Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<----
<----
<-----
--------->
ANAC58
--------->
ANAC46
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
LBD16
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
At4g35610
<---------
ANAC58
--------->
LBD16
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ANAC58
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ANAC46
------->
PIF5
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ALFIN1
<-------
PIF5
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<-------
TEIL
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
LBD16
<xxxxxxxxxxxxxxxx
smallRNA(s)
<----------
DOF2
--------->
ANAC58
<---------
RVE1(1)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ZAT18
--------->
REM1(1)
<---------
At4g35610
--------->
ALFIN1
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
-------->
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
--------->
ZAT18
<---------
ALFIN1
---->
AHL20(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(se3)
--->
AHL20(2)
<---------
AHL20(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
*
TSS
aaaaagacaactgatattttaaaaaa
tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc
t
2587900
<-------
GAMYB
=====================
MYC_MYB
<---------
MYB46(3)
--------->
DEAR3(1)
--------->
LBD16
------>
NtERF2
<---------
ARR11(3)
--------->
KAN4(2)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ANAC46
--------->
ARR14(2)
<---------
REM1(2)
<----------
TaMYB80
<---------
ALFIN1
--------->
KAN4(1)
<-------
TEIL
--------->
GLK1(1)
--------->
SPL7
<---------
KAN4(1)
<-----------
HVH21
<---------
GLK1(1)
<---------
TGA1a
--------->
AHL20(2)
----------->
ARR10
--------->
TGA1a
----------->
TBP
<-----------
ARR10
<---------
O2
--------->
ANAC58
------------>
CBF
---------->
TaMYB80
--------->
O2
<---------
ALFIN1
----------->
HVH21
--------->
LBD16
--------->
ANAC46
<---------
AHL20(2)
<---------
GLK1(1)
--------->
MYB52(1)
<---------
MYB52(1)
<---------
ZAT18
-----
DAG2
--------->
WOX13(1)
<-----------
GT1
--------->
MYB46(3)
--------->
ARR14(2)
------
DOF2
<-----------
HVH21
--------->
AHL20(2)
--------->
ANAC46
<---------
ARR14(2)
----
DAG2
--------->
ANAC46
--------->
TOE2(3)
<---------
KAN4(2)
<---------
LBD16
--------->
ANAC58
<-
ttttgttgatatcagtcactgacaattcattcttaaataaactatccgagaatatccgccgttgcatcacacgggtccgtccacacgcatataaatgtct
2588000
<-------
MYC3
------->
MYC3
========================
------->
MYC3
<---------
TGA1a
<-------
MYC3
========================
<------
NtERF2
--------->
O2
------>
NtERF2
--------->
TGA1a
<-----------
TGA1
<---------
O2
<-----------
HVH21
<---------
ANAC55(2)
<---------
ANAC46
<---------
ZAT18
--------->
ARR11(3)
------>
ZmHOX2a(1)
<---------
ZAT14
<---------
ARR11(3)
<---------
MYB52(1)
--------->
ZAT14
--------->
YAB1
<---------
At4g35610
--------->
ARR14(2)
<---------
YAB1
--------->
CCA1(2)
--------->
At4g35610
<---------
ARR14(2)
--------->
ICU4
--------->
ANAC46
--------->
LBD16
--------------------->
WRI1
<-------
MYC3
--------->
ANAC55(2)
<-
---------
TaMYB80
--------->
TOE2(3)
--------->
ZAT18
------->
MYC3
------>
ZmHOX2a(1)
<--
gatattccgaaatcgactgctcacattccttaggtgtatcggcgtcagtgcacatgagtcgcacatgatgatattcctcacgtgatatgaaatgacttaa
2588100
------>
NtERF2
<------
NtERF2
--------->
LBD16
--------->
RAP2.6(2)
<---------
DEAR3(1)
<---------
SPL7
--------->
ANAC46
--------->
KAN4(2)
<---------
ATERF1(2)
<----------
DOF2
--------->
MYB52(1)
<---------
ANAC58
<---------
AHL20(1)
<---------
ANAC58
<
<---------
ARR11(3)
<---------
RAP2.6(2)
-
--------->
AHL20(2)
<---------
DEAR3(1)
<---------
ANAC58
<---------
AHL20(2)
<------
ZmHOX2a(1)
<---------
ANAC58
<----------
DOF2
<-----------
GT1
--------->
ANAC58
--------->
HSFB2a(1)
<
<----------
DOF2
------>
ZmHOX2a(1)
---------->
DOF2
--------->
ANAC58
<---------
HSFB2a(1)
<
<---------
DAG2
--------------->
AGL15
--------->
At4g35610
--------->
HSFC1(2)
-
=============
bZIP_DOF
--------->
ARR11(3)
<XXXXXXXXXXXXXXXXXXXX
MIR169H-N
<---------
HSFC1(2)
<
=============
bZIP_DOF
--------->
AHL20(1)
---------->
DOF2
<XXXXXXXXXXXXXXXXXXXX
MIR169G*
-------
----------
GT1
---------->
ID1
--------->
ATERF1(2)
<---------
At4g35610
--------->
ETT(1)
<--------
---------
GT1
<-----------
GT1
--------->
MYB46(3)
<----------
DOF2
--------->
RAP2.6(3)
<---------
ANAC46
ttacccttttcttttttttcctaatatattaccggccgcgaaaggaaagttgtctttagctggacaaggacggcttgtcggaaaattccttgttttacac
2588200
--------->
MYB52(1)
------>
