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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
<---------
AHL20(2)
<
--------->
GT1
--------->
AHL20(2)
<-
-------
AGL15
<-------
TEIL
<---------
AHL20(2)
----
------>
AGL15
--------->
AHL20(2)
<---------
AHL20(1)
<---------
MYB46(3)
<----
tttgtaaaaactgaatacccaaacaaaaaaatacatgaaatacaagtattttatttaaaatttagacctgttctcttattcgttggactaaatatacaat
18266600
----------->
GT1
--------->
ALFIN1
<---------------
AtSPL3
--------------->
AtSPL3
x
--------->
AHL20(2)
--------------->
AtSPL8
<---
<---------
AHL20(1)
<---------
ARR14(2)
<---
--------->
AHL20(2)
<---------
ICU4
<---------------
AtSPL8
--------->
CCA1(2)
--------->
AHL20(2)
----------->
GT1
--------->
AHL20(2)
--------->
ARR11(3)
----------->
GT1
--------->
MYB52(1)
<---------
AHL20(2)
--------->
ARR14(2)
---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
ARR11(3)
--------
YAB1
--------->
YAB1
----------->
GT1
<---------
LBD16
<---------
ARR14(2)
----->
YAB1
<---------
AHL20(2)
--------->
CCA1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<----
-----
ATHB51
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
REM1(1)
--------->
ARR11(1)
aataaatggataaattatttataaaataacagttataagatagaaaaaaaattactacggatgtggtacaacaaatttctcgttaagagagatatgggcc
18266700
<---------
ARR14(2)
<---------
ANAC46
--------->
LBD16
--------->
DEAR3(1)
--------->
ATERF1(1)
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
<---------
ALFIN1
--------->
DEAR3(1)
--------->
ARR14(2)
<---------
ABI4(2)
<------
NtERF2
<---------
RAP2.6(3)
<---------
ATERF1(1)
<------
NtERF2
------>
NtERF2
------>
NtERF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ARR14(2)
<---------
RAP2.6(3)
--------->
ATERF1(1)
--------->
DEAR3(1)
--------->
RAP2.6(2)
--------->
ZAT18
<---------
ATERF1(2)
--------->
LBD16
<---------
ZAT18
<---------
RAP2.6(2)
<---------
ATERF1(1)
<---------
ICU4
--------->
ATERF1(2)
<-----------
HVH21
--------->
ATHB12
--------->
ATERF1(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
TGA2(1)
-------
--------->
RAP2.6(3)
<---------
ATERF1(2)
--------->
bZIP60(1)
<-------
--------->
ALFIN1
--------->
ATERF1(2)
<---------
At4g35610
<---------
ZAT14
---
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ANAC55(2)
--------->
REM1(1)
<-------
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
CCA1(2)
<---------
ARR14(2)
<---------
bZIP60(1)
--------
------
DEAR3(2)
--------->
ANAC46
--------->
ANAC58
<-----------
GT1
<xxxxxxxxxxxx
------
SPL7
<---------
LBD16
--------->
ANAC58
<----------
DOF2
<---------
YAB1
<--------
-----
MYB46(3)
--------->
RAP2.6(3)
--------->
ANAC46
<----------
DOF2
--------->
ZAT14
<---
ggtcgaagtgccggcctctatagataagccggcaccgcgtatattacgcacaacgtattccgctctttttttgttacatcattgtgcagaatgcagattc
18266800
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
YAB1
--------->
YAB1
<---------
ICU4
--------->
ICU4
<---------
YAB1
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
---------->
DOF2
<---------
ICU4
---------->
DOF2
--------->
YAB1
--------->
MYB46(3)
<---------
YAB1
-->
GLK1(2)
<---------
AHL20(2)
--
GLK1(2)
--------->
AHL20(2)
--->
ZmHOX2a(1)
--------->
AHL20(2)
--
ARR14(2)
<---------
AHL20(1)
->
ARR14(2)
--------->
AHL20(1)
xxxx
smallRNA(i)
<---------
ARR11(3)
------>
ZmHOX2a(1)
--------
-
At4g35610
--------->
ARR11(3)
<---------
PCF2
<--------
------
