Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->AHL20(2)                                                    <---------AHL20(2)                              < --------->GT1                                 --------->AHL20(2)                                  <- -------AGL15                <-------TEIL      <---------AHL20(2)                                ---- ------>AGL15           --------->AHL20(2)     <---------AHL20(1)            <---------MYB46(3) <----   tttgtaaaaactgaatacccaaacaaaaaaatacatgaaatacaagtattttatttaaaatttagacctgttctcttattcgttggactaaatatacaat  18266600                                                             ----------->GT1                                                            --------->ALFIN1                                                            <---------------AtSPL3                                                            --------------->AtSPL3                  x            --------->AHL20(2)                              --------------->AtSPL8               <---           <---------AHL20(1)                            <---------ARR14(2)                      <---           --------->AHL20(2)                 <---------ICU4<---------------AtSPL8       --------->CCA1(2)        --------->AHL20(2) ----------->GT1   --------->AHL20(2)                         --------->ARR11(3)    ----------->GT1     --------->MYB52(1)   <---------AHL20(2)                         --------->ARR14(2) ---------AHL20(2) --------->AHL20(2)        --------->AHL20(1)                         <---------ARR11(3) --------YAB1   --------->YAB1        ----------->GT1<---------LBD16                    <---------ARR14(2) ----->YAB1<---------AHL20(2)        --------->CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---- -----ATHB51<---------AHL20(2)--------->YAB1--------->AHL20(2)   --------->REM1(1)      --------->ARR11(1)   aataaatggataaattatttataaaataacagttataagatagaaaaaaaattactacggatgtggtacaacaaatttctcgttaagagagatatgggcc  18266700                                     <---------ARR14(2)                                  <---------ANAC46                                 --------->LBD16                                --------->DEAR3(1)                               --------->ATERF1(1)                               <------NtERF2                              ------>NtERF2                              <---------ATERF1(1)                             <---------ALFIN1                             --------->DEAR3(1)                             --------->ARR14(2)                            <---------ABI4(2)          <------NtERF2    <---------RAP2.6(3)         <---------ATERF1(1)<------NtERF2         ------>NtERF2     ------>NtERF2         <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2)         <---------RAP2.6(3)--------->ATERF1(1)        --------->DEAR3(1)--------->RAP2.6(2)                                     --------->ZAT18        <---------ATERF1(2)--------->LBD16                                        <---------ZAT18        <---------RAP2.6(2)<---------ATERF1(1)                              <---------ICU4        --------->ATERF1(2)<-----------HVH21                                --------->ATHB12       --------->ATERF1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------TGA2(1)    -------       --------->RAP2.6(3)<---------ATERF1(2)                            --------->bZIP60(1) <-------     --------->ALFIN1     --------->ATERF1(2)             <---------At4g35610     <---------ZAT14 ---  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------ANAC55(2)           --------->REM1(1)   <------- xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------CCA1(2)<---------ARR14(2)  <---------bZIP60(1) -------- ------DEAR3(2)           --------->ANAC46 --------->ANAC58            <-----------GT1  <xxxxxxxxxxxx ------SPL7              <---------LBD16   --------->ANAC58 <----------DOF2<---------YAB1   <-------- -----MYB46(3)           --------->RAP2.6(3) --------->ANAC46 <----------DOF2     --------->ZAT14<---   ggtcgaagtgccggcctctatagataagccggcaccgcgtatattacgcacaacgtattccgctctttttttgttacatcattgtgcagaatgcagattc  18266800                                         --------->AHL20(2)                                         --------->YAB1                                         <---------AHL20(2)                                        <---------YAB1                                      --------->YAB1                                      <---------ICU4                                     --------->ICU4                                     <---------YAB1                                    --------->AHL20(1)                                    --------->AHL20(2)                                    <---------AHL20(1)                                    <---------AHL20(2)         ---------->DOF2           <---------ICU4   ---------->DOF2                 --------->YAB1 --------->MYB46(3)               <---------YAB1 -->GLK1(2)                    <---------AHL20(2) --GLK1(2)                     --------->AHL20(2) --->ZmHOX2a(1)            --------->AHL20(2) --ARR14(2)               <---------AHL20(1) ->ARR14(2)               --------->AHL20(1) xxxxsmallRNA(i)          <---------ARR11(3)                       ------>ZmHOX2a(1)         -------- -At4g35610               --------->ARR11(3)                   <---------PCF2               <-------- ------MYB59 ---------->DOF2  --------->AHL20(2)     <---------ATHB12   ---------->DOF2 ------------>CBF   ctaaccaaagaaaaagaaagtttttaaaaatatttaattataattatatgatgaaatcaagaatgggtcctccaaaaatcgagcttatggcccaataaag  18266900                                    <-------MYC2                                    ------->MYC2                      --------->At4g35610                                    ------->MYC3                 --------->YAB1    --------->TOE2(3)         <-----------GT1                    <---------ICU4   ----------->GT1     --------->YAB1                           <---------YAB1                 ------   --------->ANAC58  --------->ANAC58       ------------>CBF    *TSS<---------ICU4             ------   --------->ANAC58  --------->ANAC58       <---------ATHB12  --------->YAB1            --------->TOE2(3) -->DOF2       --------->ANAC58     <-------MYC3              <---------ICU4            --------->TOE1(3) -ATHB12       --------->ANAC58    --------->ANAC46      --------->TOE2(3)        ------>ZmHOX2a(1)   cccaaacgtaaatagccaagcccaagcatatttatccacgttcccaaacaatccctaaacctcatcatcatcatctccaaactcctaaaaccctaacaag  18267000                                                                                                 <---                                                                                                -----                                                                                        <----------DOF2                               --------->YAB1                                          <---------DAG2                               <---------ICU4                                         <------NtERF2                               <--------HAHB4                                        <---------RAP2.6(3)                              --------->ICU4                                         ------>NtERF2                   ------>ZmHOX2a(1)<-----------GT1            <-----------GT1      --------->RAP2.6(2)     <---------CCA1(2)        <---------ATHB12           <---------ICU4             --------->DEAR3(1)   <---------CCA1(2)   ---------->DOF2             --------->TOE2(3)                --------->RAP2.3(3)  <---------MYB52(1) ----------->HVH21           <---------ARR11(3)                 --------->RAP2.3(2) --->ANAC58        <---------At4g35610           --------->GLK1(2)                 --------->RAP2.3(1) --->ANAC58        --------->At4g35610           --------->ARR11(3)            ---------->DOF2<------   aacccttatctctctcatttcctctgaaaggaatcatttttccactcagaaaatctcaaacatttcaaccatgtcgatttctaaagccgcctttttaaac  18267100                                                                                                 <---                                                                                                <----                                                                                                -----                                 --------->ZAT14                                               ------                             <------NtERF2                                                     ------                            ------>NtERF2                                                     -------                           --------->DEAR3(1)                                                 <------NtERF2                         ------>NtERF2                                                        -------                        --------->ANAC46                                                      -------                        --------->RAP2.6(2)                                                  <-------                        ------->GAMYB       ------>NtERF2                                    <-------                       --------->DEAR3(2)  --------->DEAR3(1)                                <-------                       --------->MYB46(3)  --------->RRTF1(3)                                ------>NtERF2                      ------>MYB46(1)     <------NtERF2                                     ---------                      ------>MYB83        --------->ATERF1(1)                               ---------                      --------->SPL7      --------->RAP2.3(1)                               ---------                      -------->P <---------ZAT14     --------->ANAC46                       ---------                   ------>ZmHOX2a(2)      --------->ERF1   --------->SPL7                   <--------                  <------ZmHOX2a(2)      --------->At4g35610                               --------->RAP2.3(1)                 <---------ARR11(3)      <---------At4g35610        <-----------HVH21      --------->ATERF1(1)                 --------->ARR14(3)      ------>NtERF2   <---------SPL7                    --------->ERF1                 <---------ARR14(2)      <---------ATERF1(1)       --------->ANAC46        --------->DEAR3(2)                 --------->ARR11(3)  <-----------RAV1(1) <-----------HVH21                <---------ATERF1(1)       --------->ZAT6------>ZmHOX2a(1)   --------->LBD16 --------->ORA47(1)               --------->At4g35610 ------ALFIN1    <---------ARR14(3)<---------At4g35610   ------>NtERF2              <------ZmHOX2a(1) ---->MYB46(3)   --------->ARR14(2)--------->At4g35610  --------->DEAR3(1)       <-----------RAV1(2) -----GT1    --------->YAB1<---------ALFIN1--------->RAP2.3(3)  <-------TEIL     <---------LBD16-----   caccttcaaacactatcaagatcctaccgccaccgtgttctgccgcagccatttctcgccgtccgatacatgtcattcgcgactcaggaagaagccgccg  18267200         ------>NtERF2       --------->RAP2.3(1)       --------->ATERF1(1)       <------NtERF2      <---------ATERF1(1)      ------>NtERF2      <---------RAP2.3(1)     <---------DEAR3(1)     --------->DEAR3(1) ------->TEIL -------CDC5 -----At4g35610                                                     --------->REM1(1) ->NtERF2<-----------HVH21                                          --------->MYB46(3) --->DEAR3(1)                                                     ----------->RAV1(1) --->RAP2.3(2)                                                  --------->At4g35610 -->DEAR4(2)                                                    <---------At4g35610 -->RAP2.3(1)                           ----------->GT1        --------->ANAC46 -->ATERF1(1)                         <------NtERF2        <------ZmHOX2a(2) --ATERF1(1)                         --------->MYB52(1)    <---------GLK1(1) --DEAR4(2)                          ------>NtERF2         --------->GLK1(1) --RAP2.3(1)                        <---------ALFIN1      --------->ARR11(3) >RAP2.6(2)                         --------->DEAR3(1)    <---------AGP1 >RAP2.3(2)                        --------->ATERF1(1)    <-----------ARR10--------->TOE2(3) >ANAC46--------->DEAR3(1)         --------->MYB46(3)     --------->ARR14(2) >DEAR3(1)  <---------SPL7         <---------ABI4(2)      <---------ARR11(3) -DEAR3(1)<------NtERF2           <---------ATERF1(1)     <---------ARR14(2) ---->At4g35610            <---------SPL7 <---------MYB52(1)------>ZmHOX2a(2)             --------->AtMYB61   ctgaacgtcgccgtcgtaagcgtcgtcttcgtatggagccaccggttaattcattcaacagatctcagcaacaacaatctcaaatccctcgaccaattca  18267300                        --------->ARR14(2)                            --------->ARR14(2)                        <---------ARR14(2)                            <---------ARR14(2)                        --------->GLK1(2)                             --------->ARR11(3)                        ------->TEIL                                 <---------CCA1(2)                       <---------GLK1(2)                        <---------ICU4                    --------->TOE2(3)                           --------->YAB1                 <-----------GT1                             --------->YAB1            --------->LBD16                               =======================HOX2a_HOX2a           --------->LBD16                                ------>ZmHOX2a(2)           --------->ANAC46                             --------->ARR14(2)          <---------HSFB2a(2)     --------->ZAT14       --------->ARR11(3)------>ZmHOX2a(1)   -------          --------->HSFB2a(2)     <---------At4g35610   <---------ARR14(2)=================HOX2a_HOX2a       --------->ARR11(3)         --------->At4g35610   <---------ARR11(3)--------->LBD16    -------- --------->TOE1(3) ----------->RAV1(2)          <---------HSFC1(2) --------->YAB1     --------->LBD16 --------->TOE2(3) <---------ANAC55(2)          --------->HSFC1(2) <---------ICU4   ------>ZmHOX2a(2)   aaaccctaatatcccgaaattacctgaatctgtctctgctctcgttgggaaacgtctcgatcttcataatcatatcctgaaattgatccgagagaatgat  18267400                                                                                               ------                                                                                           --------->HSFB2a(2)                                                                                           <---------HSFB2a(2)                                                                                      <---------At4g35610                                                                                      <---------HSFC1(2)                                                                                      --------->At4g35610                                                                                      --------->HSFB2a(1)                                                                                      --------->ZAT2                                                                                      <---------HSFB2a(1)                                                                                      --------->HSFC1(2)                      <-----------HVH21                                             <------NtERF2                     --------->ANAC58                                              --------->ABI4(2)                     --------->ANAC46                                              ------>NtERF2                     --------->bZIP60(2)                                         --------->RAP2.3(1)                     --------->ANAC58                                            --------->ATERF1(1)                     --------->TGA1a                                             <------NtERF2 ------                     --------->O2                  <---------TOE1(2)             --------->RRTF1(1)                <---------ZAT18                 --------->SPL7                  <---------RAP2.3(1)                --------->ZAT14               <---------RAP2.6(3)               <---------ORA47(2)                <---------ZAT14               <-----------HVH21                <---------RAP2.3(3)      <---------HSFC1(2)                      ------>NtERF2                    <---------RRTF1(3)      <---------At4g35610                     <---------SPL7                   <---------RAP2.3(2)      --------->HSFC1(2)                     <---------ANAC58                 <---------At4g35610      --------->At4g35610         <---------ARR14(2)                          --------->At4g35610     --------->GLK1(2)<-----------TGA1       <---------ANAC58      <---------ARR14(2) <---------ZAT2 -->ATHB12    --------->ZAT14     --------->ARR14(2)        <---------At5g28300<---------DEAR3(1) ->ICU4       <---------ZAT14<---------ANAC46--------->DEAR3(1)--------->At5g28300--------->DEAR3(1)   ttagaagaagctgctctgtacactcgtcactctgtgtattcgaattgccgtcccacgattttcactgtgaatactgttttagcggcgcagcttcgacaag  18267500  Previous    Next  AGI:  At3g49240.1    Description:  EMB1796 (EMBRYO DEFECTIVE 1796); binding. similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48651.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18266964    to: 18269085    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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