Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                          --------->ANAC58                                                                      --------->ARR11(3)  --------->ANAC58                                                                      <---------ARR11(3)  --------->ANAC46                                                <------MYB46(1)      --------->GLK1(1)   <-----------                 --------->HSFB2a(2)            <------MYB83         <---------GLK1(1)   ------------                 <---------HSFB2a(2)          <---------WOX13(1)--------->At4g35610     <------------                 ------>ZmHOX2a(1)  --------->YAB1              <---------At4g35610     <------------     <-----------GT1           ------->GAMYB <---------GLK1(2)<---------bZIP60(1)  <---------ICU4   agaaatttcactatcagtcctagatgacttcaacggagtcataaacagattggtctctctaatggcatcagaaatcttcagttactaatttcaagaaatg  2995300 ------>GT1 ----AGL15 --->AGL15                   <-------TEIL                                                  ---------- -----AG   --------->HSFB2a(2)   --------->ATHB12                               <---------MYB52(1) -----AGL1 <---------HSFB2a(2)  <---------YAB1     --------->YAB1           <---------ATHB12   gaaatatacacttgtagaagcgaatgtcaagttcatggttgaactataaatattcagaacgttgatgagtctagacaaatcagttttgtttgagagtgaa  2995400                                                                             ---------->DOF2                                                                          ----------->GT1                           ------->GAMYB                                 <---------TOE2(3)       ----                          --------->MYB46(3)                           ---------->DOF2           <---                         -------->P   <---------TOE2(3)             ------->GAMYB          <------ZmHOX2a(1) ->GT1                 --------->MYB46(3)        ---------->DOF2 --------->MYB52(1)  ----------->RAV1(2)   tacaaactattctggttttagtagaacaaccatcgaatttaagaatataaaaaaagataacttgagttaacagcaaaggtaaagaaaacctgaggagtga  2995500                                      --------->ANAC58                                      --------->ANAC58                                <---------At4g35610            ------>ZmHOX2a(1)   --------->At4g35610       <---------GLK1(1)        --------->GLK1(1)                                --------->At4g35610       --------->GLK1(1)    <------MYB46(1)                          ------>ZmHOX2a(1)  <---------At4g35610       <------MYB83                    ------>ZmHOX2a(1)    <---------At4g35610  --------->At4g35610     <--------P --------->LBD16  <---------ANAC58           <---------ZAT2  --------->ZAT2         ----------------------->TaNAC69(2)--------->TOE2(3)  <------ZmHOX2a(1) ----->At4g35610        <---------MYB46(3)  >>>>>>>>>>>>>>>>>LFY --------->ARR14(2) ------At4g35610     ------>ZmHOX2a(1)--------->ANAC46<---------ANAC58    <---------MYB52(1)    <----   gatgagctgaaatcctagcaatcctctggttggcatctccacgaaactccattgttgtgttcctcagtttcctctcgttaggaagctgtttaagagtttt  2995600                                                         <---------bZIP60(1)                                                         --------->bZIP60(1)                                                         <---------TGA2(1)                                                         <---------ANAC55(2)                                                         <---------ANAC58                                                         --------->ANAC55(2)                                                         <---------ANAC46                                                         --------->TGA2(1)                                                         <---------ANAC58                                                        ----------->STF1                     --------                                                       <---------TGA2(2)                 --------->YAB1                                                      ----------->TGA1                  <---------YAB1                                                    <---------ICU4                <---------YAB1                       --------->TOE2(3)           <---------YAB1              <---------RVE1(1)                       --------->TOE1(3)         <---------ICU4               --------->ARR11(3)  <--                     <---------ARR11(3)          --------->YAB1               <---------GLK1(2)   <--            --------->ANAC46                     --------->ATHB12             <---------ARR11(3)  <--            --------->ANAC58                    --------->ICU4--------->ICU4*TSS  <---------AHL20(2)            --------->ANAC58       --------->ZAT18 --------->ICU4       --------->YAB1--------->YAB1 -----AHL20(2)      <------ZmHOX2a(1)          <---------WOX13(1)      <---------YAB1<---------YAB1   aatttgtatcagacaagaaacaggaccttaaaacatggggactagattgaatgattatgacgtaagtatttgtattataagatttttattatgagaattt  2995700                                               <---------ARR11(3)                                              <---------CCA1(2)     --------->ANAC58                       <---------DAG2     --------->ANAC58                ------>ZmHOX2a(1)                       <-----------RAV1(1) ->GLK1(2)<-----------RAV1(1)       --------->TOE2(3)                       <---------MYB52(1)   <--- -------ANAC46                      <---------ANAC58                       <-------GAMYB         <--- -------ANAC58             <------ZmHOX2a(1)<----------DOF2            <---------WRKY18(1)      ----- -------ANAC58   --------->WOX13(1) <---------ANAC58                  ----------->HVH21        <-----   gtgtggaaagaaatgttgtccatcatgtaggaagccttccttatccctttatcttcaagttgtttttgtctcttgaccgttgtggctctcaaattttccg  2995800                                            <---------YAB1                                     --------->LBD16                                   <---------LBD16                                 --------->GLK1(2)                 <---------------AGL15   ----------->HVH21                                        <--     <---------AtLEC2           <---------GLK1(2)                                               <----   <-----------GT1              <---------ARR14(2)   <---------AtMYB61 --------->ZAT18          ----- ------TOE1(2)   --------------->AGL15  --------->ABI4(2)       <---------TOE2(3)            <------- ------TOE2(2)  ----------------->AGL2  --------->SPL7        ---------->DOF2---------->DOF2<-------- ---->LBD16     <-----------------AGL3 --------->ALFIN1     <----------DOF2 ---------->DOF2<---------ANAC46 ----TOE1(1)    <-----------------AGL2<---------MYB52(1)---------->ID1 <---------ZAT18    -----------   aggttttacatgaataaacctataaatggtagtagattccggtgcgacgattgtattggtcgcttaaaggaagcccactaaaggcccatactgccgttta  2995900                                         --------->LBD16           --------->YAB1                                        ------->GAMYB         <------ZmHOX2a(2)          <---------YAB1                <---------LBD16      --------->ARR14(2)       <---------YAB1                 --------->MYB52(1)     <---------ARR14(2)  ---------->DOF2            --------->AHL20(2)            --------->DEAR3(1) -------ZAT6                 <---------AHL20(2)            --------->MYB46(3)        --------->ARR11(3) -----ANAC46                <---------AHL20(2)          <---------ALFIN1             --------->ARR14(2) ------>GT1                <---------------AGL15        --------->AtMYB61            <---------ARR14(2) --MYB52(1)              --------->AHL20(2)             --------->DEAR3(1)        --------->MYB46(3) -RAP2.6(3)           --------->TOE2(3)<---------LBD16 --------->MYB46(3)       ----------->RAV1(1) ------>AGL1         ----------->GT1  -------->P     <-----------GT1        <---------ARR11(3)   gtgaaaaagattataaaacaaaaacgtttatttatttagcaaccgggaagtggtttcaccaccgatccagcataacaatatccaacaaatcttgagtttt  2996000                                                                                              -------                                      --------->GLK1(2)                                       -------                                      --------->GLK1(1)                                       <------                                     <---------ARR14(2)                                       -------                                     <---------GLK1(2)                                        -------                                     --------->ARR14(2)                                      --------                                    <---------HSFB2a(1)                                      --------                                    --------->HSFB2a(1)                                      <-------                ------->GAMYB --------->GLK1(2)                                              <-------             --------->ARR14(2)     --------->HSFC1(2)                                       --------             <---------ARR14(2)     <----------TaMYB80                                  <xxxxxxxxxxxx             --------->MYB52(1)<-------TEIL <---------ALFIN1                            <---------DAG2          <---------ANAC55(2) --------->ARR14(1)                <---------TOE2(2)       <----------DOF2          --------->ANAC55(2)--------->ARR14(2)             <---------REM1(2)     ----------->HVH21        --------->MYB52(1)   --------->ARR11(1)          <----------DOF2       --------->GLK1(2)     --------->YAB1          <---------GLK1(2)      <---------At5g28300 --------->At4g35610  <------- ------>ZmHOX2a(2)           <---------ARR14(2)    <-----------GT1      <---------At4g35610<---------   tgatccagcataacgtaaccggctacaaacagattcggagattcccacacattttacagctttacacaggtttttgctgagaatgtgacacttttaccat  2996100                                                           <---------ZAT14                                                           --------->ZAT14                                                           <---------ZAT18    <----------DOF2                                      --------->At5g28300   <---------ANAC58                                      --------->LBD16   <---------ANAC58                                     <---------ANAC46 -->YAB1                                              ------>NtERF2 -->TOE1(3)                                           --------->ABI4(1) ---------AGL15                                      ------->GAMYB -------->AGL15                                      --------->DEAR3(1)            --------->bZIP60(1) -->TOE2(3)                                          --------->DREB2C(2)           <---------bZIP60(1) --------->AGL2                                      <---------ALFIN1      --------->ARR14(2) --------->AG                  --------->ANAC58     --------->DEAR4(2)     <---------ARR14(2) ----------AGL1                --------->ANAC58     --------->DEAR3(2)   --------->LBD16 ----------AGL2            ------>NtERF2            --------->MYB46(3)  --------->HSFB2a(2) --------->AGL3          --------->MYB46(3)         <---------MYB55(2)  --------->ANAC46 xxxxxxxxsmallRNA(si3)   --------->ATERF1(1)       <---------ATERF1(1)  <---------HSFB2a(2) ----------AGL3         <---------ATERF1(1)       <---------ALFIN1     <---------LBD16 --GT1          <------ZmHOX2a(2) ---------->DOF2--------->ZAT18      ------>ZmHOX2a(1)         -----   aaatggctttcagtttcgatcaatggagccaccaagtaaagacattactagcccaccgccgtgaactctctcctccggaaccatgaagtcatagatgttt  2996200  Previous    Next  AGI:  At5g09660.1    Description:  PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase. Identical to Malate dehydrogenase, glyoxysomal precursor [Arabidopsis Thaliana] (GB:Q9ZP05); similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to Malate dehydrogenase 2, glyoxysomal precursor (GB:Q9XFW3); similar to Malate dehydrogenase 1, glyoxysomal precursor (GB:Q43743); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain NAD(P)-bi Range:  from: 2993445    to: 2995676    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09672.1    Description:  CPuORF21 (Conserved peptide upstream open reading frame 21) Range:  from: 2995911    to: 2998933    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09670.1    Description:  loricrin-related. similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G64550.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82910.1) Range:  from: 2995913    to: 2998917    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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