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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-----
--------->
ANAC58
--------->
ARR11(3)
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC46
<------
MYB46(1)
--------->
GLK1(1)
<-----------
--------->
HSFB2a(2)
<------
MYB83
<---------
GLK1(1)
------------
<---------
HSFB2a(2)
<---------
WOX13(1)
--------->
At4g35610
<------------
------>
ZmHOX2a(1)
--------->
YAB1
<---------
At4g35610
<------------
<-----------
GT1
------->
GAMYB
<---------
GLK1(2)
<---------
bZIP60(1)
<---------
ICU4
agaaatttcactatcagtcctagatgacttcaacggagtcataaacagattggtctctctaatggcatcagaaatcttcagttactaatttcaagaaatg
2995300
------>
GT1
----
AGL15
--->
AGL15
<-------
TEIL
----------
-----
AG
--------->
HSFB2a(2)
--------->
ATHB12
<---------
MYB52(1)
-----
AGL1
<---------
HSFB2a(2)
<---------
YAB1
--------->
YAB1
<---------
ATHB12
gaaatatacacttgtagaagcgaatgtcaagttcatggttgaactataaatattcagaacgttgatgagtctagacaaatcagttttgtttgagagtgaa
2995400
---------->
DOF2
----------->
GT1
------->
GAMYB
<---------
TOE2(3)
----
--------->
MYB46(3)
---------->
DOF2
<---
-------->
P
<---------
TOE2(3)
------->
GAMYB
<------
ZmHOX2a(1)
->
GT1
--------->
MYB46(3)
---------->
DOF2
--------->
MYB52(1)
----------->
RAV1(2)
tacaaactattctggttttagtagaacaaccatcgaatttaagaatataaaaaaagataacttgagttaacagcaaaggtaaagaaaac
ctgaggagtga
2995500
--------->
ANAC58
--------->
ANAC58
<---------
At4g35610
------>
ZmHOX2a(1)
--------->
At4g35610
<---------
GLK1(1)
--------->
GLK1(1)
--------->
At4g35610
--------->
GLK1(1)
<------
MYB46(1)
------>
ZmHOX2a(1)
<---------
At4g35610
<------
MYB83
------>
ZmHOX2a(1)
<---------
At4g35610
--------->
At4g35610
<--------
P
--------->
LBD16
<---------
ANAC58
<---------
ZAT2
--------->
ZAT2
----------------------->
TaNAC69(2)
--------->
TOE2(3)
<------
ZmHOX2a(1)
----->
At4g35610
<---------
MYB46(3)
>>>>>>>>>>>>>>>>>
LFY
--------->
ARR14(2)
------
At4g35610
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
ANAC58
<---------
MYB52(1)
<----
gatgagctgaaatcctagcaatcctctggttggcatctccacgaaactccat
tgttgtgttcctcagtttcctctcgttaggaagctgtttaagagtttt
2995600
<---------
bZIP60(1)
--------->
bZIP60(1)
<---------
TGA2(1)
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC46
--------->
TGA2(1)
<---------
ANAC58
----------->
STF1
--------
<---------
TGA2(2)
--------->
YAB1
----------->
TGA1
<---------
YAB1
<---------
ICU4
<---------
YAB1
--------->
TOE2(3)
<---------
YAB1
<---------
RVE1(1)
--------->
TOE1(3)
<---------
ICU4
--------->
ARR11(3)
<--
<---------
ARR11(3)
--------->
YAB1
<---------
GLK1(2)
<--
--------->
ANAC46
--------->
ATHB12
<---------
ARR11(3)
<--
--------->
ANAC58
--------->
ICU4
--------->
ICU4
*
TSS
<---------
AHL20(2)
--------->
ANAC58
--------->
ZAT18
--------->
ICU4
--------->
YAB1
--------->
YAB1
-----
AHL20(2)
<------
ZmHOX2a(1)
<---------
WOX13(1)
<---------
YAB1
<---------
YAB1
aatttgtatcagacaagaaacaggaccttaaaacatggggactagattgaatgattatgacgtaagtatttgtatt
ataagatttttattatgagaattt
2995700
<---------
ARR11(3)
<---------
CCA1(2)
--------->
ANAC58
<---------
DAG2
--------->
ANAC58
------>
ZmHOX2a(1)
<-----------
RAV1(1)
->
GLK1(2)
<-----------
RAV1(1)
--------->
TOE2(3)
<---------
MYB52(1)
<---
-------
ANAC46
<---------
ANAC58
<-------
GAMYB
<---
-------
ANAC58
<------
ZmHOX2a(1)
<----------
DOF2
<---------
WRKY18(1)
-----
-------
ANAC58
--------->
WOX13(1)
<---------
ANAC58
----------->
HVH21
<-----
gtgtggaaagaaatgttgtccatcatgtaggaagccttccttatccctttatcttcaagttgtttttgtctcttgaccgttgtggctctcaaattttccg
2995800
<---------
YAB1
--------->
LBD16
<---------
LBD16
--------->
GLK1(2)
<---------------
AGL15
----------->
HVH21
<--
<---------
AtLEC2
<---------
GLK1(2)
<----
<-----------
GT1
<---------
ARR14(2)
<---------
AtMYB61
--------->
ZAT18
-----
------
TOE1(2)
--------------->
AGL15
--------->
ABI4(2)
<---------
TOE2(3)
<-------
------
TOE2(2)
----------------->
AGL2
--------->
SPL7
---------->
DOF2
---------->
DOF2
<--------
---->
LBD16
<-----------------
AGL3
--------->
ALFIN1
<----------
DOF2
---------->
DOF2
<---------
