Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ------->TEIL                                    --------->ZAT18                                    <---------ZAT14                               <---------ZAT14  --------->YAB1               --------->ZAT14 <---------YAB1           <------ZmHOX2a(1) ------->YAB1           <---------TOE2(3)         <---------AHL20(2)           ---------->DOF2 ------DOF2     --------->MYB52(1)  <---------ZAT18          <---------ANAC55(2) --DEAR3(2)    --------->ARR14(2)   --------->ZAT14          --------->ANAC55(2) -DEAR3(1)     <---------ARR14(2)<---------ANAC46--------->AHL20(2)         --------->AtLEC2 --------   tttatcatcaagttgaagaaacggtttaggaagtgaagtgtacttagagaattttatatcaatacttgatgaagaaccctgcaaagtattaacagaaaag  10325600       --------->ATHB12       <---------AHL20(2)      --------->AHL20(1)                          --------->AHL20(2)      <---------AHL20(1)                          <---------AHL20(2)      --------->AHL20(2)                         --------->AHL20(2)                        <---------YAB1      <---------AHL20(2)         --------->HSFB2a(2)   ----------->GT1          --------->TOE1(3)   < -->DOF2       --------->GLK1(2) <---------HSFB2a(2)  --------->YAB1           ----------->RAV1(2) --   tcttcaaatttattgagaattttgcagactcagtttcagaaaacagacatatttaataagaaaaaactgagaaaatgcttaacctgaagtttgatgatgg  10325700                                  --------->ARR14(2)                               --------->ANAC58                               --------->ANAC58                               --------->ANAC46                                     --------->ARR11(3)                          <---------ZAT14                                        *TSS --------->TOE2(3)                       <---------ANAC58                                       --------->LBD16                       <---------ANAC58                                      <---------HSFC1(1)                   <---------ANAC58                                          <---------HSFB2a(2)     --------->MYB52(1)<---------ANAC46                            --------->ATHB12 <---------ARR11(3)     <---------DOF5.7(2)  --------->ZAT14                   <<<<<<<<<TAC1    --------->HSFB2a(2)  --- ------ZmHOX2a(1)  <---------ANAC58                       <---------ALFIN1  <---------LBD16   <------ --------->GT1   --------->ARR11(3)  --------->TOE2(3) --------->MYB46(3)<---------GLK1(1)---------->DOF2   aaggagataacgacgatgagagcttgagtgaagacgaaacctccatttctgaattcaacaacactcgaaagattgaattctggaaaaatctcaaaagcgc  10325800                                             --------->ALFIN1                                            <-------MYC4                                     <-------                                            ------->MYC4                                     <------MYB46(1)                                            <-------MYC2                                     --------                                            ------->PIF5                                     <------MYB83                                            ------->MYC2                                    <--------                                            ------->MYC3                                    ---------                                            <-------PIF5                                  <---------ANAC58                                           --------->O2                                   <---------ANAC46                                           <---------O2                                   <---------ANAC58            <---------ANAC46               --------->TGA1a    <---------MYB52(1)         <------MYB83          <---------ZAT14                  ========================MYC_MYB  <---------AHL20(2) <-----          <---------At4g35610              <---------TGA1a  <---------MYB46(3)           <------MYB46(1)  <---------ARR11(3)                      ------------>OsbHLH66       <---------LBD16 <---------MYB52(1)  <---------GLK1(2)                      <---------ALFIN1 <---------At4g35610    --------->MYB52(1)--  --------->ARR11(3)                   <---------ALFIN1   --------->At4g35610    <-----------GT1  <-- ------->DOF2                        --------->AtMYB61  ---------->CDC5 --------->LBD16<--------P<--- ----ID1  --------->ZAT14   <------------CBF<-------MYC3<-----------RAV1(2) --------->AHL20(2) ------   aaaagatttttgtgctgtggaatcgatagagattgtagaccacacacgtggggaagtctcagcggtttgttttccggtttaattaaccggtagggtggtt  10325900                                                                                              <xxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <------NtERF2                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  ------>NtERF2   <xx                                                                                  --------->LBD16 <xx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <---------LBD16 <xxx                                                                                 <---------ANAC46<xxx                                                                                <---------LBD16------                                                                          <---------ANAC58   <xxxxxxx                                                                          <---------ANAC58   <xxxxxxx ----------->HVH21                                           <---------AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(s) --MYB46(3)                                                 --------->AHL20(2)----------->HVH21<xxxxx ->MYB55(2)                                               <---------ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(s) -AtMYB61                                             ---------->DOF2 <---------GLK1(1)      <------- >ALFIN1  <------ZmHOX2a(2)                       --------->ANAC58    --------->GLK1(1)      <xxxxxxx ----ARR14(2)                                     --------->ANAC58   <---------ARR14(2)      <xxxxxxx ------->LBD16                  <-----------GT1   --------->ANAC46   --------->ARR14(2)     <xxxxxxxx -------ANAC46       --------->ANAC58             --------->AtLEC2  <------ZmHOX2a(1)<xxxxxxxxxxxxxxx ------LBD16         --------->ANAC58            <---------LBD16  <---------TOE2(3)<xxxxxxxxxxxxxxxxsmallRNA(s) --->ARR14(2)        --------->ANAC46 --------->At4g35610 --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)   ccggtgataccgatctaattcaaacgacatagttttactctgatgaagtttcacgcaaaagatttaatgaggaaatgcgtctgccgggagtcgaacccgg  10326000                                <xxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                              <xxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxsmallRNA(i)                              <xxxxxxxxxxxxxxxxxsmallRNA(si3)                             <---------MYB52(1)                             <xxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             <xxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->MYB46(3)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <-----------GT1                  xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  --------->YAB1<xxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                 <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->ICU4<xxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------ATHB12                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxsmallRNA(le3)            ----------->GT1<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->ANAC58 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------AtLEC2   --------->MYB52(1)     <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC46    --------->ATHB12<---------YAB1  --------->ZAT14   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    ------>MYB46(1) xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)                    <---------MYB46(2) --->LBD16<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ZAT6                  <---------MYB59 xxxxxxxxxsmallRNA(fl3)------>ZmHOX2a(1) --------->ANAC58                   <-----------GT1 xxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s)                       ----------->TBP xxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------YAB1 --LBD16<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   *TSS                   --------->YAB1 xxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->AHL20(2) xxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------YAB1               --- xxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->AHL20(2)        --------- xsmallRNA(se3)--------->WOX13(1)   <---------ZAT14             --------->TOE2(3)------>MYB83--------   gtctattgcttggaaggcaattatcctaaccgttggactacagacgctattgttaagcatatgaaaacttaattataaataccaaactaaacagaagtta  10326100            <-------PIF5  <---------ANAC58                                 <---------ICU4       ------->GAMYB  <---------ANAC58----------->RAV1(2)  <-----------GT1    --------->CCA1(2) ------->DOF2    -------->P     <------------CBF--------->YAB1       <-----------GT1    <---------MYB52(1) -->GT1     ------->PIF5     ------------>CBF--------->YAB1   <---------TOE2(3)        <---------At4g35610 --->GT1<---------ZAT18 <------ZmHOX2a(1) --------------->AGL15 --------->AHL20(2)     <-------GAMYB   aaaagcttgttgcacttgctacctgaggactaccaattgttttactatattgataatgagatttaagaaaataaccacataaaacattcagttgtttaag  10326200                                                        <---------DAG2                                                        <----------DOF2                                                       <---------ANAC58                                                       <---------ANAC58                                                  --------->At4g35610                    >>>>>>>>>>>>>>>>>LFY          --------->ZAT2                   --------->ANAC58               <---------ZAT2                   --------->ANAC58      <---------ANAC55(2)             <---------YAB1              --------->ANAC55(2)          <---------YAB1       --------->YAB1     <---------At4g35610    <----------DOF2      -------        <-----------GT1       <---------YAB1     <---------AGP1<---------CCA1(2)<----------DOF2  <---   tatgtataagttactattcttaagccaatgtcatcatagtaacatgtaatagagctggctttttcttatcttgagcttttgacttttgtttgagactagt  10326300                                                                                   --------->MYB52(2)                                                                                   ----------->ARR10                                                                                 ====================                                                                                 <---------MYB52(1)                                                                                 <--------P                                                                                =====================                                                                                <-------GAMYB                                                                               <---------MYB46(3)                                                                               --------->MYB55(2)                                                                              <---------ANAC46                                                                              <---------AtMYB61                                                                            <---------ANAC46                                                        <---------PCF2     --------->ALFIN1        <------ZmHOX2a(1)                               <---------ANAC46   <---------AtMYB61  <---------AHL20(2)              --------->YAB1     --------->ALFIN1     <---------ZAT14 --------->AHL20(2)               <---------ICU4    <-------MYC3          --------->ZAT14 <---------ANAC58 ---->GT1  --------->MYB52(1)    <---------ATHB12   ------->MYC3         <-----------RAV1(1) ------AHL20(2)          <----------DOF2           <-----------RAV1(1) <---------ANAC46   <---------ANAC58   aaattttataggataactgaaactaggctttatcaaacattacatagaagaacatgtgggggacaatttagttctgtgtggtggttagttttgcttaata  10326400                                  ---------->DOF2                                  ====================================bZIP_DOF                                ------>NtERF2                                --------->LBD16                    --------->ANAC58   --------->ANAC58      ------->PIF5                    --------->ANAC58   --------->ANAC58      ------->MYC4            --------->ALFIN1    <------NtERF2                <-------MYC4           ------->MYC2        --------->RAP2.6(2)           ------->MYC3           <-------PIF5        --------->RAP2.3(2)           <-------PIF5           ------->PIF5        --------->RAP2.3(3)           <-------PIF4           <-------MYC4        --------->DEAR3(1)            ------->PIF4           ------->MYC4        --------->RRTF1(3)            <-------MYC3           <-------MYC2       --------->RAP2.3(1)            <-------MYC2           ------->MYC3       --------->RRTF1(1)            --------->O2           <-------MYC3       --------->ERF1                --------->ANAC58          <---------TGA1a     --------->ATERF1(1)           --------->ANAC55(2)          --------->O2        <------NtERF2                 <---------ANAC55(2)          <---------ANAC46   <---------ATERF1(1)            <---------O2          --------->TGA1a    <---------RAP2.3(1)            --------->TGA1a          <---------O2      --------->ATERF1(2)             --------->ANAC58          ===================================bZIP_DOF       --------->bZIP60(2)                ------          <---------ANAC55(2)------>NtERF2  <---------AtMYB61------->MYC2<---------------AtSPL8<-----      ----------------->PIF3(1)--------->RRTF1(2)           <---------TGA1a <XXXXXXXXXXXXXXXXXXXXMIR778     ----------->HVH21      --------->DEAR3(1)            <------------OsbHLH66  --------->AHL20(2) ===================MYC_MYB <---------ATERF1(2) <---------MYB46(3)       --------------->AtSPL8<----- ===================MYC_MYB<---------RAP2.6(2) <---------ANAC46  --------->GLK1(1)     <-----------GT1   ttcaagactgacacgtggagcctagcaatgccgccgcaaagaagcaatggtgggcaatgggcacgtgatttctaatttgtacataaatttagccatttag  10326500  Previous    Next  AGI:  At4g18810.1    Description:  binding / catalytic/ transcription repressor. similar to HCF173 (HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173), binding / catalytic/ oxidoreductase/ transcription repressor [Arabidopsis thaliana] (TAIR:AT1G16720.1); similar to UOS1 [Pisum sativum] (GB:AAM19355.1); similar to transcriptional repressor [Brassica rapa] (GB:ABV89650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48021.1); contains InterPro domain NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); contains InterPro domain NmrA-like; (InterPro:IPR008030); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 10322449    to: 10325781    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18815.1    Description:  pre-tRNA. tRNA-Gly (anticodon: TCC) Range:  from: 10325976    to: 10326047    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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