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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
ARR10
------->
TEIL
<---------
ARR14(2)
<---------
At4g35610
--------->
At4g35610
--------->
ZAT6
<XXXXXXXXXXXXXXXXXXXX
MIR835-3P
--------->
GLK1(2)
<----------
DOF2
--------->
YAB1
<----------
DOF2
<---------
GLK1(2)
---------->
HVH21
------------>
CBF
<----------
DOF2
--------->
ARR11(3)
------>
TGA1a
--------->
ARR14(2)
------>
ZmHOX2a(1)
<---------
ARR11(3)
-------
TGA1a
<---------
CCA1(2)
<----------
DOF2
<---------
At4g35610
<---------
RVE1(1)
tcgtgactctttcttctgaatcttctcaatcgaaattcttctctttagtcctcccattctgctttctttgatttcacagagattttgagggacactacct
8344200
<---------
ARR14(2)
--------->
ARR14(2)
<---------
MYB46(3)
<---------
CCA1(2)
<---------
AtMYB61
<---------
ANAC55(2)
<-------
GAMYB
--------->
ANAC55(2)
<---------
MYB52(1)
====================
<---------
DEAR3(2)
------>
ZmHOX2a(2)
<---------
DEAR3(1)
<------
ZmHOX2a(2)
<---------
DREB2C(2)
=====================
<---------
At1g77200
<---------
ARR11(3)
<---------
DEAR4(1)
--------->
ARR11(3)
--------->
DDF1
=============
HOX2a_HOX2a
------->
TEIL
--------->
TOE1(2)
<-----------
HVH21
<---------
ARR14(2)
<----------
DOF2
--------->
ANAC58
<-----------
RAV1(1)
--------->
ARR14(2)
--------------->
AGL15
--------->
ANAC58
<---------
AHL20(2)
==============
HOX2a_HOX2a
<---------------
AGL15
--------->
ANAC46
<---------
AHL20(2)
<------
ZmHOX2a(1)
<---------
ctctctctttatagatagtgtatgtaacaagaaacctagaaacaattgtatatataaaaatgtcggtggttttataggagggatctaggcccgtatcagg
8344300
--------->
GLK1(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
---------->
ID1
<---------
ATHB12
================
HOX2a_HOX2a
---------->
ID1
--------->
AHL20(2)
----
================
HOX2a_HOX2a
<----------
DOF2
--------->
AHL20(1)
<---
--
HVH21
<------
ZmHOX2a(1)
<-----------------
AGL1
<---------
AHL20(2)
<---------
YAB1
cccattgcaagaggaaattcaaaattttgtcttcttttggcccaaatcaatttaataaaatctgaattaggggttttgttttttgatttcatgatataaa
8344400
<---------
ICU4
---------->
DOF2
--------->
YAB1
<---------
ARR14(2)
--------->
DAG2
<---------
YAB1
--------->
MYB52(1)
---------->
DOF2
<---------------
AGL15
--------->
ARR14(2)
----->
ANAC46
<-----------
GT1
--------->
YAB1
----------->
GT1
-------
ID1
<-------
TEIL
<----------
DOF2
--------->
MYB52(1)
<----
cgacaaaaaccaaaagtacatatataaccagaactcaagagtcttttataataaaggcaaaccgaaaaaacagaaccggttatcaagtctctctcttcct
8344500
<---------
YAB1
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
bZIP60(1)
<-----------
HVH21
<-------
MYC2
<-------
MYC3
------->
MYC3
------->
MYC2
------->
PIF5
<-------
PIF5
------->
MYC4
<-------
MYC4
=======================================
>>>>>>>>>>
HY5
------>
ZmHOX2a(1)
--------->
ANAC55(2)
<-----------
GT1
<---------
TGA1a
<---------
YAB1
--------->
O2
<---------
ICU4
--------->
TGA1a
<--------
HAHB4
<---------
O2
<---------
YAB1
<------------
OsbHLH66
--------->
YAB1
--------->
TOE2(3)
<---------
ALFIN1
<---------
YAB1
--------->
YAB1
===============
