Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ---------->DOF2                                                      <------MYB46(1)                                                      <---------MYB46(3)                                                      <------MYB83                                                     <---------MYB46(3)                               <-----------GT1      <---------MYB52(1)       <---------MYB52(1)------        --------->ICU4     <----------DOF2         <-------GAMYB----------->GT1   <---------AHL20(2) ----->ZmHOX2a(2)   <----------DOF2   <-----------GT1<---------AtMYB61   <-----------GT1     --------   gatcgatgtaagaattgtgtttcttttggctttaaactattttccatttactccgttggtgagaaagagttatattttcgttatatatatgtaagtgaag  3359800                                                                                     <-----------GT1                                                                                   <---------YAB1                                                                                 <--------HAHB4                                                                                 <---------ICU4                             ---------->DOF2                                     --------->ATHB51                       <----------ID1                                           <---------YAB1                       ----------->GT1                                       <---------YAB1                 <----------ID1                                         --------->YAB1    <------ZmHOX2a(2)    ----------->GT1  ---------->DOF2                                    <---------ICU4<---------TOE2(3) ----->GT1     ---------->DOF2                                --------->REM1(1) --------->ICU4 ->ZAT14      ------------------------>ANAC81    <---------------AtSPL8<---------ATHB12 ------->GAMYB   tcaaatttgttaaaaaaaaaagaaaaagaaaaaaagaagtgaagtttgttttgagtacaaaactacaacttcaaacattaccattattaacgatccaaaa  3359900                                                                                                 ----                                                                                                 <---                                                                    <------NtERF2                ----                                                                   --------->LBD16               ----                                                                   ----------->GT1              <----                                                                 <---------LBD16               ------                                                               ------>ZmHOX2a(1)              <------ZmHOX2a(2)                                                             ----------->RAV1(2)             --------                                                            <------ZmHOX2a(2)                <-------                                                           <---------ARR14(2)            <---------LBD16                                              <----------DOF2------>ZmHOX2a(2)          <-----------GT1                                    --------->ARR11(3)     --------->ARR11(3)       <---------ARR11(3)                                    <---------ARR14(2) <---------LBD16              <---------GLK1(2)                                    <---------GLK1(2) <-----------GT1      ---------->DOF2   --------    <---------YAB1                 <------------------------ANAC81<---------ANAC46  --------->ARR11(3)  --------->TOE2(3)        <-----------GT1---------->ID1   --------->ARR14(2)     ----------->ARR10   catatgttaattgtttataccaaaactattttccatcagattttgtctctttgatttttcggatcctggcggaaaaaaaaagagaagatttttcggatcc  3360000          --------->CCA1(2)         --------->ARR11(3)         <---------ARR14(2) ----->HSFB2a(2)                                                 <---------ANAC58              ------ ------HSFB2a(2)                                      <---------TOE2(3)                      ------>MYB83 ----->LBD16                                          <---------TOE1(3)                      -------- -->ZmHOX2a(1)                                       <---------At5g28300                     ------>MYB46(1) -----LBD16                                     --------->AHL20(2)                          --------- >ZmHOX2a(2)                  ----------->RAV1(1)   <-----------GT1          <---------GLK1(2)------- ->ARR11(3)            ---------->DOF2         <---------YAB1    <---------ANAC46         --------->MYB46(3) --ARR14(2)        <-------GAMYB               --------->ICU4    <---------ANAC58   --------->ZAT6 ->ARR14(2)       ----------->GT1      --------->TOE2(3)    <-----------RAV1(1)   <-----------GT1   tggaaatatcagatataggcccgttaaaagcccaacaatttcattagttattatttacggttttgttgtgtgttttccatattcttactctatccaaccg  3360100                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                 <---------ARR14(2)                 --------->ARR14(2)             ------>ZmHOX2a(2)             ----------------->AGL3           --------->ARR14(2)                        ------->GAMYB --------->TOE2(3)       <---------LBD16 <---------ARR14(2)           <-----------RAV1(2)     <---------ARR14(2)--------->ARR14(2)    <------NtERF2<------NtERF2     --------->ARR14(2)<---------ARR11(3)   <---------DEAR3(2)     --------->TOE1(3)           <----- ->GAMYB --------->LBD16--------->CCA1(2)   ------>NtERF2------>NtERF2                        ------- >P  --------->GLK1(2) --------->AGP1      <---------DEAR3(1)   <-----------GT1              <------- >MYB52(1) <---------ARR14(2)         --------->ARR14(2)----------->HVH21   ---------->DOF2 <-------- -->MYB46(3)<------ZmHOX2a(2)        <---------CCA1(2)--------->ANAC46    *TSS         <-----------GT1   aaacccgaatccggatccaaatccagatccgaagccttcatatcgtcggcatcaacaggcgacgaattacctcaaactcaaagctaaatttacaggcgga  