Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->YAB1                        <---------AHL20(1)                        --------->AHL20(1)                        <---------AHL20(2)                        --------->AHL20(2)                     <--------HAHB4                     --------->ATHB51                     <---------ICU4                     <--------ATHB1                     -------->HAHB4                     --------->YAB1                    --------->AHL20(2)                    <---------ATHB51                    <---------YAB1                    --------->ICU4                   <---------YAB1                  <---------ICU4            --------->ALFIN1                  --------->YAB1            ----------->GT1                 --------->ICU4            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------YAB1           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->YAB1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------AHL20(2)        <---------ANAC46 <-----------GT1                   ----------          <---------AHL20(2)--------->AHL20(2)     --------->YAB1                     --------->YAB1          --------->AHL20(2)<---------AHL20(2)     ----------->GT1                    --------->AHL20(2) ------>GT1<---------AHL20(2)  --------->ZAT6<-------GAMYB                  --------->At4g35610   gttaaaaacgaattaaataataataattaattaaaactagttaggggtgttaattgtaattacacaattactaaaaacatctgagtaataaaaaaaagat  2445500                                                          --------->ARR11(3)             ------>ZmHOX2a(2)                                                         --------->RVE1(1)              --------->GLK1(1)                                                  --------->TOE2(3)               <---------ARR11(3)             <---------KAN4(2)               --------->AHL20(2)        <---------HSFB2a(2)           <------ZmHOX2a(1)                 <---------ICU4            --------->HSFB2a(2)   --------------->AGL15                     <---------AHL20(2)    --------->ICU4 --------->ARR11(3)   <---------------AGL15                     --------->ATHB51 ----------->GT1    --------->CCA1(1)  <-----------------AGL3                    --------->ICU4--------->GLK1(2)      --------->RVE1(1)  <-----------------AGL2                 <------ZmHOX2a(1)<---------ARR11(3) --------->AHL20(2)     - >DOF2   <---------TOE2(3)             <---------TOE1(2) --------->CCA1(1)   <---------AHL20(2)    <-   gtgttctattttaggaataaacatacaaatgtgttttatcttaggaattatttcttaaaaaatcttgtaatttttagaaataaatatctgatctcttccc  2445600                                                                                               <-----                                                                                            <--------                                                                                         ----------->HVH21                                                                                        --------->LBD16                                                                                    --------->MYB52(1)                                                                                    ------>MYB83                                                                                    <---------ARR14(2)                                                                                    ------>MYB46(1)           ---------->ID1                                                           --------->ARR14(2) -------->YAB1                                  <---------AHL20(2)                <---------MYB59 --------ATHB12  <---------ICU4   <-----------GT1        --------->YAB1          ----------------->AGL1   aataacaatttttgtcccattagtaccaaaaccatatttcaatttgggatttatttctataatatcaaacccgaattttgtaaaccgaaccgggacagga  2445700                                       --------->WOX13(1)                                      <---------ICU4                                     <---------ATHB12                                   --------->YAB1                              <-------TEIL                            ------->PIF5                            <-------PIF4                            ------->PIF4                            ------->MYC3                            <-------MYC2                            ------->MYC4                            <-------MYC3                            ------->MYC2                            <-------PIF5                            <-------MYC4                           <---------ANAC58                           --------->ANAC55(2)                        <-------TEIL   --------->ANAC46                           <---------ANAC46                        <---------MYB46(3)--------->ANAC58                           <---------ANAC55(2)                    --------->ALFIN1   --------->ANAC58                           <---------TGA1a                   <<<<<<<<<<<<<<<<<LFY--------->HSFB2a(2)  <----------ID1      --------->YAB1 <---------YAB1         <------ZmHOX2a(2)    <---------HSFB2a(2) -ZmHOX2a(1)--------->ZAT18--------->TGA1a                 <---------ARR11(3) ------->TEIL ---RAV1(2) <---------ZAT18<---------ANAC58                --------->ARR11(3)<---------CCA1(2)    <--   taatgggacaaatgagcacttgtattatcacgtgcattaatcattcaccagttttatagtagatcacagtggttcatatgtatctagacgcaaactttga  2445800                                                                --------->YAB1                                                          ----------->RAV1(2)                                                         *TSS   <---------ICU4                                                         ------>MYB46(1)                                                         ------>MYB83                                                        --------->MYB55(1)                                                       <---------ALFIN1                                                       --------->AtMYB61                                                       <---------MYB111(1)                          <                                                       --------->DEAR3(1)                           <                                           --------->ICU4-------->P                                 <                                       ------------>CBF--------->MYB46(3)                           <          ------->GAMYB                --------->ZAT14 <---------MYB55(2)                           <          ------------>CBF       ------>ZmHOX2a(2)     <---------MYB111(2)                         --         --------->ANAC58       <------ZmHOX2a(2)  --------->MYB46(3)                         <------         --------->ANAC46      <---------AGP1     --------->ANAC58 <---------ICU4             <------         --------->ANAC58      --------->ARR11(3) --------->ANAC58 --------->YAB1            --------   --------->YAB1              <---------ARR11(3) --------->ANAC46<---------YAB1          <---------ZAT6 -------ATHB12   --------------->AtSPL8<---------ZAT14 <---------MYB46(2)             --------->LBD16   atcattcatcaacgcaatctaagtacaaatatagatctcactgcaatgtttcaagcaccaacctgatcatcatcaaaaccatttcatccgtagtggtcaa  2445900             --------->MYB52(2)             <---------MYB46(3)             <------MYB83            <---------DEAR3(1)            <---------AtMYB61           <---------MYB52(1)    <----------DOF2  --------->ATERF1(1)  <---------At4g35610  <------NtERF2                                 --------->ARR14(2) <---------RAP2.3(1)                            <---------ARR14(2) ------>NtERF2                              <---------------------WRI1 <---------ATERF1(1)                        --------->SPL7 <---------ERF1                            --------->ALFIN1         <---------ANAC55(2) ---------RAP2.6(2)                       <---------SPL7            <---------ANAC58 ---------ANAC46<---------MYB46(3)       <---------bZIP60(2)        <---------ANAC58 ---------DEAR3(1)                       <---------ANAC46           --------->ANAC55(2)     <-------- ---------RAP2.3(2)                      <---------ANAC58        --------->ARR14(2)    --------->ZAT18 ---------RAP2.3(3)                      <---------ANAC58        <---------ARR14(2)  --------->DAG2 ------->RAP2.6(3)                    --------->ALFIN1    --------->LBD16           --------->DAG2 ---WRKY38(1)<------MYB46(1)        --------->ALFIN1     --------->ANAC46          ---------->DOF2 ---WRKY12<-------GAMYB            <------ZmHOX2a(1)    <---------LBD16       --------->TOE2(3) ->WRKY18(1)<---------MYB46(3)  <------ZmHOX2a(1)  <----------DOF2  <---------ANAC46---------->DOF2   tggcggcttctccgttggtggttcagaaaacagaggaggagtggcgtgcggttctttctccggagcagtttcgtattcttcgtcaaaaaggcactgagta  2446000                                                                                 <-----------RAV1(1)                                                                                <---------TOE2(2)                                                                                ------->TEIL                                                                             <---------ANAC46                                                                             <---------ANAC55(1)                                                                             <---------ANAC55(2)                                                                      <---------ZAT18                      <----------DOF2                                 --------->ZAT18                     <---------DAG2                            <---------YAB1--------->ANAC55(2)                  <-----------------AGL1                  --------->ATHB12   <---------ANAC58             <-----------GT1              <---------TOE2(3)--------->ARR11(3)<---------ANAC58 -------AtSPL3  <----------DOF2      <----------DOF2     --------->ICU4   <---------MYB52(1)   cgtttttgttttgtttttctttcccttttggtataatttcttttaatgaaattttgggaatgattttgatagtgcccttacgtatgttggattagccatt  2446100                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                      <---------ANAC58                                                                                      --------->O2                                                                                      <---------O2                            --------->YAB1                                            --------->TGA1a                      <---------ICU4                                                  <---------TGA1a                      <--------HAHB4                                                  <---------ANAC58                      --------->ATHB51                                               ------>MYB83                     --------->ICU4                     --------->ATHB12           --------->TOE1(2)                     <---------YAB1                    <---------YAB1              --------->TOE2(2)                   --------->YAB1                   ============================================bZIP_DOF                  ----------------->AGL3            <----------DOF2           --------->YAB1             <---------TOE1(3)                     <---------DAG2       --------->ANAC46   <---------ANAC58             <---------TOE2(3)                 ----------->HVH21      <-----------GT1------>MYB46(1)   agacttgagtaatttagggtttcataattagcatcatacatgtgagtatgtgaccttttgatttgagtctttttacccaagaatacctacgtggcttgga  2446200                                       --------->ANAC46                                       --------->ANAC58                           <---------AHL20(2)                             --------->WOX13(1)                          --------->AHL20(2)                             <---------------AGL15                         <---------AHL20(2)                             <-----------------AGL2                      <---------AHL20(2)                                ----------------->AGL2                      --------->AHL20(1)                                ----------------->AGL1                      --------->AHL20(2)                                ----------------->AG                      <---------AHL20(1)                                ----------------->AGL3                      --------->ARR11(3)   -------->P      --------->YAB1--------------->AGL15                      <---------ARR11(3)  --------->MYB52(1)            <-----------------AGL1            <---------ANAC58           --------->ANAC58   <---------YAB1<-----------------AG            <---------ANAC46        <------NtERF2      <---------YAB1  <-----------------AGL1            <---------ANAC58   --------->MYB59        <---------GLK1(2)<-----------------AG       <-----------RAV1(1)<---------AHL20(2)--------->MYB46(3)   <---------REM1(1)   ttcagaacattgttgctcgtttaatatattaattaggctgcaagcaaccgttgaaagattattatagatgtagaaccaattagggaaattggatgatgtt  2446300                                                                                                 ----                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                        --------->ANAC55(2)                                                                                        <---------ANAC55(2)            <------MYB83  --------->YAB1    --------->ICU4                   <---------AHL20(2)------            <------MYB46(1)         <------ZmHOX2a(1)    <-----------GT1  ----------->GT1    --------   ttgtttttggaatttggttttgtttgtatcatatataaggagagtattgattcagtgtttcactgtttcatataagtagtttattgaagtatgtaatgat  2446400  Previous    Next  AGI:  At4g04830.1    Description:  methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein. similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83184.1); contains InterPro domain Methionine sulphoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like (InterPro:IPR011057) Range:  from: 2445857    to: 2447084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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