Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ANAC58         <------------------------ANAC81                      --------->ANAC58             <------MYB46(1) ---------GT1                                          <---------MYB46(3)                  <------MYB83 ----ANAC55(2)       <-----------------AGL1         <-------GAMYB                         --------->MYB111(1) --->ANAC55(2)  <----------DOF2                    <---------ANAC46                      <--------P ----GT1---------->ID1                             <---------ANAC58                <---------ZAT14 ->AHL20(2)  <-----------GT1                       <---------ANAC58           <<<<<<<<<MYB98   taaccaatttgtttttttctttgtcaaattttgggaatttgtttcagagagttgcgttgggagcaaggaagaacaggtatgttactgaagagtaggtgtc  1437200                                              --------->AHL20(2)                                 <---                     <---------ANAC58    --------->At5g28300                         --------->ANAC58                     <---------ANAC58   ----------->GT1                              --------->ANAC58          <---------YAB1      <---------MYB52(1)     --------->TOE2(3)               --------->AtLEC2        --------->YAB1<----------DOF2   --------->YAB1                               --------->ANAC46   aaactaagtattagaattgtattgctttctcagtttgttcaatggtaaataaaaacctctacattttgttcatgacaactccaaaacatgcaatctattg  1437300                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              -------                                                            --------->ATHB12                  <------                                                  <---------WOX13(1)                        ---------                                                -------->HAHB4                             <---------YAB1                                                <--------ATHB1                           --------->TOE2(3)                                                --------->ATHB12                         --------->TOE1(3)                                                <---------ICU4                           --------->YAB1                                               --------->ICU4                           <---------ATHB12                                               <---------ATHB12                         --------->MYB46(3)                                               <---------YAB1     ---------->DOF2      -------->P                                              <---------TOE2(3) <---------AHL20(2)     ------>MYB46(1)                                   --------->GLK1(1)       --------->ICU4              ------>MYB83 --------GT1 <---------At4g35610   <---------GLK1(1)       <---------YAB1         <-----------GT1 <--   tacaatttggatttaagctcatttgcaaaaatgtgagatttctcagttaatgattgaagtgatgatttaaaagtcagttttttttttccaaccataataa  1437400 --->AHL20(2) ----AHL20(2) ---ATHB1                                                <---------AtMYB61         --------->At4g35610 --->ATHB51                                          <---------ANAC58          --------->ANAC58 ----ICU4                   --------->ARR14(2)       <---------ANAC58          --------->ANAC46 -->ICU4                    <---------GLK1(2)<------ZmHOX2a(2)                 --------->ANAC58 ---YAB1                    <---------ARR14(2)------>ZmHOX2a(2)            <-----------GT1 >YAB1  --------------->AGL15               <---------ARR14(2)           --------->AHL20(2)<--------- -------AHL20(2)  --------->GLK1(2)         --------->ARR14(2)     <-----------GT1----------->RAV1(1)   tttataggcactattttgagaatcagaccagatttgtcgagactgggatccaaatgcctgtggtctagtttacaatttaacaagcagcaaaaatgtcatt  1437500                                        --------->LBD16              ----------->GT1          ------->GAMYB             ----------->GT1  --------->DEAR3(1)                             ------------>CBF       --------->YAB1         ------->GAMYB                              <---------TOE2(3)      <---------ATHB12       --------->MYB46(3)                        --------->MYB52(1)     ------>MYB83          <---------ARR14(2)                <---------AHL20(2)     ------>MYB46(1)       --------->ARR14(2)                --------->AHL20(2)     ----------->GT1    --------->WOX13(1)   ----------->ARR10               ----------->GT1<---------At5g28300 --HVH21     --------->LBD16 --------->DEAR3(2)     ---------->DOF2    <-----------GT1   ccaaaccaatcaaaccgggtaaaaccgaagaaccgcctcaaccggacttgatatcaaagcgattaaaatcaaattacggttcaatttagtaaaatcgact  1437600                                                                                                    <                                                                                                  ---                                                                                               <-----                                                                                             <-------                <----------DOF2                                                        ----------->HVH21          --------->ANAC58                                                             <---------SPL7          --------->ANAC58                                                            ------>ZmHOX2a(2)         --------->ZAT18                                                             <------ZmHOX2a(2)         <---------ZAT18          ---------->ID1               <----------ID1       --------->ARR11(3)      --------->MYB52(2)          <---------CCA1(2)     <---------HSFB2a(2)         <---------ARR11(3)    <--------P *TSS        <----------DOF2       <---------ANAC46                   --------->ARR14(2)    <---------MYB52(1)    <---------ANAC58       <---------ANAC58               ---------->DOF2<-----   <-----------HVH21      <---------ANAC58       <---------ANAC58          <------NtERF2 --------->SPL7   <---------MYB52(1) <----------DOF2         <-----------RAV1(1) ---------->DOF2   <---------ARR14(2)   aaaccggttagttcgcaactttctctttgcttcttcgtctctctctctctgtcgtgtttgagaagacgaaaagagtcggagagaaagatcggacgatgag  1437700                                                                              <---------ANAC46                                                                              <---------ANAC58                                                                            <-----------HVH21                                                                           --------->ALFIN1                                                                           ----------->HVH21                                                                         --------->LBD16                                                                       <---------LBD16                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                    --------->ATERF1(1)                                                                    <-------GAMYB                                                                   <---------ATERF1(1)          <---------HSFB2a(2)                                      --------->ABI4(2)          --------->HSFC1(1)                                       <---------DEAR3(2)          <---------HSFC1(1)                                       <---------MYB46(3)      <---------GLK1(1)                                           <---------DEAR3(1)      --------->GLK1(1)                                          <------NtERF2--------->ETT(1)     <---------ARR11(3)                                          ------>NtERF2<---------ANAC58     --------->ARR14(2)                                         ------------>AtMYB77     <---------ARR14(2)                                         <---------RAP2.3(1)                 <     --------->ARR11(3)                    --------->LBD16     <---------RAP2.3(2)                 --    --------->HSFB2a(1)          --------->GLK1(2)             <---------RAP2.6(2)                 <- ---------ANAC46    <---------GLK1(1)      ------>NtERF2       <---------DEAR3(1)                  <- ------>ZAT18     <---------HSFB2a(1)     <---------DEAR3(1)   <---------RAP2.3(3)                --- ----ANAC58       --------->HSFB2a(1)    <---------LBD16       <---------RRTF1(3)               <---- --YAB1   --------->HSFB2a(2)    --------->GLK1(1)             <---------RRTF1(2)               <---- ----ANAC58--------->LBD16      <---------GLK1(2)             <---------LBD16<------NtERF2     <-----   tgccgaagatttccagaagaaggtttccctcagagattccctctccggcgatattgagaacgaatgcggcggttccggtgtcgggtctactagttcgacg  1437800            ------>NtERF2           --------->DEAR3(1)           <---------DEAR3(1)          <------NtERF2          --------->ATERF1(1)         <---------RAP2.3(1)         <---------ATERF1(1)         <-----------HVH21         ------>NtERF2        --------->DEAR3(1)        --------->O2        <---------O2        <---------DEAR3(1)                                        --------->At4g35610      --------->LBD16                                             <---------At4g35610      <---------ATERF1(1)                                         <---------ZAT2      ------>NtERF2                                             ------>NtERF2     <---------DEAR3(1)                                        --------->DEAR3(1)    --------->ATERF1(1)                                       <------NtERF2    <------NtERF2                                           --------->DEAR3(1)    <---------LBD16                                        --------->At4g35610   <---------ATERF1(1)                                  <---------At4g35610 --------->ATERF1(1)                                    --------->At4g35610 <---------PCF2                                         --------->ZAT2       --------->ANAC46 ---------ATERF1(1)                                     <---------ZAT2   <---------ANAC58 ------->ABI4(2)                                     <-------TEIL --------->ZAT2    --------->TOE2(3) --------DEAR3(1)                           <-------GAMYB  <---------ABI4(2)--------->SPL7 --------ZAT18                             <-----------RAV1(1)<----------CDC5--------->ANAC58     <-- ------>ALFIN1                     <---------LBD16  --------->GLK1(2)    <---------ANAC58  <---------HSFB2a(1) -----MYB46(3)         ----------->RAV1(2) <---------MYB46(3)------>NtERF2<---------SPL7  --------->DAG2 -----DEAR3(2)         ================================RAV<---------ATERF1(1)--------->ANAC58 <------ ----DEAR3(1)<------NtERF2     ------>ZmHOX2a(1)   <---------ARR14(2)<-----------RAV1(2)---------->DOF2   gtgggctccggcgtcgcctctcaaaccctggtcctgcttcggagtctgttggagattcagcagcgccgagctcaggcttacgccaatctcaaaaggttcg  1437900                                           <---------MYB52(1)                                           --------->ARR14(2)                                           <---------ARR14(2)                                        <---------RAP2.6(2)                                        <---------ANAC58                    <---------ZAT6                                        <---------ANAC46              ============================RAV           <---------GLK1(1)            <---------ANAC58              <---------ANAC58    <------MYB83    --------->ATHB12                   <---------LBD16                ----------->RAV1(2) <---------MYB46(3)   <-------TEIL                    <---------MYB46(3)                 <---------ANAC46    <------MYB46(1) -------WOX13(1)   ---------->DOF2 <-----------RAV1(1)                <---------ANAC58<-----------RAV1(1) -TEIL     --------->GLK1(1)  <---------AHL20(2)                ------>ZmHOX2a(2)   <----------DOF2   attgattcattggaaatctctcaaagagttagtttatttgttgcggttttgttaagttccaattgatccattgcctgagagttagactttgttggtgaat  1438000                                                                                      ------>ZmHOX2a(1)                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                                =============HOX2a_HOX2a                                                                               --------->AGP1                                                                               --------->ARR14(3)                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                      <---------TOE2(3)                                        <---------ARR14(3)                      <---------TOE1(3)               <---------TOE2(2)        --------->ARR11(3)  <-                 <---------ZAT6      --------->ARR11(3)  <---------GLK1(1)     <---------ARR11(3)  --                 <---------ANAC46    <---------ARR11(3)  --------->GLK1(1)    --------->GLK1(1)    <-       <---------TOE2(3)<------ZmHOX2a(1)             <---------TOE1(2)      ----------->ARR10     --   gttgaaattgaggcaaatagtgtgaaggatagagagggagatgttttttatattcgtagatttccatgtttttgttactgagatcttcctctattaatct  1438100  Previous    Next  AGI:  At5g04900.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G13250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15332.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 1434775    to: 1437331    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04910.1    Description:  similar to hypothetical protein at5g04910 [Brassica rapa] (GB:ABV89667.1) Range:  from: 1437615    to: 1438771    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version