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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
<------------------------
ANAC81
--------->
ANAC58
<------
MYB46(1)
---------
GT1
<---------
MYB46(3)
<------
MYB83
----
ANAC55(2)
<-----------------
AGL1
<-------
GAMYB
--------->
MYB111(1)
--->
ANAC55(2)
<----------
DOF2
<---------
ANAC46
<--------
P
----
GT1
---------->
ID1
<---------
ANAC58
<---------
ZAT14
->
AHL20(2)
<-----------
GT1
<---------
ANAC58
<<<<<<<<<
MYB98
taaccaatttgtttttttctttgtcaaattttgggaatttgtttcag
agagttgcgttgggagcaaggaagaacaggtatgttactgaagagtag
gtgtc
1437200
--------->
AHL20(2)
<---
<---------
ANAC58
--------->
At5g28300
--------->
ANAC58
<---------
ANAC58
----------->
GT1
--------->
ANAC58
<---------
YAB1
<---------
MYB52(1)
--------->
TOE2(3)
--------->
AtLEC2
--------->
YAB1
<----------
DOF2
--------->
YAB1
--------->
ANAC46
aaactaagtattagaattgtattgctttctcagtttgttcaatggtaaataaaaacctctacattttgttcatgacaactccaaaacatgcaatctattg
1437300
------
<-----
<-----
------
<-----
-------
--------->
ATHB12
<------
<---------
WOX13(1)
---------
-------->
HAHB4
<---------
YAB1
<--------
ATHB1
--------->
TOE2(3)
--------->
ATHB12
--------->
TOE1(3)
<---------
ICU4
--------->
YAB1
<---------
ATHB12
<---------
ATHB12
--------->
ICU4
--------->
MYB46(3)
<---------
YAB1
---------->
DOF2
-------->
P
<---------
TOE2(3)
<---------
AHL20(2)
------>
MYB46(1)
<---------
GLK1(1)
--------->
ICU4
------>
MYB83
--------
GT1
<---------
At4g35610
--------->
GLK1(1)
<---------
YAB1
<-----------
GT1
<--
tacaatttggatttaagctcatttgcaaaaa
tgtgagatttctcagttaatgattgaagtgatgatttaaaagtcagttttttttttccaaccataataa
1437400
--->
AHL20(2)
----
AHL20(2)
---
ATHB1
<---------
AtMYB61
--------->
At4g35610
--->
ATHB51
<---------
ANAC58
--------->
ANAC58
----
ICU4
--------->
ARR14(2)
<---------
ANAC58
--------->
ANAC46
-->
ICU4
<---------
GLK1(2)
<------
ZmHOX2a(2)
--------->
ANAC58
---
YAB1
<---------
ARR14(2)
------>
ZmHOX2a(2)
<-----------
GT1
>
YAB1
--------------->
AGL15
--------->
ARR14(2)
--------->
AHL20(2)
<---------
-------
AHL20(2)
--------->
GLK1(2)
<---------
ARR14(2)
<-----------
GT1
----------->
RAV1(1)
tttataggcactattttgagaatcagaccagatttgtcgagactgggatccaaatgcctgtggtctagtttacaatttaacaagcagcaaaaatgtcatt
1437500
--------->
LBD16
----------->
GT1
------->
GAMYB
--------->
LBD16
------->
GAMYB
------------>
CBF
--------->
YAB1
--------->
DEAR3(1)
<---------
TOE2(3)
<---------
ATHB12
--------->
MYB46(3)
<-----------
GT1
------>
MYB46(1)
--------->
ARR14(2)
--------->
AHL20(2)
------>
MYB83
<---------
ARR14(2)
<---------
AHL20(2)
----------->
GT1
--------->
WOX13(1)
----------->
ARR10
----------->
GT1
<---------
At5g28300
--
HVH21
----------->
GT1
--------->
DEAR3(2)
---------->
DOF2
--------->
MYB52(1)
ccaaaccaatcaaaccgggtaaaaccgaagaaccgcctcaaccggacttgatatcaaagcgattaaaatcaaattacggttcaatttagtaaaatcgact
1437600
<
---
<-----
<-------
<----------
DOF2
----------->
HVH21
--------->
ANAC58
<---------
SPL7
--------->
ANAC58
------>
ZmHOX2a(2)
--------->
ZAT18
<------
ZmHOX2a(2)
<---------
ZAT18
---------->
ID1
<----------
ID1
--------->
ARR11(3)
--------->
MYB52(2)
<---------
CCA1(2)
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
MYB52(1)
<----------
DOF2
<---------
ANAC46
--------->
ARR14(2)
<--------
P
*
TSS
<---------
ANAC58
<---------
ANAC58
---------->
DOF2
<-----
<-----------
HVH21
<---------
ANAC58
<---------
ANAC58
<------
NtERF2
--------->
SPL7
<---------
MYB52(1)
<----------
DOF2
<-----------
RAV1(1)
---------->
DOF2
<---------
ARR14(2)
aaaccggttagttc
gcaactttctctttgcttcttcgtctctctctctctgtcgtgtttgagaagacgaaaagagtcggagagaaagatcggacg
atgag
1437700
<---------
ANAC46
<---------
ANAC58
<-----------
HVH21
--------->
ALFIN1
----------->
HVH21
--------->
LBD16
<---------
LBD16
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ATERF1(1)
<-------
GAMYB
<---------
ATERF1(1)
<---------
HSFB2a(2)
--------->
ABI4(2)
--------->
HSFC1(1)
<---------
DEAR3(2)
<---------
HSFC1(1)
<---------
MYB46(3)
<---------
GLK1(1)
<---------
DEAR3(1)
--------->
GLK1(1)
