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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------->
TEIL
--------->
ZAT18
<---------
ZAT14
<---------
ZAT14
--------->
YAB1
--------->
ZAT14
<---------
YAB1
<------
ZmHOX2a(1)
------->
YAB1
<---------
TOE2(3)
<---------
AHL20(2)
---------->
DOF2
------
DOF2
--------->
MYB52(1)
<---------
ZAT18
<---------
ANAC55(2)
--
DEAR3(2)
--------->
ARR14(2)
--------->
ZAT14
--------->
ANAC55(2)
-
DEAR3(1)
<---------
ARR14(2)
<---------
ANAC46
--------->
AHL20(2)
--------->
AtLEC2
--------
tttatcatcaagttgaagaaacggtttaggaagtgaagtgtacttagagaattttatatcaatacttgatgaagaacc
ctgcaaagtattaacagaaaag
10325600
--------->
ATHB12
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
HSFB2a(2)
----------->
GT1
--------->
TOE1(3)
<
-->
DOF2
--------->
GLK1(2)
<---------
HSFB2a(2)
--------->
YAB1
----------->
RAV1(2)
--
tcttcaaatttattgagaattttgcagactcagtttcagaaaacagacatatttaataagaaaaaactgagaaaatgcttaac
ctgaagtttgatgatgg
10325700
--------->
ARR14(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
--------->
ARR11(3)
<---------
ZAT14
*
TSS
--------->
TOE2(3)
<---------
ANAC58
--------->
LBD16
<---------
ANAC58
<---------
HSFC1(1)
<---------
ANAC58
<---------
HSFB2a(2)
--------->
MYB52(1)
<---------
ANAC46
--------->
ATHB12
<---------
ARR11(3)
<---------
DOF5.7(2)
--------->
ZAT14
<<<<<<<<<
TAC1
--------->
HSFB2a(2)
---
------
ZmHOX2a(1)
<---------
ANAC58
<---------
ALFIN1
<---------
LBD16
<------
--------->
GT1
--------->
ARR11(3)
--------->
TOE2(3)
--------->
MYB46(3)
<---------
GLK1(1)
---------->
DOF2
aaggagataacgacgatgagagcttgagtgaagacgaaacctccat
ttctgaattcaacaacactcgaaagattgaattct
ggaaaaatctcaaaagcgc
10325800
--------->
ALFIN1
<-------
MYC4
<-------
------->
MYC4
<------
MYB46(1)
<-------
MYC2
--------
------->
PIF5
<------
MYB83
------->
MYC2
<--------
------->
MYC3
---------
<-------
PIF5
<---------
ANAC58
--------->
O2
<---------
ANAC46
<---------
O2
<---------
ANAC58
<---------
ANAC46
--------->
TGA1a
<---------
MYB52(1)
<------
MYB83
<---------
ZAT14
========================
MYC_MYB
<---------
AHL20(2)
<-----
<---------
At4g35610
<---------
TGA1a
<---------
MYB46(3)
<------
MYB46(1)
<---------
ARR11(3)
------------>
OsbHLH66
<---------
LBD16
<---------
MYB52(1)
<---------
GLK1(2)
<---------
ALFIN1
<---------
At4g35610
--------->
MYB52(1)
--
--------->
ARR11(3)
<---------
ALFIN1
--------->
At4g35610
<-----------
GT1
<--
------->
DOF2
--------->
AtMYB61
---------->
CDC5
--------->
LBD16
<--------
P
<---
----
ID1
--------->
ZAT14
<------------
CBF
<-------
MYC3
<-----------
RAV1(2)
--------->
AHL20(2)
------
aaaagatttttgtgctgtggaatcgatagagattgtagaccacacacgtggggaagtctcagcggtttgttttccggtttaattaaccggtagggtggtt
10325900
<xxxxxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<------
NtERF2
<xxxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxx
------>
NtERF2
<xx
--------->
LBD16
<xx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
LBD16
<xxx
<---------
ANAC46
<xxx
<---------
LBD16
------
<---------
ANAC58
<xxxxxxx
<---------
ANAC58
<xxxxxxx
----------->
HVH21
<---------
AHL20(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--
MYB46(3)
--------->
AHL20(2)
----------->
HVH21
<xxxxx
->
MYB55(2)
<---------
ARR11(3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
-
AtMYB61
