11(3)     <---------LBD16  --------->ANAC58     --------->HSFB2a(2)         <---------ARR11(3)   <-----------GT1    --------->ANAC46     <---------HSFB2a(2)         <---------ARR14(2)  ----------------------->TaNAC69(2)      <---------LBD16             <---         --------->ARR14(2)--------->GLK1(1)<---------CCA1(2)     <----------DOF2                <---       ----------->ARR10--------->LBD16 --------->ANAC46        ---------->ID1        <-----------GT1 --------->LBD16   <---------At4g35610<---------ALFIN1  <---------RVE1(1) ---------->DOF2<----------DOF2   ctccgagggaagatcagcctcagatcccgatttctccggtccacgcgtctctcgccaggtatttttgtctttccggtaaagttttttttttctttctaac  4219400  Previous    Next  AGI:  At5g13220.1    Description:  JAS1/JAZ10/TIFY9 (JASMONATE-ZIM-DOMAIN PROTEIN 10). Identical to Protein TIFY 9 (TIFY9) [Arabidopsis Thaliana] (GB:Q93ZM9;GB:Q3E9I1;GB:Q3E9I2;GB:Q9LYV4); similar to JAZ12/TIFY3B (JASMONATE-ZIM-DOMAIN PROTEIN 12) [Arabidopsis thaliana] (TAIR:AT5G20900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60098.1); contains InterPro domain ZIM (InterPro:IPR010399) Range:  from: 4218891    to: 4220817    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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