MYC_MYB
--------->
ICU4
--------->
ICU4
<---------
MYB111(1)
--------->
CCA1(2)
--
--------->
YAB1
------------>
CBF
-------->
P
--------->
bZIP60(1)
============
----------->
GT1
--------->
ANAC58
<---------
MYB52(2)
<---------
ARR14(2)
----
------
DOF2
<---------
ALFIN1
--------->
ANAC58
--------->
MYB46(3)
--------->
ARR14(2)
----
tttctatccaaataacatccacttgtaataatcttatcgacaaacaatcgacctataactacccacgtgtcatcacgatacgattattatcctctctgat
8344600
*
TSS
--------->
ANAC58
--------->
ANAC58
<---------
ARR14(2)
------->
TEIL
<---------
GLK1(2)
------->
GAMYB
--------->
ARR14(2)
--------->
MYB46(3)
------>
ZmHOX2a(1)
<------
NtERF2
<-------
<---------
MYB52(2)
--------->
HSFB2a(2)
<---------
WRKY38(1)
=============
=========
MYC_MYB
<----------
DOF2
<---------
ANAC58
--------->
ZAT18
------->
MYB52(1)
<---------
DAG2
<---------
ANAC58
<------
ZmHOX2a(1)
<
===
HOX2a_HOX2a
--------->
HSFB2a(2)
<---------
ANAC46
<------
ZmHOX2a(1)
<-
----->
MYB46(3)
<---------
HSFB2a(2)
---------->
DOF2
<---------
WRKY12
---------->
DOF2
-->
ZmHOX2a(2)
<----------
DOF2
---------->
ID1
<---------
LBD16
<-----------
RAV1(2)
--
ccaacggaccc
aaaacatctatctctctttctcgaccttttgtctcctcgatctaaag
atggcggattcggacaacgattcaggaggacacaaagacggt
8344700
<-------
MYC2
------->
MYC2
------->
MYC3
--------->
YAB1
<-------
MYC3
==========================
HOX2a_HOX2a
<---------
TGA1a
<---------
ARR11(3)
--------->
ANAC58
<------
ZmHOX2a(1)
--------->
bZIP60(2)
<---------
TOE1(2)
<---------
O2
--------->
At4g35610
--------->
TGA1a
--------->
DOF5.7(2)
--------->
O2
--------->
TOE2(3)
--------->
ANAC58
--------->
TOE1(3)
--------->
ANAC55(2)
<---------
TOE1(3)
<---------
ANAC55(2)
<---------
TOE2(3)
<---------
ARR11(3)
<---------
ALFIN1
<---------
DOF5.7(2)
--------->
ANAC58
<------------
OsbHLH66
--------->
MYB52(1)
--------->
ANAC58
--------->
GLK1(2)
----------->
HVH21
======================
HOX2a_HOX2a
--------->
ANAC58
--
DEAR3(1)
--------->
ANAC46
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
------>
ZmHOX2a(1)
=====================
bZIP_DOF
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
TOE2(2)
<----
---------
GLK1(1)
<-----------
GT1
<---------
MYB52(1)
--------->
ANAC58
--------->
ARR11(3)
--------
ARR14(2)
<------
MYB83
=======================
HOX2a_HOX2a
--------->
TOE1(2)
<------
------->
ARR14(2)
<------
MYB46(1)
--------->
DOF5.7(2)
---------->
DOF2
--------->
SPL7
<------
ggaaatgcttcgacacgtgagcaagataggtttctaccgatcgctaacgttagcaggatcatgaagaaagcacttcctgcgaacgcaaaaatctctaagg
8344800
-
---
------
<------
<---------
O2
<-------
--------->
MYB52(1)
<-------
TEIL
----------->
HVH21
---------
--------->
ARR11(1)
--------->
YAB1
--------->
At4g35610
---------
---------->
DOF2
--------->
GLK1(1)
<---------
At4g35610
<------
ZmHOX2a(1)
--
ZmHOX2a(1)
<---------
GLK1(1)
--------->
ALFIN1
================
---
TOE2(3)
<---------
ARR14(2)
<-----------
HVH21
<-----------
HVH21
--------->
WOX13(1)
---
TOE1(3)
--------->
ARR14(2)
<---------
LBD16
--------->
O2
================
