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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------->
DOF2
<------
MYB46(1)
<---------
MYB46(3)
<------
MYB83
<---------
MYB46(3)
<-----------
GT1
<---------
MYB52(1)
<---------
MYB52(1)
------
--------->
ICU4
<----------
DOF2
<-------
GAMYB
----------->
GT1
<---------
AHL20(2)
----->
ZmHOX2a(2)
<----------
DOF2
<-----------
GT1
<---------
AtMYB61
<-----------
GT1
--------
gatcgatgtaagaattgtgtttcttttggctttaaactattttccatttactccgttggtgagaaagagttatattttcgtt
atatatatgtaagtgaag
3359800
<-----------
GT1
<---------
YAB1
<--------
HAHB4
<---------
ICU4
---------->
DOF2
--------->
ATHB51
<----------
ID1
<---------
YAB1
----------->
GT1
<---------
YAB1
<----------
ID1
--------->
YAB1
<------
ZmHOX2a(2)
----------->
GT1
---------->
DOF2
<---------
ICU4
<---------
TOE2(3)
----->
GT1
---------->
DOF2
--------->
REM1(1)
--------->
ICU4
->
ZAT14
------------------------>
ANAC81
<---------------
AtSPL8
<---------
ATHB12
------->
GAMYB
tcaaatttgttaaaaaaaaaagaaaaagaaaaaaagaagtgaagtttgttttgagtacaaaactacaacttcaaacattaccattattaacgatccaaaa
3359900
----
<---
<------
NtERF2
----
--------->
LBD16
----
----------->
GT1
<----
<---------
LBD16
------
------>
ZmHOX2a(1)
<------
ZmHOX2a(2)
----------->
RAV1(2)
--------
<------
ZmHOX2a(2)
<-------
<---------
ARR14(2)
<---------
LBD16
<----------
DOF2
------>
ZmHOX2a(2)
<-----------
GT1
--------->
ARR11(3)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
LBD16
<---------
GLK1(2)
<---------
GLK1(2)
<-----------
GT1
---------->
DOF2
--------
<---------
YAB1
<------------------------
ANAC81
<---------
ANAC46
--------->
ARR11(3)
--------->
TOE2(3)
<-----------
GT1
---------->
ID1
--------->
ARR14(2)
----------->
ARR10
catatgttaattgtttataccaaaactattttccatcagattttgtctctttgatttttcggatcctggcggaaaaaaaaagagaagatttttcggatcc
3360000
--------->
CCA1(2)
--------->
ARR11(3)
<---------
ARR14(2)
----->
HSFB2a(2)
<---------
ANAC58
------
------
HSFB2a(2)
<---------
TOE2(3)
------>
MYB83
----->
LBD16
<---------
TOE1(3)
--------
-->
ZmHOX2a(1)
<---------
At5g28300
------>
MYB46(1)
-----
LBD16
--------->
AHL20(2)
---------
>
ZmHOX2a(2)
----------->
RAV1(1)
<-----------
GT1
<---------
GLK1(2)
-------
->
ARR11(3)
---------->
DOF2
<---------
YAB1
<---------
ANAC46
--------->
MYB46(3)
--
ARR14(2)
<-------
GAMYB
--------->
ICU4
<---------
ANAC58
--------->
ZAT6
->
ARR14(2)
----------->
GT1
--------->
TOE2(3)
<-----------
RAV1(1)
<-----------
GT1
tggaaatatcagatataggcccgttaaaagcccaacaatttcattagttattatttacggttttgttgtgtgttttccatattcttactctatccaaccg
3360100
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
------>
ZmHOX2a(2)
----------------->
AGL3
--------->
ARR14(2)
------->
GAMYB
--------->
TOE2(3)
<---------
LBD16
<---------
ARR14(2)
<-----------
RAV1(2)
<---------
ARR14(2)
--------->
ARR14(2)
<------
NtERF2
<------
NtERF2
--------->
ARR14(2)
<---------
ARR11(3)
<---------
DEAR3(2)
--------->
TOE1(3)
<-----
->
GAMYB
--------->
LBD16
--------->
CCA1(2)
------>
NtERF2
------>
NtERF2
-------
>
P
--------->
GLK1(2)
--------->
AGP1
<---------
DEAR3(1)
<-----------
GT1
<-------
>
MYB52(1)
<---------
ARR14(2)
--------->
ARR14(2)
----------->
HVH21
---------->
DOF2
<--------
-->
MYB46(3)
<------
ZmHOX2a(2)
<---------
CCA1(2)
--------->
ANAC46
*
TSS
<-----------
GT1
aaacccgaatccggatccaaatccagatccgaagccttcatatcgtcggcatcaacaggcgacgaattacctc
aaactcaaagctaaatttacaggcgga
3360200
<---------
At4g35610
--------->
ARR14(2)
--------->
ZAT14
<---------
ARR14(2)
--------->
WOX13(1)
-
-
NtERF2
----------->
GT1
---------->
DOF2
-->
LBD16
<---------
ANAC46
<------
ZmHOX2a(2)
<---------
At4g35610