<------
NtERF2
--------->
ETT(1)
<---------
ARR11(3)
------>
NtERF2
<---------
ANAC58
--------->
ARR14(2)
------------>
AtMYB77
<---------
ARR14(2)
<---------
RAP2.3(1)
<
--------->
ARR11(3)
--------->
LBD16
<---------
RAP2.3(2)
--
--------->
HSFB2a(1)
--------->
GLK1(2)
<---------
RAP2.6(2)
<-
---------
ANAC46
<---------
GLK1(1)
------>
NtERF2
<---------
DEAR3(1)
<-
------>
ZAT18
<---------
HSFB2a(1)
<---------
DEAR3(1)
<---------
RAP2.3(3)
---
----
ANAC58
--------->
HSFB2a(1)
<---------
LBD16
<---------
RRTF1(3)
<----
--
YAB1
--------->
HSFB2a(2)
--------->
GLK1(1)
<---------
RRTF1(2)
<----
----
ANAC58
--------->
LBD16
<---------
GLK1(2)
<---------
LBD16
<------
NtERF2
<-----
tgccgaagatttccagaagaaggtttccctcagagattccctctccggcgatattgagaacgaatgcggcggttccggtgtcgggtctactagttcgacg
1437800
------>
NtERF2
--------->
DEAR3(1)
<---------
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
<---------
RAP2.3(1)
<---------
ATERF1(1)
<-----------
HVH21
------>
NtERF2
--------->
DEAR3(1)
--------->
O2
<---------
O2
<---------
DEAR3(1)
--------->
ZAT2
--------->
LBD16
--------->
At4g35610
<---------
ATERF1(1)
<---------
At4g35610
------>
NtERF2
------>
NtERF2
<---------
DEAR3(1)
--------->
DEAR3(1)
--------->
ATERF1(1)
<----------
CDC5
<------
NtERF2
--------->
DEAR3(1)
<---------
LBD16
<---------
ABI4(2)
<---------
ATERF1(1)
<---------
ZAT2
--------->
ATERF1(1)
--------->
ZAT2
<---------
ANAC58
<---------
PCF2
--------->
At4g35610
--------->
ANAC46
---------
ATERF1(1)
<---------
At4g35610
--------->
ANAC58
------->
ABI4(2)
<-------
TEIL
<---------
ZAT2
--------
DEAR3(1)
<-------
GAMYB
--------->
At4g35610
--------->
TOE2(3)
--------
ZAT18
<-----------
RAV1(1)
<------
NtERF2
--------->
SPL7
<--
------>
ALFIN1
<---------
LBD16
--------->
GLK1(2)
<---------
ANAC58
<---------
HSFB2a(1)
-----
MYB46(3)
----------->
RAV1(2)
<---------
MYB46(3)
------>
NtERF2
<---------
SPL7
--------->
DAG2
-----
DEAR3(2)
================================
RAV
<---------
ATERF1(1)
--------->
ANAC58
<------
----
DEAR3(1)
<------
NtERF2
------>
ZmHOX2a(1)
<---------
ARR14(2)
<-----------
RAV1(2)
---------->
DOF2
gtgggctccggcgtcgcctctcaaaccctggtcctgcttcggagtctgttggagattcagcagcgccgagctcaggcttacgccaatctcaaaag
gttcg
1437900
<---------
ARR14(2)
--------->
ARR14(2)
<---------
MYB52(1)
<---------
RAP2.6(2)
<---------
ANAC58
<---------
ZAT6
<---------
ANAC58
============================
RAV
--------->
GLK1(1)
<---------
ANAC46
<---------
ANAC58
<------
MYB83
--------->
ATHB12
<---------
LBD16
----------->
RAV1(2)
<------
MYB46(1)
<-------
TEIL
<---------
MYB46(3)
<---------
ANAC46
<---------
MYB46(3)
-------
WOX13(1)
---------->
DOF2
<-----------
RAV1(1)
<---------
ANAC58
<-----------
RAV1(1)
-
TEIL
<---------
GLK1(1)
<---------
AHL20(2)
------>
ZmHOX2a(2)
<----------
DOF2
attgattcattggaaatctctcaaagagttagtttatttgttgcggttttgttaagttccaattgatccattgcctgagagttagactttgttggtgaat
1438000
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
=============
HOX2a_HOX2a
<---------
ARR14(3)
--------->
ARR14(3)
--------->
AGP1
<---------
ARR11(3)
<---------
TOE1(3)
--------->
ARR11(3)
<---------
TOE2(3)
<---------
TOE2(2)
--------->
ARR14(2)
<-
<---------
ANAC46
<---------
ARR11(3)
--------->
GLK1(1)
<---------
ARR14(2)
--
<---------
ZAT6
--------->
ARR11(3)
<---------
GLK1(1)
--------->
GLK1(1)
<-
<---------
TOE2(3)
<------
ZmHOX2a(1)
<---------
TOE1(2)
----------->
ARR10
--
gttgaaattgaggcaaatagtgtgaaggatagagagggagatgttttttatattcgtagatttccatgtttttgttactgagatcttcctctattaatct
1438100
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AGI:
At5g04900.1
Description:
short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G13250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15332.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:
from: 1434775
to: 1437331
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g04910.1
Description:
similar to hypothetical protein at5g04910 [Brassica rapa] (GB:ABV89667.1)
Range:
from: 1437615
to: 1438771
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.