---------->
DOF2
<---------
GLK1(1)
<-------
>
ALFIN1
<------
ZmHOX2a(2)
--------->
ANAC58
--------->
GLK1(1)
<xxxxxxx
----
ARR14(2)
--------->
ANAC58
<---------
ARR14(2)
<xxxxxxx
------->
LBD16
<-----------
GT1
--------->
ANAC46
--------->
ARR14(2)
<xxxxxxxx
-------
ANAC46
--------->
ANAC58
--------->
AtLEC2
<------
ZmHOX2a(1)
<xxxxxxxxxxxxxxx
------
LBD16
--------->
ANAC58
<---------
LBD16
<---------
TOE2(3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--->
ARR14(2)
--------->
ANAC46
--------->
At4g35610
--------->
ARR11(3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
ccggtgataccgatctaattcaaacgacatagttttactctgatgaagtttcacgcaaaagatttaatgaggaaa
tgcgtctgccgggagtcgaacccgg
10326000
<xxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
MYB52(1)
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
MYB46(3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<-----------
GT1
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
YAB1
<xxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ICU4
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ATHB12
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(le3)
----------->
GT1
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
AtLEC2
--------->
MYB52(1)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC46
--------->
ATHB12
<---------
YAB1
--------->
ZAT14
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
xxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
MYB46(1)
xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
MYB46(2)
--->
LBD16
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ZAT6
<---------
MYB59
xxxxxxxxx
smallRNA(fl3)
------>
ZmHOX2a(1)
--------->
ANAC58
<-----------
GT1
xxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
----------->
TBP
xxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
YAB1
--
LBD16
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
*
TSS
--------->
YAB1
xxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
xxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
YAB1
---
xxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
---------
x
smallRNA(se3)
--------->
WOX13(1)
<---------
ZAT14
--------->
TOE2(3)
------>
MYB83
--------
gtctattgcttggaaggcaattatcctaaccgttggactacagacgc
tattgttaagcatatgaaaacttaattataaataccaaactaaacagaagtta
10326100
<-------
PIF5
<---------
ANAC58
<---------
ICU4
------->
GAMYB
<---------
ANAC58
----------->
RAV1(2)
<-----------
GT1
--------->
CCA1(2)
------->
DOF2
-------->
P
<------------
CBF
--------->
YAB1
<-----------
GT1
<---------
MYB52(1)
-->
GT1
------->
PIF5
------------>
CBF
--------->
YAB1
<---------
TOE2(3)
<---------
At4g35610
--->
GT1
<---------
ZAT18
<------
ZmHOX2a(1)
--------------->
AGL15
--------->
AHL20(2)
<-------
GAMYB
aaaagcttgttgcacttgctacctgaggactaccaattgttttactatattgataatgagatttaagaaaataaccacataaaacattcagttgtttaag
10326200
<---------
DAG2
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
--------->
At4g35610
>>>>>>>>>>>>>>>>>
LFY
--------->
ZAT2
--------->
ANAC58
<---------
ZAT2
--------->
ANAC58
<---------
ANAC55(2)
<---------
YAB1
--------->
ANAC55(2)
<---------
YAB1
--------->
YAB1
<---------
At4g35610
<----------
DOF2
-------
<-----------
GT1
<---------
YAB1
<---------
AGP1
<---------
CCA1(2)
<----------
DOF2
<---