3360200                                     <---------At4g35610     --------->ARR14(2)              --------->ZAT14     <---------ARR14(2)    --------->WOX13(1)                                                       - -NtERF2               ----------->GT1                                                   ---------->DOF2 -->LBD16              <---------ANAC46                             <------ZmHOX2a(2)<---------At4g35610 --ANAC46           <----------DOF2  <---------ZAT14  --------->HSFB2a(2)            --------->At4g35610 -LBD16    <---------TOE1(2) <---------ATHB12         <---------HSFB2a(2)    <----------DOF2    <----   gaagttggattcgaaggaacgtctttcgtaaatcaattctgctctgtaactagtttctgtaagtgtttggatcaatattctttgttaagctcaaagttaa  3360300                                                                                                   <-                            <---------MYB52(1)                                 <---------ANAC58    <-                        <---------At5g28300                                    <---------ANAC58 <----                       <-----------GT1                                    --------->ATHB12    <------                     <---------ARR11(3)          <---------ARR11(3)       <---------ICU4   <--------- ------>TEIL<---------GLK1(2)                    --------->ARR11(3)   <-----------GT1     <---------- -----TOE2(3)  <-----------GT1----------->GT1---------->DOF2     <----------DOF2 <---------At4g35610   tgaatttggaattggattttcaatatcaccgttcgtaaaatgcttcagaaagatgtctgaattctctctttgttactcattgcttctgatcactgtcggt  3360400                                                               <-----------GT1                                                            --------->YAB1                                                            --------->TOE1(3)                                                 <---------DEAR3(2) ----------RAV1(1)                <---------ANAC58          --------->TOE2(3) --------ANAC46                   <---------ANAC58        <---------ARR11(3) -----MYB52(1)           <------ZmHOX2a(1)      <---------DREB2C(2)                        --------->ANAC46 ---DEAR3(2)        <---------REM1(1)        <-----------RAV1(1)               <---------ANAC46 --HVH21            --------->ALFIN1<---------At4g35610   --------->ARR11(3) <---------ANAC46 -RAV1(1)    <---------ETT(1)<----------DOF2--------->MYB59<---------YAB1 <-----------RAV1(1)   tttgtgggtttaagtccgacaagtgtaggagcttttgcttctgagttatgtcggttttattatcttaactatatatgtgttgtgtttttttatacagaat  3360500                                                                                                  <XX                                                                                                <----                                                                                                -----                                                                                              -------                                                                                             --------                                                      --------->MYB52(1)                     <-------                                                     --------->TOE1(2)                     --------->YAB1                                             --------->ZAT18                               <---------ICU4                                             --------->At4g35610     <---------TOE2(3)    --------->ICU4                                           --------->ZAT18         ---------->DOF2        <---------YAB1                                <---------ANAC58    <---------MYB52(2)                 --------->ICU4                                <---------ANAC58    --------->MYB46(3) <------ZmHOX2a(1)--------->YAB1                        <---------MYB52(1) <---------ZAT18  ------>NtERF2              <---------YAB1   tgaaacttaacttacatacaatctctgtttttttgtttgcccttgtgcgcagaaacaaacgatgcctcgtaaaggattatccaatttcgatgattatgat  3360600              ----------->TGA1            <---------ICU4            --------->YAB1      <---------YAB1                                                 <----- XXXXXXXXXXXXXXXXXXMIR842     <---------ICU4                                                  <------ -----YAB1 --------->ICU4    --------->ICU4                                                   ------- ---->ICU4 <---------YAB1 <---------YAB1                             <---------ARR11(3)     <-------- -->YAB1 --------->YAB1<----------DOF2                            <-----------GT1 <----------DOF2 ->ICU4 --------->ICU4<---------ANAC58 --------->YAB1       ----------->GT1       <---------DAG2 --YAB1 <---------YAB1<---------ANAC58<---------YAB1    ------->TEIL --------->ARR11(3)   <----------   gatggttttgatgatgatgacgatgcttttgattatgactatgatgttgatatagatgaacatggtataaacatcttcccattacttttcttctggtggt  3360700  Previous    Next  AGI:  At5g10625.1    Description:  similar to FPF1 (FLOWERING PROMOTING FACTOR 1) [Arabidopsis thaliana] (TAIR:AT5G24860.1); similar to FPF1 protein [Sinapis alba] (GB:CAA72716.1) Range:  from: 3358788    to: 3359782    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g10630.1    Description:  elongation factor 1-alpha, putative / EF-1-alpha, putative. similar to EF-1-alpha-related GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18070.2); similar to EF-1-alpha-related GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18070.1); similar to hypothetical protein OsJ_000135 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10310.1); similar to putative translation elongation factor eEF-1 [Oryza sativa (japonica cultivar-group)] (GB:BAD52510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43145.1); contains InterPro domain Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ( Range:  from: 3360174    to: 3364597    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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