MYB59
---------->
DOF2
--------->
AHL20(2)
<---------
ATHB12
---------->
DOF2
------------>
CBF
ctaaccaaagaaaaagaaagtttttaaaaatatttaattataattatatgatgaaatcaagaatgggtcctccaaaaatcgagcttatggcccaataaag
18266900
<-------
MYC2
------->
MYC2
--------->
At4g35610
------->
MYC3
--------->
YAB1
--------->
TOE2(3)
<-----------
GT1
<---------
ICU4
----------->
GT1
--------->
YAB1
<---------
YAB1
------
--------->
ANAC58
--------->
ANAC58
------------>
CBF
*
TSS
<---------
ICU4
------
--------->
ANAC58
--------->
ANAC58
<---------
ATHB12
--------->
YAB1
--------->
TOE2(3)
-->
DOF2
--------->
ANAC58
<-------
MYC3
<---------
ICU4
--------->
TOE1(3)
-
ATHB12
--------->
ANAC58
--------->
ANAC46
--------->
TOE2(3)
------>
ZmHOX2a(1)
cccaaacgtaaatagccaagcccaagcatatttatccacgttcccaaacaatccctaaacctc
atcatcatcatctccaaactcctaaaaccctaacaag
18267000
<---
-----
<----------
DOF2
--------->
YAB1
<---------
DAG2
<---------
ICU4
<------
NtERF2
<--------
HAHB4
<---------
RAP2.6(3)
--------->
ICU4
------>
NtERF2
------>
ZmHOX2a(1)
<-----------
GT1
<-----------
GT1
--------->
RAP2.6(2)
<---------
CCA1(2)
<---------
ATHB12
<---------
ICU4
--------->
DEAR3(1)
<---------
CCA1(2)
---------->
DOF2
--------->
TOE2(3)
--------->
RAP2.3(3)
<---------
MYB52(1)
----------->
HVH21
<---------
ARR11(3)
--------->
RAP2.3(2)
--->
ANAC58
<---------
At4g35610
--------->
GLK1(2)
--------->
RAP2.3(1)
--->
ANAC58
--------->
At4g35610
--------->
ARR11(3)
---------->
DOF2
<------
aacccttatctctctcatttcctctgaaaggaatcatttttccactcagaaaatctcaaacatttcaacc
atgtcgatttctaaagccgcctttttaaac
18267100
<---
<----
-----
--------->
ZAT14
------
<------
NtERF2
------
------>
NtERF2
-------
--------->
DEAR3(1)
<------
NtERF2
------>
NtERF2
-------
--------->
ANAC46
-------
--------->
RAP2.6(2)
<-------
------->
GAMYB
------>
NtERF2
<-------
--------->
DEAR3(2)
--------->
DEAR3(1)
<-------
--------->
MYB46(3)
--------->
RRTF1(3)
------>
NtERF2
------>
MYB46(1)
<------
NtERF2
---------
------>
MYB83
--------->
ATERF1(1)
---------
--------->
SPL7
--------->
RAP2.3(1)
---------
-------->
P
<---------
ZAT14
--------->
ANAC46
---------
------>
ZmHOX2a(2)
--------->
ERF1
--------->
SPL7
<--------
<------
ZmHOX2a(2)
--------->
At4g35610
--------->
RAP2.3(1)
<---------
ARR11(3)
<---------
At4g35610
<-----------
HVH21
--------->
ATERF1(1)
--------->
ARR14(3)
------>
NtERF2
<---------
SPL7
--------->
ERF1
<---------
ARR14(2)
<---------
ATERF1(1)
--------->
ANAC46
--------->
DEAR3(2)
--------->
ARR11(3)
<-----------
RAV1(1)
<-----------
HVH21
<---------
ATERF1(1)
--------->
ZAT6
------>
ZmHOX2a(1)
--------->
LBD16
--------->
ORA47(1)
--------->
At4g35610
------
ALFIN1
<---------
ARR14(3)
<---------
At4g35610
------>
NtERF2
<------
ZmHOX2a(1)
---->
MYB46(3)
--------->
ARR14(2)
--------->
At4g35610
--------->
DEAR3(1)
<-----------
RAV1(2)
-----
GT1
--------->
YAB1
<---------
ALFIN1
--------->
RAP2.3(3)
<-------
TEIL
<---------
LBD16
-----
caccttcaaacactatcaagatcctaccgccaccgtgttctgccgcagccatttctcgccgtccgatacatgtcattcgcgactcaggaagaagccgccg
18267200
------>
NtERF2
--------->
RAP2.3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
<---------
RAP2.3(1)
<---------
DEAR3(1)
--------->
DEAR3(1)
------->
TEIL
-------
CDC5
-----
At4g35610
--------->
REM1(1)
->
NtERF2
<-----------
HVH21
--------->
MYB46(3)
--->
DEAR3(1)
----------->
RAV1(1)
--->
RAP2.3(2)
--------->
At4g35610