tatgtataagttactattcttaagccaatgtcatcatagtaacatgtaatagagctggctttttcttatcttgagcttttgacttttgtttgagactagt
10326300
--------->
MYB52(2)
----------->
ARR10
====================
<---------
MYB52(1)
<--------
P
=====================
<-------
GAMYB
<---------
MYB46(3)
--------->
MYB55(2)
<---------
ANAC46
<---------
AtMYB61
<---------
ANAC46
<---------
PCF2
--------->
ALFIN1
<------
ZmHOX2a(1)
<---------
ANAC46
<---------
AtMYB61
<---------
AHL20(2)
--------->
YAB1
--------->
ALFIN1
<---------
ZAT14
--------->
AHL20(2)
<---------
ICU4
<-------
MYC3
--------->
ZAT14
<---------
ANAC58
---->
GT1
--------->
MYB52(1)
<---------
ATHB12
------->
MYC3
<-----------
RAV1(1)
------
AHL20(2)
<----------
DOF2
<-----------
RAV1(1)
<---------
ANAC46
<---------
ANAC58
aaattttataggataactgaaactaggctttatcaaacattacatagaagaacatgtgggggacaatttagttctgtgtggtggttagttttgcttaata
10326400
---------->
DOF2
====================================
bZIP_DOF
------>
NtERF2
--------->
LBD16
--------->
ANAC58
--------->
ANAC58
------->
PIF5
--------->
ANAC58
--------->
ANAC58
------->
MYC4
--------->
ALFIN1
<------
NtERF2
<-------
MYC4
------->
MYC2
--------->
RAP2.6(2)
------->
MYC3
<-------
PIF5
--------->
RAP2.3(2)
<-------
PIF5
------->
PIF5
--------->
RAP2.3(3)
<-------
PIF4
<-------
MYC4
--------->
DEAR3(1)
------->
PIF4
------->
MYC4
--------->
RRTF1(3)
<-------
MYC3
<-------
MYC2
--------->
RAP2.3(1)
<-------
MYC2
------->
MYC3
--------->
RRTF1(1)
--------->
O2
<-------
MYC3
--------->
ERF1
--------->
ANAC58
<---------
TGA1a
--------->
ATERF1(1)
--------->
ANAC55(2)
--------->
O2
<------
NtERF2
<---------
ANAC55(2)
<---------
ANAC46
<---------
ATERF1(1)
<---------
O2
--------->
TGA1a
<---------
RAP2.3(1)
--------->
TGA1a
<---------
O2
--------->
ATERF1(2)
--------->
ANAC58
===================================
bZIP_DOF
--------->
bZIP60(2)
------
<---------
ANAC55(2)
------>
NtERF2
<---------
AtMYB61
------->
MYC2
<---------------
AtSPL8
<-----
----------------->
PIF3(1)
--------->
RRTF1(2)
<---------
TGA1a
<XXXXXXXXXXXXXXXXXXXX
MIR778
----------->
HVH21
--------->
DEAR3(1)
<------------
OsbHLH66
--------->
AHL20(2)
===================
MYC_MYB
<---------
ATERF1(2)
<---------
MYB46(3)
--------------->
AtSPL8
<-----
===================
MYC_MYB
<---------
RAP2.6(2)
<---------
ANAC46
--------->
GLK1(1)
<-----------
GT1
ttcaagactgacacgtggagcctagcaatgccgccgcaaagaagcaatggtgggcaatgggcacgtgatttctaatttgtacataaatttagccatttag
10326500
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AGI:
At4g18810.1
Description:
binding / catalytic/ transcription repressor. similar to HCF173 (HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173), binding / catalytic/ oxidoreductase/ transcription repressor [Arabidopsis thaliana] (TAIR:AT1G16720.1); similar to UOS1 [Pisum sativum] (GB:AAM19355.1); similar to transcriptional repressor [Brassica rapa] (GB:ABV89650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48021.1); contains InterPro domain NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); contains InterPro domain NmrA-like; (InterPro:IPR008030); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:
from: 10322449
to: 10325781
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g18815.1
Description:
pre-tRNA. tRNA-Gly (anticodon: TCC)
Range:
from: 10325976
to: 10326047
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.