Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------------->AGL15                                                                      ===============================                                                             <------MYB46(1)                        --------->ALFIN1                     <------MYB83                      <---------ANAC46                      <---------MYB46(3)         ----------->GT1<-----------RAV1(1)                 <---------AtMYB61       <---------DOF5.7(2)                                 <---------MYB52(1)                      <- -------->YAB1    --------->ARR11(3)                       <---------MYB55(1)                 <------ --------YAB1 ---------->DOF2                              <---------------------WRI1        --------   tatgatagtaaacgtgaaaagatagtgtgtggctcttatatggtatacatagagagaagcagttggtgttttctaggtagagaatgttttagtcattaaa  3219600                         --------->ARR14(2)                         <---------ARR14(2)                         <-----------ARR10                         <---------ARR11(1)                                         <---------TOE1(2)                         <---------ARR11(3)                            <---------ARR14(2)                        <---------CCA1(2)                              --------->ARR14(2)                      --------->AtMYB61                           ----------->RAV1(1)  <---------GLK1(2) ===================================================================================MADS_MADS   <---- --------YAB1       ------>NtERF2                                --------->ANAC46--------->ATHB12 ---AHL20(2)  <------------CBF                  <---------At4g35610 ================================= ->AHL20(2)<-----------HVH21                    --------->At4g35610 --------------->AGL15   ---------   tatgatatgtctgtgtcattgccaccatatctactctggtctcagtagtctgcttactctcgagtctccaccatatatgtgaatcgttggattcttcaat  3219700                --------->YAB1       <---------GLK1(1)                              <---------------AGL15                      ----       --------->GLK1(1)                              --------------->AGL15   <---------------AGL15      --------->ARR11(3)                              <----------DOF2         --------------->AGL15      <---------ARR11(3)                              ========================================MADS_MADS   <---------TOE2(3)                        --------->MYB52(2)               <-----------------AGL3  ---------->DOF2                          <-------TEIL              ------------>CBF--------->ANAC46 -----ATHB12    ----------->GT1           <---------MYB52(1)    ---------->DOF2      --------->ANAC58 =====================================================================MADS_MADS      --------->ANAC58 --->CBF  --------->ZAT6               --------------->AtSPL3<---------ZAT6  ----------------->AGL3   cgtttaaagatatcactatcgtaatttgtgaagaaactttagacgttcgttttcttctttttagagtaaaggtcaatttgctaaattaagcaactaattt  3219800                                                                      ------------>CBF                                                                    <---------ARR14(2)                                                                   --------->At5g28300                                                                   <-------GAMYB                                                                  <---------MYB46(3)                                                                  <---------DEAR3(2)                                                                  ----------->GT1                                                                 <---------DEAR3(1)                                                                 <---------ANAC46                                                                 <---------RAP2.6(2)                                                                <------NtERF2                                                               ------------>AtMYB77                                                               <------MYB46(1)                                                               <------MYB83                                                           <---------MYB46(3)                                                        <---------ANAC46               ==============                                              ----------->GT1<--------P                ---------->DOF2                                             <---------TOE2(3)<---------DEAR3(1)     ----------->TBP   ------------>CBF                       <---------WOX13(1)<-------GAMYB       --------->ANAC58   <---------ATHB12   <-----------GT1     <--------P    <---------ANAC58        --------->ANAC58 --------->WOX13(1)  <-----------GT1     <-------GAMYB  <---------ANAC58   --------->YAB1 ------->GT1     --------->ICU4         <---------MYB46(3) --------->MYB55(2)<---------REM1(1)  -----   agtaaatcaatgtaaactaatttttaacagtttttgtatttttggttgatgttaattttcgtggttggcggttacaatggtgaagccataaaaacgcgtc  3219900                       --------->LBD16                      --------->RAP2.6(2)  --------->TOE2(3)                   <---------ARR14(2)      --------->TOE1(3)            <---------At4g35610     ------>ZmHOX2a(2)            --------->At4g35610    <------ZmHOX2a(2)            =========================bZIP_DOF            <---------O2          --------->ARR11(3)            ----------->RAV1(2)   <---------AGP1            --------->ZAT2        --------->AGP1                                            <--------            <---------ZAT2        <---------ARR11(3)                                        <--------            <---------TGA1a       <---------ARR14(2)                              ----------->GT1            --------->O2          --------->ARR14(2)                              --------->LBD16          <---------ALFIN1       --------->At4g35610                             ----------->GT1        --------->AtMYB61 ---------->DOF2  <---------MYB59                      <---------LBD16 --------->TOE2(3) --------->ARR14(2)   <-----------GT1  --------->ALFIN1     --------->ARR14(2) =====================bZIP_DOF   <---------CCA1(2)   <---------At5g28300      <---------ARR14(2)----- ------->CBF--------->TGA1a  <-----------HVH21      <-----------GT1      ------>ZmHOX2a(2)  <--------   caatctcaaacctcacctgagaaaccgcaaaagtcagatctattaccttacattttacggtggaagaacatttgatctcaaatcgggaaaaatggcgagt  3220000                                                                                --------->ANAC58                                                                                --------->ANAC58                                        --------->WOX13(1)    <---------ICU4    <----------ID1                                      <------ZmHOX2a(2)       --------->YAB1    --------->ANAC46   <---------YAB1             <---------ANAC58      --------->ANAC58           --------->SPL7 -ANAC46                      <---------ANAC46      --------->ANAC58       <---------------AtSPL8 -ANAC58           --------->ANAC58  --------->ARR11(3)  --------->ANAC58  <---------------AtSPL3 ---->ALFIN1       --------->ANAC58  <---------ARR11(3)  --------->ANAC58  --------------->AtSPL8 -ANAC58   ---------->DOF2    <---------ANAC58<---------MYB52(1)          <---------ANAC46   gtgtcaccattagcaaagtacaagctcgtgttccttggagatcaatccgttggcaagaccagcatcatcactcgtttcatgtacgacaaattcgatacca  3220100                                                                             <-----------RAV1(1)                                                                             ------>ZmHOX2a(1)                                                                             ========================                                                                          <------ZmHOX2a(2)                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                         <---------ARR11(3)                                                                         --------->ARR11(3)                                                                   --------->CCA1(2)                                                                   <------ZmHOX2a(2)                                                                   =================HOX2a_HOX2a                                                                  <---------ARR11(3)                                           <---------AHL20(2)     --------->AGP1                                          --------->AHL20(1)      --------->ARR11(3)                <                                          <---------AHL20(1)      --------->ARR14(2)                <                                          --------->AHL20(2)      <---------ARR14(2)     --------->ATHB12           <------ZmHOX2a(2)              <---------AHL20(2)     --------->GLK1(1)      --------->ICU4        <------MYB46(1)                  --------->AHL20(2)  <-----------HVH21     <----------DOF2  -        <------MYB83                --------->YAB1  ================================HOX2a_HOX2a <----      <--------P                   <------ZmHOX2a(2)------>ZmHOX2a(2)  --------->ANAC46 <---------YAB1   cttatcaggttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggat  3220200            <---------HSFB2a(2)            --------->HSFB2a(2)      <---------ICU4      <---------GLK1(2)   --------->YAB1                                                                  --------->ATHB12  <-------TEIL                                                                    <---------ATHB12 ==HOX2a_HOX2a                                --------->GLK1(2)              --------->ANAC46 ---------ARR14(2)                           <---------GLK1(2)               --------->ANAC58 ---------GLK1(2)                        <------ZmHOX2a(2)                   --------->ANAC58 -------->ARR14(2)                --------->ATHB12           <---------AtMYB61    --------->MYB46(3) --ZmHOX2a(2)  <---------GLK1(2) <---------YAB1  <---------YAB1       <-----------RAV1(1)   cagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcaggcaaccattggaattgatt  3220300                                         --------------->AGL15                               <---------HSFB2a(1)         --------->AHL20(2)                    <---                        <---------ARR14(2)      ----------->GT1                   ------>ZmHOX2a(2)                        --------->ARR14(2)      --------->YAB1             <----------DOF2       <---                       <------ZmHOX2a(1)<-----------------AG           ==================HOX2a_HOX2a                     <---------TOE2(3)  <-----------------AGL1         ------>ZmHOX2a(1)        -----               ------->TEIL <------ZmHOX2a(1)  <---------TOE2(3)       <---------CCA1(2)     <-------   ttttgtcaaaaacaatgtaccttgaggataggactgttcgtctccaactatggtaattcaattcaatatgctcctatcttttgatctaaaacttttcacc  3220400                                       <------MYB46(1)                                       ----------->GT1                                       <------MYB83                                       <---------ANAC46                                      --------->MYB46(2)       --------->AHL20(1)          --------->ATHB12       <---------AHL20(1)     <---------YAB1        <---------AtLEC2      --------->AHL20(2)  --------->GLK1(2)    --------->ATHB12 ------DAG2--------->ARR11(3)<----------DOF2  <---------YAB1                                      --- -------DOF2              <---------ARR11(3)  --------->ICU4                                     ---- ---->TOE2(3)         --------->YAB1  --------->MYB59                    --------->AtLEC2  <---------ANAC58 ----GT1  <---------CCA1(2) <---------ICU4   <---------TOE2(3)         <---------AtLEC2    <---------ANAC58   tttatcaaatatatatctagatgagcataatctttattgtttggtataatgtttgaatggaacatcaaaatgtccatggaaattctcagcattgtgtatc  3220500  Previous    Next  AGI:  At5g10260.1    Description:  AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding. similar to AtRABH1d (Arabidopsis Rab GTPase homolog H1d), GTP binding [Arabidopsis thaliana] (TAIR:AT2G22290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66868.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Rab6-related (InterPro:IPR015600); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 3219992    to: 3221516    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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