Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->ANAC58                                                      ---------->DOF2                              --                                                     <------ZmHOX2a(1)                             --                        <---------ARR11(3)        <---------LBD16                                  --                        --------->ARR11(3)        <---------HSFB2a(2)                              -- ----->ANAC46           --------->GLK1(2)         <-----------RAV1(2)                   ---------->DOF2 -->TEIL          ----------->GT1          <---------At4g35610                      <---------ANAC55(2) -------AtSPL3    --------->ANAC58     --------->ANAC46 --------->ANAC58   --------->YAB1   --------- -------AtSPL8    --------->ANAC58  <---------ZAT18--------->LBD16         ----------->GT1  <--------   cggctcaaatccatgagagcaagaaaaatcttgagtaatccactcagttgctccaggaaagcaaatgcttatacgaatgataaatctcgtaaaaggtctt  6594100         --------->ZAT18         <---------ZAT18   <------MYB46(1)         --------->LBD16   <------MYB83        ------->GAMYB      <---------At5g28300 --------->MYB59     --------->MYB46(3)                                  ---     <-----------GT1   <---------REM1(1)    ----------->RAV1(1)                                  <--- ------->ANAC58    --------------->AGL15    --------->MYB52(1)                                 <----- ------->ANAC46   ----------->RAV1(2)    --------->ANAC58                                      ------ ------->ZAT6    --------->MYB52(1)      --------->ANAC58         <---------ALFIN1             <----- ------->ANAC58  ------->TEIL          ---------->DOF2         ------->GAMYB                   ------ >ARR11(3)    --------->ANAC58 --------->DEAR3(2)        <------ZmHOX2a(1)           <---------At4g35610 -ARR11(3)    --------->ANAC58--------->MYB52(1)     ---------->DOF2 <----------DOF2 --------->At4g35610   aacgctattaccgcacaagtacctgatgtaggtaccgaagagaaagcaacagcctgaaaggacaactcacactttggcaagtttataagctccctagtat  6594200                                               --------->AtMYB61                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                ------>ZmHOX2a(2)                               <---------GLK1(1)                              <---------ARR14(2)                              --------->ARR14(2)                              --------->ARR11(3) ------>MYB46(1)                  ------->GAMYB       <------ZmHOX2a(1)      <---------ARR11(3) ------>MYB83                    <------------MYB.PH3(2)       ================================HOX2a_HOX2a                               <---------MYB111(2)     <---------TOE2(3)        <---------AGP1 -------->P<----------DOF2           <---------MYB111(1)  <--------P                  <-----------ARR10------->GAMYB                     <---------MYB46(2) ------>ANAC55(2)            <---------CCA1(2)--------->MYB46(3)                 --------->MYB46(3) ------LBD16           --------->ZAT14   --------->ANAC46                <---------DEAR3(2) ----ARR14(2)          <---------ZAT14   --------->ANAC58        --------->MYB46(3)      ----------->GT1 --->ZAT14           --------->ANAC46    --------->ANAC58 <---------ANAC46       <---------MYB52(2) ----ZAT14        <---------ZAT18       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------MYB46(3)<--------P --->ARR14(2)     --------->ZAT18   <xxxxxxxxxxxxxxxxsmallRNA(i) <---------MYB52(2)   <---------LBD16   acgggttgaggaagaacatgtccactaaactggatcttcgcataagcaaccatccgtctttcgagtaacaaacatcggttccaactaactcgggtaaatt  6594300                                                                                        -------->P                                                                                       <---------ALFIN1                                                                                      <---------ALFIN1                                                                              <---------ANAC58                                                     <---------LBD16          <---------ANAC58                                              <---------MYB52(1)             <---------HSFB2a(1)                                             <---------RAP2.6(3)             --------->HSFB2a(1)                                         --------->ANAC46   <---------At4g35610       --------->MYB46(3)                                         --------->ANAC58   --------->At4g35610     --------->ANAC46                                         --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          ------>ZmHOX2a(2) --------->RAP2.6(2)              <---------HSFC1(2)     <-----------GT1 <---------ATHB12<-----------HVH21   ---------->DOF2     --------->HSFC1(2)   cagtgtgtaactcttccttcccaatggatcgaagagaatagtcacgccgtaatgtctcggaaagctgataacccatggatgcttctccacaacccgaact  6594400                  --------->ZAT2       --------->ANAC58                  <---------ZAT2  --------->ARR14(2)                 --------->AtLEC2 <---------ARR14(2)                                            -----            --------->ANAC58  <---------At4g35610                                 ---------->DOF2            --------->ANAC46  <---------LBD16                                   <---------HSFB2a(2)            --------->ANAC58  --------->LBD16                            <---------YAB1     <--------        <----------DOF2  ----------->HVH21                             <---------ICU4  <---------ANAC58        <---------DAG2 <---------At4g35610        <----------DOF2     --------->ICU4   <---------ANAC58   <---------At4g35610 <------NtERF2   --------->ANAC58               <---------YAB1--------->DAG2   --------->At4g35610 --------->At4g35610------->TEIL         --------->CCA1(2)--------->HSFB2a(2)   gattcagcggctttacgccatgctcggcagaccgcggatgcacgaatgttatcttttaaaccaagataagacattattatttccaaaaggcttgatgtaa  6594500                                                                                 <---------AHL20(2)                                                                  <---------TOE2(3)                                                                 ---------->DOF2 <---------AHL20(1)                                                                --------->AHL20(2)    --------->MYB52(1)                                                                <---------AHL20(2)   --------->AHL20(2)                                                               <---------YAB1    --------->AHL20(2)                                                             --------->ATHB51    --------->AHL20(1)                                                             <--------HAHB4     --------->AHL20(2)                                                             <---------ICU4   --------->TOE2(3)       --------->YAB1                                     --------->YAB1     --------->YAB1  --------->At4g35610         <------------CBF      <---------WRKY18(1)      <--------HAHB4         -  ------------>CBF         >>>>>>>>>>>>>>>>>LFY    --------->WRKY12  --------->ARR11(3)            <- --------->ANAC58         <---------At4g35610      ----------->HVH21 <---------ARR11(3)            -- --------->ANAC58   <<<<<<<<<TBF1           <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------ICU4       --- ---->MYB59  <---------ARR11(3)           <---------ARR11(3)--------->ICU4  <------ZmHOX2a(2) <------ -REM1(1)    --------->ARR11(3)           --------->ARR11(3)<---------YAB1  <---------ATHB12  -------   ggtcagcaatagtaagaacttcttcttcagcccattgttactaacatcttcgtttgaccttcataattaaagatttcgatcattaaattaactgaaataa  6594600        <----------DOF2       <---------ANAC58       <---------ANAC58   <------------CBF <---------AHL20(1) --------->ARR11(3) --------->AHL20(1) ---------->TBP                                                                        --------->LBD16 --------AHL20(1)    --------->ANAC58                                            ---------->DOF2 ------->AHL20(1)    --------->ANAC58                                          --------->ANAC58 ------>AHL20(2)    --------->SPL7  --------->ANAC46   <------------CBF        --------->ANAC58    -- ---AHL20(2)      <---------RAP2.6(3)             ----------->GT1              --------->ANAC46   --- -->AHL20(2)    <------NtERF2    <----------ID1 <------------CBF       <---------ARR11(3)    --------   atatatattgcttttggagccgtaagacatgaaataccacaaaaccatgagattgaaaattgtctcaaaccaagatgctacaagaaagccgagaaaacaa  6594700                                                                     --------->ATHB51                                                               --------->LBD16                                                              <---------LBD16                                                              <---------ANAC46                                                             <---------LBD16                                                            <-----------GT1                                                        <---------ICU4<------------CBF                                                        --------->ATHB51      --------->ANAC58                                                        --------->AHL20(2)    --------->ANAC58                                                        <---------AHL20(2)    <---------MYB52(2)                                                       --------->ICU4<--------ATHB1                                                       <---------YAB1--------->ATHB12               -                                      --------->YAB1 --------->YAB1  <---------ICU4              <--- -------->DOF2                 <------------CBF      <---------ICU4 <---------ATHB51          <------ ------>YAB1               --------->TOE1(3)        <---------YAB1  --------->ICU4     --------->ANAC46 ---->CBF                  --------->TOE2(3)        --------->ICU4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   taaaagttgtcccaaactcatcttagaaaccctaattgtttcatagtggaagttataattatttacgggaataattggccacgaactccacgaagatgca  6594800           --------->YAB1          <---------ATHB12       --------->AHL20(2)       <---------AHL20(2)  <------ZmHOX2a(2) --------->AGP1 -------->At4g35610            <---------AHL20(2) ------At4g35610     <---------GLK1(2)                                   --------->CCA1(2) -TEIL<---------ATHB12        --------->AHL20(2)               --------->TOE2(3)   tcagatcaataaatcatgctatagattctacatttaatatggcatcttgttcataaaaccaaaaacctttgatagagatgggatagagagtattgagaga  6594900                                                                                             <-------                                                                                          <---------ANAC55(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                                   <---------CCA1(1)                                                                                   --------->RVE1(1)                                                                                   --------->CCA1(1)                                                                                   <---------GLK1(1)                                                                                   --------->GLK1(1)                                         --------->At4g35610                       <---------RVE1(1)                             <----------DOF2                            ----------->GT1   --------->ANAC55(2)                           --------->At4g35610      =================================================                      ------>MYB83------>ZmHOX2a(1) --------------->AGL15         <---------ARR11(3)     --------->CCA1(2)------>MYB46(1)    <---------At4g35610       ---------->DOF2--------->ARR11(3)   gagatagagatgggataactcaccaaatgagctttcctctctgagttgccatttcgatttagagaagatgaaaggggagaattagatatcttatgtaaca  6595000  Previous    Next  AGI:  At4g10695.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15899.1); contains domain PTHR13980 (PTHR13980); contains domain PTHR13980:SF12 (PTHR13980:SF12) Range:  from: 6593770    to: 6594474    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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