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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------------->
AGL15
===============================
<------
MYB46(1)
--------->
ALFIN1
<------
MYB83
<---------
ANAC46
<---------
MYB46(3)
----------->
GT1
<-----------
RAV1(1)
<---------
AtMYB61
<---------
DOF5.7(2)
<---------
MYB52(1)
<-
-------->
YAB1
--------->
ARR11(3)
<---------
MYB55(1)
<------
--------
YAB1
---------->
DOF2
<---------------------
WRI1
--------
tatgatagtaaacgtgaaaagatagtgtgtggctcttatatggtatacatagagagaagcagttggtgttttctaggtagagaatgttttagtcattaaa
3219600
--------->
ARR14(2)
<---------
ARR14(2)
<-----------
ARR10
<---------
ARR11(1)
<---------
TOE1(2)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
CCA1(2)
--------->
ARR14(2)
--------->
AtMYB61
----------->
RAV1(1)
<---------
GLK1(2)
===================================================================================
MADS_MADS
<----
--------
YAB1
------>
NtERF2
--------->
ANAC46
--------->
ATHB12
---
AHL20(2)
<------------
CBF
<---------
At4g35610
=================================
->
AHL20(2)
<-----------
HVH21
--------->
At4g35610
--------------->
AGL15
---------
tatgatatgtctgtgtcattgccaccatatctactctggtctcagtagtctgcttactctcgagtctccaccatatatgtgaatcgttggattcttcaat
3219700
--------->
YAB1
<---------
GLK1(1)
<---------------
AGL15
----
--------->
GLK1(1)
--------------->
AGL15
<---------------
AGL15
--------->
ARR11(3)
<----------
DOF2
--------------->
AGL15
<---------
ARR11(3)
========================================
MADS_MADS
<---------
TOE2(3)
--------->
MYB52(2)
<-----------------
AGL3
---------->
DOF2
<-------
TEIL
------------>
CBF
--------->
ANAC46
-----
ATHB12
----------->
GT1
<---------
MYB52(1)
---------->
DOF2
--------->
ANAC58
=====================================================================
MADS_MADS
--------->
ANAC58
--->
CBF
--------->
ZAT6
--------------->
AtSPL3
<---------
ZAT6
----------------->
AGL3
cgtttaaagatatcactatcgtaatttgtgaagaaactttagacgttcgttttcttctttttagagtaaaggtcaatttgctaaattaagcaactaattt
3219800
------------>
CBF
<---------
ARR14(2)
--------->
At5g28300
<-------
GAMYB
<---------
MYB46(3)
<---------
DEAR3(2)
----------->
GT1
<---------
DEAR3(1)
<---------
ANAC46
<---------
RAP2.6(2)
<------
NtERF2
------------>
AtMYB77
<------
MYB46(1)
<------
MYB83
<---------
MYB46(3)
<---------
ANAC46
==============
----------->
GT1
<--------
P
---------->
DOF2
<---------
TOE2(3)
<---------
DEAR3(1)
----------->
TBP
------------>
CBF
<---------
WOX13(1)
<-------
GAMYB
--------->
ANAC58
<---------
ATHB12
<-----------
GT1
<--------
P
<---------
ANAC58
--------->
ANAC58
--------->
WOX13(1)
<-----------
GT1
<-------
GAMYB
<---------
ANAC58
--------->
YAB1
------->
GT1
--------->
ICU4
<---------
MYB46(3)
--------->
MYB55(2)
<---------
REM1(1)
-----
agtaaatcaatgtaaactaatttttaacagtttttgtatttttggttgatgttaattttcgtggttggcggttacaatggtgaagccataaaaacgcgtc
3219900
--------->
LBD16
--------->
RAP2.6(2)
--------->
TOE2(3)
<---------
ARR14(2)
--------->
TOE1(3)
<---------
At4g35610
------>
ZmHOX2a(2)
--------->
At4g35610
<------
ZmHOX2a(2)
=========================
bZIP_DOF
<---------
O2
--------->
ARR11(3)
----------->
RAV1(2)
<---------
AGP1
--------->
ZAT2
--------->
AGP1
<--------
<---------
ZAT2
<---------
ARR11(3)
<--------
<---------
TGA1a
<---------
ARR14(2)
----------->
GT1
--------->
O2
--------->
ARR14(2)
--------->
LBD16
<---------
ALFIN1
--------->
At4g35610
----------->
GT1
--------->
AtMYB61
---------->
DOF2
<---------
MYB59
<---------
LBD16
--------->
TOE2(3)
--------->
ARR14(2)
<-----------
GT1
--------->
ALFIN1
--------->
ARR14(2)
=====================
bZIP_DOF
<---------
CCA1(2)
<---------
At5g28300
<---------
ARR14(2)
-----
------->
CBF
--------->
TGA1a
<-----------
HVH21
<-----------
GT1
------>
ZmHOX2a(2)
<--------