ANAC46
----
TOE1(1)
<-----------------
AGL2
<---------
MYB52(1)
---------->
ID1
<---------
ZAT18
-----------
aggttttacatgaataaacctataaatggtagtagattccggtgcgacgattgtattggtcgcttaaaggaagcccactaaaggcccatactgccgttta
2995900
--------->
LBD16
--------->
YAB1
------->
GAMYB
<------
ZmHOX2a(2)
<---------
YAB1
<---------
LBD16
--------->
ARR14(2)
<---------
YAB1
--------->
MYB52(1)
<---------
ARR14(2)
---------->
DOF2
--------->
AHL20(2)
--------->
DEAR3(1)
-------
ZAT6
<---------
AHL20(2)
--------->
MYB46(3)
--------->
ARR11(3)
-----
ANAC46
<---------
AHL20(2)
<---------
ALFIN1
--------->
ARR14(2)
------>
GT1
<---------------
AGL15
--------->
AtMYB61
<---------
ARR14(2)
--
MYB52(1)
--------->
AHL20(2)
--------->
DEAR3(1)
--------->
MYB46(3)
-
RAP2.6(3)
--------->
TOE2(3)
<---------
LBD16
--------->
MYB46(3)
----------->
RAV1(1)
------>
AGL1
----------->
GT1
-------->
P
<-----------
GT1
<---------
ARR11(3)
gtgaaaaaga
tt
ataaaacaaaaacgtttatttatttagcaaccgggaagtggtttcaccaccgatccagcataacaatatccaacaaatcttgagtttt
2996000
-------
--------->
GLK1(2)
-------
--------->
GLK1(1)
<------
<---------
ARR14(2)
-------
<---------
GLK1(2)
-------
--------->
ARR14(2)
--------
<---------
HSFB2a(1)
--------
--------->
HSFB2a(1)
<-------
------->
GAMYB
--------->
GLK1(2)
<-------
--------->
ARR14(2)
--------->
HSFC1(2)
--------
<---------
ARR14(2)
<----------
TaMYB80
<xxxxxxxxxxxx
--------->
MYB52(1)
<-------
TEIL
<---------
ALFIN1
<---------
DAG2
<---------
ANAC55(2)
--------->
ARR14(1)
<---------
TOE2(2)
<----------
DOF2
--------->
ANAC55(2)
--------->
ARR14(2)
<---------
REM1(2)
----------->
HVH21
--------->
MYB52(1)
--------->
ARR11(1)
<----------
DOF2
--------->
GLK1(2)
--------->
YAB1
<---------
GLK1(2)
<---------
At5g28300
--------->
At4g35610
<-------
------>
ZmHOX2a(2)
<---------
ARR14(2)
<-----------
GT1
<---------
At4g35610
<---------
tgatccagcataacgtaaccggctacaaacagattcggagattcccacacattttacagctttacacaggtttttgctgagaatgtgacacttttaccat
2996100
<---------
ZAT14
--------->
ZAT14
<---------
ZAT18
<----------
DOF2
--------->
At5g28300
<---------
ANAC58
--------->
LBD16
<---------
ANAC58
<---------
ANAC46
-->
YAB1
------>
NtERF2
-->
TOE1(3)
--------->
ABI4(1)
---------
AGL15
------->
GAMYB
-------->
AGL15
--------->
DEAR3(1)
--------->
bZIP60(1)
-->
TOE2(3)
--------->
DREB2C(2)
<---------
bZIP60(1)
--------->
AGL2
<---------
ALFIN1
--------->
ARR14(2)
--------->
AG
--------->
ANAC58
--------->
DEAR4(2)
<---------
ARR14(2)
----------
AGL1
--------->
ANAC58
--------->
DEAR3(2)
--------->
LBD16
----------
AGL2
------>
NtERF2
--------->
MYB46(3)
--------->
HSFB2a(2)
--------->
AGL3
--------->
MYB46(3)
<---------
MYB55(2)
--------->
ANAC46
xxxxxxxx
smallRNA(si3)
--------->
ATERF1(1)
<---------
ATERF1(1)
<---------
HSFB2a(2)
----------
AGL3
<---------
ATERF1(1)
<---------
ALFIN1
<---------
LBD16
--
GT1
<------
ZmHOX2a(2)
---------->
DOF2
--------->
ZAT18
------>
ZmHOX2a(1)
-----
aaatggctt
tcagtttcgatcaatggagccaccaagtaaagacattactagcccaccgccgtgaactctctcctccggaaccatgaagtcatagatgttt
2996200
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AGI:
At5g09660.1
Description:
PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2); malate dehydrogenase. Identical to Malate dehydrogenase, glyoxysomal precursor [Arabidopsis Thaliana] (GB:Q9ZP05); similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to Malate dehydrogenase 2, glyoxysomal precursor (GB:Q9XFW3); similar to Malate dehydrogenase 1, glyoxysomal precursor (GB:Q43743); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain NAD(P)-bi
Range:
from: 2993445
to: 2995676
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g09672.1
Description:
CPuORF21 (Conserved peptide upstream open reading frame 21)
Range:
from: 2995911
to: 2998933
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g09670.1
Description:
loricrin-related. similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G64550.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82910.1)
Range:
from: 2995913
to: 2998917
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.