MYB83
<---------
MYB59
------>
MYB83
------>
MYB46(1)
--------->
MYB52(1)
<------
MYB46(1)
---------
MYB111(1)
--------->
CCA1(2)
<------
MYB83
-------->
MYB46(3)
--------->
ARR11(1)
<------
MYB46(1)
------>
ZmHOX2a(2)
---------
MYB59
--------->
ARR11(3)
--------->
MYB59
<------
ZmHOX2a(2)
---------
MYB46(2)
<---------
ARR14(2)
<---------
MYB52(1)
<---------
ARR14(2)
-------->
AtMYB61
<---------
ARR11(3)
<---------
GLK1(2)
--------->
ARR14(2)
---------
MYB111(2)
--------->
ARR14(1)
<---------
MYB46(3)
<---------
MYB52(1)
<-----------
GT1
-->
ZAT6
--------->
ARR14(2)
<-----------
RAV1(1)
<<<<<<<<<
MYB98
---------->
DOF2
---
GT1
------>
MYB46(1)
<------
MYB83
<-----------
GT1
<-------
GAMYB
------------>
CBF
<-----
taccaaaccgaaccgttcaagatttggtttcggtttacaggtattaactgttgttcgattctcggttaagttaggttttcgaacaataaaccgatcggtt
2588300
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
=================
HOX2a_HOX2a
<-------
TEIL
==================
HOX2a_HOX2a
<---------
ANAC58
<-----------
GT1
<---------
ANAC46
--------->
ARR14(2)
<---------
ANAC58
<---------
MYB52(1)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
ICU4
--------->
AGP1
------>
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ATHB12
=================================
HOX2a_HOX2a
<---------
WOX13(1)
==================================
HOX2a_HOX2a
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ICU4
<---------
GLK1(2)
--------->
AHL20(2)
------------>
CBF
*
TSS
<---------
YAB1
--------->
ARR14(2)
----
----
MYB52(1)
<------------
CBF
<<<<<<<<<
TBF1
--------->
YAB1
----------->
RAV1(1)
----------
tggacattaaaatccctagattgattactcaatttcttcttc
tctcctctcattattttgcttgagccacagatccgtttctcctctcgatttgtcttct
2588400
<------
NtERF2
------>
NtERF2
<---------
ANAC46
------>
NtERF2
--------->
LBD16
<---------
ARR11(3)
--------->
ARR11(3)
<-----------
HVH21
<---------
LBD16
<<<<<<<<<
TBF1
<---------
TOE1(2)
<---------
RAP2.6(2)
--------->
ZAT18
<---------
ANAC58
<----------
DOF2
<---------
ZAT18
------
----->
ZAT14
<---------
ANAC58
<------
ZmHOX2a(2)
--------->
ZAT14
<-------
>
ID1
<---------
GLK1(2)
---------->
DOF2
<---------
LBD16
<---------
ZAT14
<---------
ANAC46
tcactcagtttctcgcttgttctgtcaaagatcgaaactttccggcgtctattgtcttcgcactattgcactcgtcttcttcttcgttcttggtgtgaac
2588500
--------->
At4g35610
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
TOE1(3)
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
ARR14(2)
--------->
REM1(2)
<---------
REM1(2)
<---------
ANAC46
->
TEIL
<-----------
GT1
--------->
ARR14(2)
<---------
At4g35610
--
ZAT14
<----------
DOF2
--------->
ARR11(3)
<----------
DOF2
<---------
TOE2(3)
cgaaactaaattctatctttttgctctacacg
atgaacgatcttctgaag
gtgagagttatttcttctttagctccttgtagaatattagggttttgttg
2588600
--------->
WRKY38(1)
----------------->
AGL1
<<<<<<<<<
MYB2
<-------
GAMYB
<---------
GLK1(1)
<---------
ARR11(3)
<---------
ANAC46
--------->
GLK1(1)
--------->
ARR11(3)
<---------
ANAC58
<---------
YAB1
XXXXXXXXXXXXXXXXXXXX>
MIR407
<--
<---------
ANAC58
<---------
At4g35610
<----------
DOF2
<----------
DOF2
<--
agtttgaattgcgttgatcatctaatgtggatgctgatttccaaaattgagactttttttttaaaacatcttcttttggttttcgtcttacattactgat
2588700
--------->
AtMYB61
--------->
MYB46(3)
--------->
ORA47(1)
------>
NtERF2
--------->
DEAR3(1)
<---------
YAB1
------>
ZmHOX2a(2)
--------->
YAB1
<---------
ARR11(3)
<---------
ICU4
<---------
AGP1
-------
--------->
ICU4
<---------
ALFIN1
<---------
ARR14(2)
<------
<---------
ATHB12
--------->
ATHB12
<<<<<<<<<
GATA-1
<------
--------->
WOX13(1)
<-----------
GT1
--------->
ARR11(3)
<---------
MYB46(3)
-------
AHL20(2)
<---------
ETT(1)
--------->
ZAT6
--------->
ARR14(2)
<---------
ATHB12
-------
YAB1
------->
TEIL
--------->
YAB1
<---------
CCA1(2)
--------->
WOX13(1)
ataattcaatcatgaatgccgaccactgttgataatactatctgtttattggatcttacatttatctataagggtttattatgtcaatcgattgttgtgt
2588800
Previous
Next
AGI:
At5g08075.1
Description:
pre-tRNA. tRNA-Ala (anticodon: CGC)
Range:
from: 2587827
to: 2587899
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g08080.1
Description:
SYP132 (syntaxin 132); SNAP receptor. Identical to Syntaxin-132 (SYP132) [Arabidopsis Thaliana] (GB:Q8VZU2;GB:Q9LEZ8); similar to SYP131 (syntaxin 131), SNAP receptor [Arabidopsis thaliana] (TAIR:AT3G03800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39860.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989)
Range:
from: 2588343
to: 2591317
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version