atgctaaagaaacggttcaagagtgtgtatcggaattcataagtttcatcaccggtgaggcttctgacaagtgtcagagagagaagaggaagacaatcaa
8344900
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(3)
<---------
ARR14(3)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
ARR14(2)
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC58
--------->
ALFIN1
---------->
HVH21
--------->
WRKY38(1)
<------
MYB46(1)
---->
GAMYB
--------->
At4g35610
<------
MYB83
--->
MYB52(1)
<---------
At4g35610
<---------
ANAC46
---
WRKY38(1)
<---------
DEAR3(1)
<-----------------
--
ATHB12
<----------
DOF2
--------->
ANAC46
<---------
AtMYB61
>
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ALFIN1
>
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ALFIN1
<---------
DEAR3(1)
=============
HOX2a_HOX2a
<---------
ZAT14
<---------
ANAC46
--------->
MYB111(2)
============
HOX2a_HOX2a
--------->
ZAT18
<------
ZmHOX2a(1)
---------->
DOF2
<------
ZmHOX2a(1)
cggtgacgatcttctttgggcgatgactacgctagggtttgaggactacgtggagcctctcaaggtttatctgcaaaagtatagggaggtggaaggagag
8345000
<---------
At4g35610
--------->
ZAT2
<---------
ZAT2
--------->
ALFIN1
<------
NtERF2
--------->
ATERF1(1)
<---------
MYB46(3)
<---------
DEAR3(1)
--------->
ALFIN1
<-----
--------->
ATERF1(1)
<---------
MYB46(3)
<------
ZmHOX2a(1)
--------->
ABI4(2)
--------->
ATERF1(1)
--------->
ALFIN1
--------->
ALFIN1
<---------
SPL7
<----------
ARF1
<------
ZmHOX2a(1)
--------->
At4g35610
<-----
<----------
ID1
--------->
ALFIN1
--------->
At4g35610
<---------
At4g35610
<-----
<------
NtERF2
<------
MYB46(1)
<---------
ORA47(2)
--------->
ZAT2
<---------
DEAR3(1)
<-----------
RAV1(2)
<------
MYB83
<---------
ABI4(1)
<---------
GLK1(1)
<-----
--------->
ANAC58
<---------
AtMYB61
<-------
GAMYB
--------->
GLK1(1)
<------
NtERF2
--------->
ANAC46
<------
ZmHOX2a(1)
<---------
DREB2C(2)
<---------
ZAT2
<---------
AtMYB61
--------->
ANAC58
--------->
ANAC58
--------->
ALFIN1
<------
ZmHOX2a(1)
--------->
MYB55(2)
<---------
LBD16
<---------
TOE2(3)
<------
NtERF2
--------->
ALFIN1
------->
TEIL
---
------
TaNAC69(2)
--------->
ANAC58
<---------
DEAR3(1)
--------->
ALFIN1
<------------------
SPL14
aagactactacggcagggagacaaggcgataaggaaggtggaggaggaggcggtggagctggaagtggaagtggaggagctccgatgtacggtggtggca
8345100
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AGI:
At4g14540.1
Description:
CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family. Identical to Nuclear transcription factor Y subunit B-3 (NFYB3) [Arabidopsis Thaliana] (GB:O23310); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) [Arabidopsis thaliana] (TAIR:AT5G47640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61076.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41159.1); contains InterPro domain Transcription factor, NFYB/HAP3, conserved site; (InterPro:IPR003956); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958);
Range:
from: 8344612
to: 8345214
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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