caatctcaaacctcacctgagaaaccgcaaaagtcagatctattaccttacattttacggtggaagaacatttgatctcaaatcgggaaaa
atggcgagt
3220000
--------->
ANAC58
--------->
ANAC58
--------->
WOX13(1)
<---------
ICU4
<----------
ID1
<------
ZmHOX2a(2)
--------->
YAB1
--------->
ANAC46
<---------
YAB1
<---------
ANAC58
--------->
ANAC58
--------->
SPL7
-
ANAC46
<---------
ANAC46
--------->
ANAC58
<---------------
AtSPL8
-
ANAC58
--------->
ANAC58
--------->
ARR11(3)
--------->
ANAC58
<---------------
AtSPL3
---->
ALFIN1
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC58
--------------->
AtSPL8
-
ANAC58
---------->
DOF2
<---------
ANAC58
<---------
MYB52(1)
<---------
ANAC46
gtgtcaccattagcaaagtacaagctcgtgttccttggagatcaatccgttggcaagaccagcatcatcactcgtttcatgtacgacaaattcgatacca
3220100
<-----------
RAV1(1)
------>
ZmHOX2a(1)
========================
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
CCA1(2)
<------
ZmHOX2a(2)
=================
HOX2a_HOX2a
<---------
ARR11(3)
<---------
AHL20(2)
--------->
AGP1
--------->
AHL20(1)
--------->
ARR11(3)
<
<---------
AHL20(1)
--------->
ARR14(2)
<
--------->
AHL20(2)
<---------
ARR14(2)
--------->
ATHB12
<------
ZmHOX2a(2)
<---------
AHL20(2)
--------->
GLK1(1)
--------->
ICU4
<------
MYB46(1)
--------->
AHL20(2)
<-----------
HVH21
<----------
DOF2
-
<------
MYB83
--------->
YAB1
================================
HOX2a_HOX2a
<----
<--------
P
<------
ZmHOX2a(2)
------>
ZmHOX2a(2)
--------->
ANAC46
<---------
YAB1
cttatcag
gttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggat
3220200
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<---------
ICU4
<---------
GLK1(2)
--------->
YAB1
--------->
ATHB12
<-------
TEIL
<---------
ATHB12
==
HOX2a_HOX2a
--------->
GLK1(2)
--------->
ANAC46
---------
ARR14(2)
<---------
GLK1(2)
--------->
ANAC58
---------
GLK1(2)
<------
ZmHOX2a(2)
--------->
ANAC58
-------->
ARR14(2)
--------->
ATHB12
<---------
AtMYB61
--------->
MYB46(3)
--
ZmHOX2a(2)
<---------
GLK1(2)
<---------
YAB1
<---------
YAB1
<-----------
RAV1(1)
cagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag
gcaaccattggaattgatt
3220300
--------------->
AGL15
<---------
HSFB2a(1)
--------->
AHL20(2)
<---
<---------
ARR14(2)
----------->
GT1
------>
ZmHOX2a(2)
--------->
ARR14(2)
--------->
YAB1
<----------
DOF2
<---
<------
ZmHOX2a(1)
<-----------------
AG
==================
HOX2a_HOX2a
<---------
TOE2(3)
<-----------------
AGL1
------>
ZmHOX2a(1)
-----
------->
TEIL
<------
ZmHOX2a(1)
<---------
TOE2(3)
<---------
CCA1(2)
<-------
ttttgtcaaaaacaatgtaccttgaggataggactgttcgtctccaactatg
gtaattcaattcaatatgctcctatcttttgatctaaaacttttcacc
3220400
<------
MYB46(1)
----------->
GT1
<------
MYB83
<---------
ANAC46
--------->
MYB46(2)
--------->
AHL20(1)
--------->
ATHB12
<---------
AHL20(1)
<---------
YAB1
<---------
AtLEC2
--------->
AHL20(2)
--------->
GLK1(2)
--------->
ATHB12
------
DAG2
--------->
ARR11(3)
<----------
DOF2
<---------
YAB1
---
-------
DOF2
<---------
ARR11(3)
--------->
ICU4
----
---->
TOE2(3)
--------->
YAB1
--------->
MYB59
--------->
AtLEC2
<---------
ANAC58
----
GT1
<---------
CCA1(2)
<---------
ICU4
<---------
TOE2(3)
<---------
AtLEC2
<---------
ANAC58
tttatcaaatatatatctagatgagcataatctttattgtttggtataatgtttgaatggaacatcaaaatgtccatggaaattctcagcattgtgtatc
3220500
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AGI:
At5g10260.1
Description:
AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding. similar to AtRABH1d (Arabidopsis Rab GTPase homolog H1d), GTP binding [Arabidopsis thaliana] (TAIR:AT2G22290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66868.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Rab6-related (InterPro:IPR015600); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579)
Range:
from: 3219992
to: 3221516
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.