-->
DEAR4(2)
<---------
At4g35610
-->
RAP2.3(1)
----------->
GT1
--------->
ANAC46
-->
ATERF1(1)
<------
NtERF2
<------
ZmHOX2a(2)
--
ATERF1(1)
--------->
MYB52(1)
<---------
GLK1(1)
--
DEAR4(2)
------>
NtERF2
--------->
GLK1(1)
--
RAP2.3(1)
<---------
ALFIN1
--------->
ARR11(3)
>
RAP2.6(2)
--------->
DEAR3(1)
<---------
AGP1
>
RAP2.3(2)
--------->
ATERF1(1)
<-----------
ARR10
--------->
TOE2(3)
>
ANAC46
--------->
DEAR3(1)
--------->
MYB46(3)
--------->
ARR14(2)
>
DEAR3(1)
<---------
SPL7
<---------
ABI4(2)
<---------
ARR11(3)
-
DEAR3(1)
<------
NtERF2
<---------
ATERF1(1)
<---------
ARR14(2)
---->
At4g35610
<---------
SPL7
<---------
MYB52(1)
------>
ZmHOX2a(2)
--------->
AtMYB61
ctgaacgtcgccgtcgtaagcgtcgtcttcgtatggagccaccggttaattcattcaacagatctcagcaacaacaatctcaaatccctcgaccaattca
18267300
--------->
ARR14(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR14(2)
--------->
GLK1(2)
--------->
ARR11(3)
------->
TEIL
<---------
CCA1(2)
<---------
GLK1(2)
<---------
ICU4
--------->
TOE2(3)
--------->
YAB1
<-----------
GT1
--------->
YAB1
--------->
LBD16
=======================
HOX2a_HOX2a
--------->
LBD16
------>
ZmHOX2a(2)
--------->
ANAC46
--------->
ARR14(2)
<---------
HSFB2a(2)
--------->
ZAT14
--------->
ARR11(3)
------>
ZmHOX2a(1)
-------
--------->
HSFB2a(2)
<---------
At4g35610
<---------
ARR14(2)
=================
HOX2a_HOX2a
--------->
ARR11(3)
--------->
At4g35610
<---------
ARR11(3)
--------->
LBD16
--------
--------->
TOE1(3)
----------->
RAV1(2)
<---------
HSFC1(2)
--------->
YAB1
--------->
LBD16
--------->
TOE2(3)
<---------
ANAC55(2)
--------->
HSFC1(2)
<---------
ICU4
------>
ZmHOX2a(2)
aaaccctaatatcccgaaattacctgaatctgtctctgctctcgttgggaaacgtctcgatcttcataatcatatcctgaaattgatccgagagaatgat
18267400
------
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
At4g35610
<---------
HSFC1(2)
--------->
At4g35610
--------->
HSFB2a(1)
--------->
ZAT2
<---------
HSFB2a(1)
--------->
HSFC1(2)
<-----------
HVH21
<------
NtERF2
--------->
ANAC58
--------->
ABI4(2)
--------->
ANAC46
------>
NtERF2
--------->
bZIP60(2)
--------->
RAP2.3(1)
--------->
ANAC58
--------->
ATERF1(1)
--------->
TGA1a
<------
NtERF2
------
--------->
O2
<---------
TOE1(2)
--------->
RRTF1(1)
<---------
ZAT18
--------->
SPL7
<---------
RAP2.3(1)
--------->
ZAT14
<---------
RAP2.6(3)
<---------
ORA47(2)
<---------
ZAT14
<-----------
HVH21
<---------
RAP2.3(3)
<---------
HSFC1(2)
------>
NtERF2
<---------
RRTF1(3)
<---------
At4g35610
<---------
SPL7
<---------
RAP2.3(2)
--------->
HSFC1(2)
<---------
ANAC58
<---------
At4g35610
--------->
At4g35610
<---------
ARR14(2)
--------->
At4g35610
--------->
GLK1(2)
<-----------
TGA1
<---------
ANAC58
<---------
ARR14(2)
<---------
ZAT2
-->
ATHB12
--------->
ZAT14
--------->
ARR14(2)
<---------
At5g28300
<---------
DEAR3(1)
->
ICU4
<---------
ZAT14
<---------
ANAC46
--------->
DEAR3(1)
--------->
At5g28300
--------->
DEAR3(1)
ttagaagaagctgctctgtacactcgtcactctgtgtattcgaattgccgtcccacgattttcactgtgaatactgttttagcggcgcagcttcgacaag
18267500
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AGI:
At3g49240.1
Description:
EMB1796 (EMBRYO DEFECTIVE 1796); binding. similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48651.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:
from: 18266964
to: 18269085
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.