Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                                <----                                                                                               <-----                                                                                           --------->ANAC46                                                                                           --------->ANAC58                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(se3)                                                                                    <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <xxxxxxxxxxxxxxxsmallRNA(se3)                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                              <xxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                              <xxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              <xxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <xxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(fl3)                                <---------ANAC46                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                --------->LBD16    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->At4g35610                               <---------ANAC46------->PIF5                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <---------ANAC58--------->LBD16             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               --------->ALFIN1<xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <---------ANAC58<-------PIF5                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <-------TEIL <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <---------LBD16<xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------RVE1(1) --------->ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(s)<----------DOF2   --------->ANAC58      <---------At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->ZAT18   --------->REM1(1) -------->DOF2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <---------ZAT18   <---------ALFIN1 ---->AHL20(2)           <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(se3) --->AHL20(2)  <---------AHL20(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(s)*TSS   aaaaagacaactgatattttaaaaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccct  2587900                                                         <-------GAMYB                                                         =====================MYC_MYB                                                        <---------MYB46(3)                                                        --------->DEAR3(1)                                                      ------>NtERF2                                                      --------->LBD16                                                  --------->ARR11(3)                                                  --------->KAN4(2)                                                  <---------ARR11(3)                                                  <---------ARR14(2)              --------->ANAC46                                                  --------->ARR14(2)           <---------REM1(2)                                                 --------->KAN4(1)            <---------ALFIN1                                                 <----------TaMYB80      --------->SPL7                                                 <---------GLK1(1)       <-------TEIL                                                 <---------KAN4(1)     --------->ARR14(2)                                                 --------->GLK1(1)  <---------TGA1a                                                ---------->TaMYB80  --------->TGA1a     --------->AHL20(2)                                                <-----------ARR10   --------->O2  --------->ANAC58                  ------------>CBF              <---------KAN4(2)   <---------O2<---------ALFIN1                ----------->HVH21           --------->LBD16         --------->ANAC46    ----------->TBP      <---------GLK1(1)                 --------->MYB52(1)<---------MYB52(1) <---------ZAT18 -----DAG2--------->ANAC46          <-----------GT1 --------->MYB46(3) <-----------HVH21<---------AHL20(2) ------DOF2<-----------HVH21       --------->AHL20(2)--------->ANAC46  <---------ARR14(2) ----DAG2 --------->WOX13(1)--------->TOE2(3)   ----------->ARR10  <---------LBD16--------->ANAC58 <-   ttttgttgatatcagtcactgacaattcattcttaaataaactatccgagaatatccgccgttgcatcacacgggtccgtccacacgcatataaatgtct  2588000                                                                              ------->MYC3                                                                              <-------MYC3                                                                             ========================                                                  <-------MYC3               <---------TGA1a                                                  ------->MYC3               ========================                                         <------NtERF2                       --------->O2                                        ------>NtERF2                        --------->TGA1a                                        <-----------TGA1                     <---------O2                                        <-----------HVH21                    --------->ANAC46                             <---------ANAC46 <---------ZAT14      --------->ARR11(3)                          <---------MYB52(1)  <---------ZAT18      <---------ARR11(3)                          ------>ZmHOX2a(1)   --------->ZAT18     --------->YAB1               <---------At4g35610--------->ARR14(2)             <---------YAB1   --------->CCA1(2)               --------->At4g35610<---------ARR14(2)          --------->ICU4 <---------ANAC55(2)     --------->LBD16     --------------------->WRI1          ------->MYC3    --------->ANAC55(2)   <- ---------TaMYB80        --------->TOE2(3)    --------->ZAT14<-------MYC3 ------>ZmHOX2a(1)       <--   gatattccgaaatcgactgctcacattccttaggtgtatcggcgtcagtgcacatgagtcgcacatgatgatattcctcacgtgatatgaaatgacttaa  2588100                                  ------>NtERF2                                  <------NtERF2                                  --------->LBD16                                 --------->RAP2.6(2)                                <---------DEAR3(1)                              --------->ANAC46                              <---------SPL7                                     --------->KAN4(2)                             --------->ATERF1(2)                       <----------DOF2                           --------->MYB52(1)                         <---------ANAC58                      <---------AHL20(1)                              <---------ANAC58              <                      --------->ARR11(3)                           <---------DEAR3(1)<---------ANAC58                      --------->AHL20(1)                           <---------RAP2.6(2)              -                      <---------ARR11(3)                         <------ZmHOX2a(1)   <---------ANAC46        <----------DOF2   <-----------GT1                      --------->ANAC58 --------->HSFC1(2)  <   <----------DOF2------>ZmHOX2a(1)  ---------->DOF2           --------->ANAC58 <---------HSFC1(2)  <  <---------DAG2 --------------->AGL15                 --------->At4g35610      <---------HSFB2a(1) - =============bZIP_DOF<---------AHL20(2)   <XXXXXXXXXXXXXXXXXXXXMIR169H-N       --------->HSFB2a(1) < =============bZIP_DOF--------->AHL20(2)  ---------->DOF2     <XXXXXXXXXXXXXXXXXXXXMIR169G*   ------- ----------GT1 ---------->ID1<---------ATERF1(2)       <---------At4g35610 --------->ETT(1) <-------- ---------GT1 <-----------GT1--------->MYB46(3)    <----------DOF2--------->RAP2.6(3)<---------ANAC58   ttacccttttcttttttttcctaatatattaccggccgcgaaaggaaagttgtctttagctggacaaggacggcttgtcggaaaattccttgttttacac  2588200       --------->MYB52(1)       ------>MYB46(1)     <---------MYB59  ------>MYB83  ------>MYB46(1)  --------->MYB52(1)  <------MYB46(1) ---------MYB111(1)   <------MYB83                                    <------MYB83 -------->MYB46(3)--------->ARR11(1)                                  <------MYB46(1)       ------>ZmHOX2a(2) ---------MYB59   <---------ARR14(2)                                 --------->MYB59       <------ZmHOX2a(2) ---------MYB111(2)--------->ARR14(1)                         <---------MYB52(1)          --------->ARR14(2) -------->AtMYB61 <---------ARR11(3)                  <---------GLK1(2)                   <---------ARR14(2) ---------MYB46(2)--------->ARR11(3)            <---------MYB46(3) <<<<<<<<<MYB98   ---------->DOF2 -->ZAT6          --------->ARR14(2)         <-----------RAV1(1)   <---------MYB52(1)<-----------GT1 ---GT1------>MYB83--------->CCA1(2)      <-----------GT1    <-------GAMYB     ------------>CBF<-----   taccaaaccgaaccgttcaagatttggtttcggtttacaggtattaactgttgttcgattctcggttaagttaggttttcgaacaataaaccgatcggtt  2588300                                                                                 ------>ZmHOX2a(1)                                                                       =================HOX2a_HOX2a                                                                       ------>ZmHOX2a(2)                                                                       <-------TEIL                                                                      ==================HOX2a_HOX2a                                                         <---------ANAC58    <-----------GT1                                                         <---------ANAC46  --------->ARR14(2)                                                         <---------ANAC58 <---------MYB52(1)                                                       <---------YAB1 <------ZmHOX2a(2)                                                  <---------ICU4     <---------ARR14(2)                                            ------>ZmHOX2a(1)        --------->ARR14(2)                   --------->ATHB12         =================================HOX2a_HOX2a                 <---------WOX13(1)         ==================================HOX2a_HOX2a     --------->AHL20(2)       <---------ARR11(3) --------->ICU4      --------->AGP1     <---------AHL20(2)  ------------>CBF  *TSS  <---------YAB1      <---------GLK1(2)           ---- ----MYB52(1)   <------------CBF  <<<<<<<<<TBF1--------->YAB1   ----------->RAV1(1)        ----------   tggacattaaaatccctagattgattactcaatttcttcttctctcctctcattattttgcttgagccacagatccgtttctcctctcgatttgtcttct  2588400                                            <------NtERF2                                           ------>NtERF2                                          <---------ANAC46                                        ------>NtERF2                                        --------->LBD16                           --------->ARR11(3)                           <---------ARR11(3)                    <-----------HVH21  <---------RAP2.6(2)                   <<<<<<<<<TBF1             <---------TOE1(2)         <---------LBD16          --------->ZAT14            <---------ANAC58       <----------DOF2              --------->ZAT18                ------ ----->ZAT14<---------ANAC58<------ZmHOX2a(2)                   <---------ZAT18              <------- >ID1<---------GLK1(2) ---------->DOF2<---------LBD16           <---------ZAT14           <---------ANAC46   tcactcagtttctcgcttgttctgtcaaagatcgaaactttccggcgtctattgtcttcgcactattgcactcgtcttcttcttcgttcttggtgtgaac  2588500                                        --------->At4g35610                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                <---------TOE2(3)                                    --------->ARR14(2)                      --------->HSFB2a(2)                                    <---------ARR11(3)                     --------->REM1(2)                        <---------REM1(2)                               <---------ANAC46 ->TEIL           <-----------GT1   --------->ARR11(3)              <---------At4g35610 --ZAT14      <----------DOF2       <---------ARR14(2)          <----------DOF2       <---------TOE1(3)   cgaaactaaattctatctttttgctctacacgatgaacgatcttctgaaggtgagagttatttcttctttagctccttgtagaatattagggttttgttg  2588600           --------->WRKY38(1)       ----------------->AGL1                 <<<<<<<<<MYB2         <-------GAMYB            <---------GLK1(1)             <---------ARR11(3)        <---------ANAC58          --------->GLK1(1)             --------->ARR11(3)        <---------ANAC58       <---------YAB1               XXXXXXXXXXXXXXXXXXXX>MIR407           <--        <---------ANAC46     <---------At4g35610  <----------DOF2     <----------DOF2             <--   agtttgaattgcgttgatcatctaatgtggatgctgatttccaaaattgagactttttttttaaaacatcttcttttggttttcgtcttacattactgat  2588700                    --------->AtMYB61                   --------->MYB46(3)                 --------->ORA47(1)                 ------>NtERF2                <---------ETT(1)         <---------YAB1                            ------>ZmHOX2a(2)       <---------ICU4                            <---------ARR11(3)       --------->YAB1                            <---------AGP1                               -------      <---------ATHB12          --------->ZAT6   <---------ARR14(2)                           <------      --------->ICU4<---------ALFIN1             --------->ARR11(3)                           <------    --------->WOX13(1)          <-----------GT1  --------->ARR14(2)                      <---------MYB46(3) -------AHL20(2)--------->DEAR3(1)         --------->ATHB12  <<<<<<<<<GATA-1        <---------ATHB12 -------YAB1------->TEIL      --------->YAB1    <---------CCA1(2)                 --------->WOX13(1)   ataattcaatcatgaatgccgaccactgttgataatactatctgtttattggatcttacatttatctataagggtttattatgtcaatcgattgttgtgt  2588800  Previous    Next  AGI:  At5g08075.1    Description:  pre-tRNA. tRNA-Ala (anticodon: CGC) Range:  from: 2587827    to: 2587899    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08080.1    Description:  SYP132 (syntaxin 132); SNAP receptor. Identical to Syntaxin-132 (SYP132) [Arabidopsis Thaliana] (GB:Q8VZU2;GB:Q9LEZ8); similar to SYP131 (syntaxin 131), SNAP receptor [Arabidopsis thaliana] (TAIR:AT3G03800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39860.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 2588343    to: 2591317    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.