--
ANAC46
<----------
DOF2
<---------
ZAT14
--------->
HSFB2a(2)
--------->
At4g35610
-
LBD16
<---------
TOE1(2)
<---------
ATHB12
<---------
HSFB2a(2)
<----------
DOF2
<----
gaagttggattcgaaggaacgtctttcgtaaatcaattctgctctgtaactagtttct
gtaagtgtttggatcaatattctttgttaagctcaaagttaa
3360300
<-
<---------
MYB52(1)
<---------
ANAC58
<-
<---------
At5g28300
<---------
ANAC58
<----
<-----------
GT1
--------->
ATHB12
<------
<---------
ARR11(3)
<---------
ARR11(3)
<---------
ICU4
<---------
------>
TEIL
<---------
GLK1(2)
--------->
ARR11(3)
<-----------
GT1
<----------
-----
TOE2(3)
<-----------
GT1
----------->
GT1
---------->
DOF2
<----------
DOF2
<---------
At4g35610
tgaatttggaattggattttcaatatcaccgttcgtaaaatgcttcagaaagatgtctgaattctctctttgttactcattgcttctgatcactgtcggt
3360400
<-----------
GT1
--------->
YAB1
--------->
TOE1(3)
<---------
DEAR3(2)
----------
RAV1(1)
<---------
ANAC58
--------->
TOE2(3)
--------
ANAC46
<---------
ANAC58
<---------
ARR11(3)
-----
MYB52(1)
<------
ZmHOX2a(1)
<---------
DREB2C(2)
--------->
ANAC46
---
DEAR3(2)
<---------
REM1(1)
<-----------
RAV1(1)
<---------
ANAC46
--
HVH21
--------->
ALFIN1
<---------
At4g35610
--------->
ARR11(3)
<---------
ANAC46
-
RAV1(1)
<---------
ETT(1)
<----------
DOF2
--------->
MYB59
<---------
YAB1
<-----------
RAV1(1)
tttgtgggtttaagtccgacaagtgtaggagcttttgcttctgagttatgtcggttttattatcttaactatatatgtgttgtgtttttttatacagaat
3360500
<XX
<----
-----
-------
--------
--------->
MYB52(1)
<-------
--------->
TOE1(2)
--------->
YAB1
--------->
ZAT18
<---------
ICU4
--------->
At4g35610
<---------
TOE2(3)
--------->
ICU4
--------->
ZAT18
---------->
DOF2
<---------
YAB1
<---------
ANAC58
<---------
MYB52(2)
--------->
ICU4
<---------
ANAC58
--------->
MYB46(3)
<------
ZmHOX2a(1)
--------->
YAB1
<---------
MYB52(1)
<---------
ZAT18
------>
NtERF2
<---------
YAB1
tgaaacttaacttacatacaatctctgtttttttgtttgcccttgtgcgcag
aaacaaacg
atgcctcgtaaaggattatccaatttcgatgattatgat
3360600
----------->
TGA1
<---------
ICU4
--------->
YAB1
<---------
YAB1
<-----
XXXXXXXXXXXXXXXXXX
MIR842
<---------
ICU4
<------
-----
YAB1
--------->
ICU4
--------->
ICU4
-------
---->
ICU4
<---------
YAB1
<---------
YAB1
<---------
ARR11(3)
<--------
-->
YAB1
--------->
YAB1
<----------
DOF2
<-----------
GT1
<----------
DOF2
->
ICU4
--------->
ICU4
<---------
ANAC58
--------->
YAB1
----------->
GT1
<---------
DAG2
--
YAB1
<---------
YAB1
<---------
ANAC58
<---------
YAB1
------->
TEIL
--------->
ARR11(3)
<----------
gatggttttgatgatgatgacgatgcttttgattatgactatgatgttgatatagatgaacatg
gtataaacatcttcccattacttttcttctggtggt
3360700
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AGI:
At5g10625.1
Description:
similar to FPF1 (FLOWERING PROMOTING FACTOR 1) [Arabidopsis thaliana] (TAIR:AT5G24860.1); similar to FPF1 protein [Sinapis alba] (GB:CAA72716.1)
Range:
from: 3358788
to: 3359782
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g10630.1
Description:
elongation factor 1-alpha, putative / EF-1-alpha, putative. similar to EF-1-alpha-related GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18070.2); similar to EF-1-alpha-related GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18070.1); similar to hypothetical protein OsJ_000135 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10310.1); similar to putative translation elongation factor eEF-1 [Oryza sativa (japonica cultivar-group)] (GB:BAD52510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43145.1); contains InterPro domain Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (
Range:
from: 3360174
to: 3364597
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.