Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ARR11(3)           <---------ARR14(2)           <---------ARR11(3)                                                                      <-         ----------->ARR10                                                                        <--       --------->REM1(2)                   --------->AtLEC2                                   <------    <---------ANAC58            <---------GLK1(1)                                            <-------    <---------ANAC46            --------->GLK1(1)                                            <-------    <---------ANAC58          --------->ATHB12              <---------At4g35610              --------   <-------TEIL      <-------TEIL        <---------ANAC58   --------->At4g35610              -------- ------->DAG2       --------->CCA1(2)    <---------ANAC58   <---------ZAT2   <---------ZAT6  <------- ------->DOF2    <---------TOE2(3)       <---------ANAC46---------->DOF2<----------DOF2      --------   aaaagttcgtgtagatattgagattcgactattgatttccattccttgcaaaccaaggtgaaagctgtgatgctctttagtggtaatctcgctaatatat  10530100         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       <---------ARR14(2)       <---------ARR14(3)       --------->ARR14(2)       --------->AGP1       --------->ARR14(3)       --------->ARR11(3)       <---------ARR11(3)   --------->ANAC46 --------At5g28300 ---------GT1 ---AHL20(2)                                                 --------->MYB59 --AHL20(2)                                                  <---------TOE1(3) <------MYB83 --ARR11(3)                                                  <---------TOE2(3) <------MYB46(1) ->ARR11(3)     <---------ZAT14               ------>ZmHOX2a(1)       <---------ARR14(2) ->AHL20(1)     --------->REM1(2)           ----------->RAV1(2)       --------->ARR14(2) --AHL20(1)     --------->ZAT14     <<<<<<<<<TBF1       --------->ATHB12------>ZmHOX2a(2) ->AHL20(2)  <---------ANAC46    <<<<<<<<<TBF1=================================HOX2a_HOX2a   ttaccacgagatcttctgtgtagtaatctatcttcttcttcttcgttcctgactccattgatttaggttttagatcgggctaggtttactctgtttcaga  10530200                                                           <---------ANAC58                                                           <---------ANAC58                                                --------->ETT(1)                                               --------->RAP2.6(3)                                 --------->AHL20(1)     <---------GLK1(2)        --------->TOE1(3)        <---------AHL20(1)     <---------ARR14(2)       --------->ZAT6            --------->AHL20(2)     --------->ARR14(2)      -------->P                 <---------AHL20(2)  --------->ANAC58   <---------MYB46(2)           <---------AHL20(2)   --------->ANAC58   <---------MYB52(2)           --------->AHL20(2)<------NtERF2              <-----------GT1   --------->MYB46(3)--------->ARR11(3)        <<<<<<<<<<DREB2A        ----------->GT1   <---------MYB111(1)--------->CCA1(2)        <<<<<<<<<<DREB1A     ---------->DOF2                 - --------->MYB52(1)  <---------ARR11(3)        --------->DDF1  ----------->HVH21        ---------->DOF2   gactaactaaccctaagaatatagatatatacaaataaatttgtttcatgtcggcaaggattcttgtgacaaaaggaaataactcttcggtaaagaacta  10530300                                                           --------->YAB1                                                           -------->HAHB4              --------->AHL20(2)                                                           <---------ICU4          <---------AHL20(1)                                                          --------->ICU4           --------->AHL20(2)                                                          <---------ATHB51         --------->AHL20(1)                                    ---------->DOF2       <---------YAB1           <---------AHL20(2)                              <-------TEIL           --------->ANAC55(2)          <---------ATHB12                        ---------->DOF2            <-----------GT1 <----------DOF2--------->AHL20(2)                       <---------WRKY12 --------->ALFIN1--------->YAB1        ------------>CBF------- ---------->GT1        <---------WRKY38(1)         <---------AHL20(2)       ---------->ID1   <-------   aatggaaaaatagaagacgaatgagtcaaaggctcattaaaagttgggcttatttacataataatgggcctttctcttggcccaataaatttaaaaccca  10530400                                                                                   <---------ALFIN1                                                                                --------->ANAC46                                    ------>ZmHOX2a(1)             <---------ARR11(3) --------->ANAC46        <----------DOF2             <---------YAB1     ------>NtERF2------>ZmHOX2a(2)--------->ANAC58 <---------TOE1(3)       <---------ANAC58             --------->ANAC46          --------->ANAC58 <---------TOE2(3)       <---------ANAC46             --------->DEAR3(1)        --------->ANAC58 ----->CBF               <---------ANAC58           *TSS          --------->ARR11(3) --------->ANAC58 ----------AG      <---------AHL20(2)     ----------->GT1 <----------DOF2<---------REM1(2)  ---------   attagggtttcttttttgtttttattttcgtatgagtccttatagggttttaatcgacgcctttcttcgatcttcttcacagacgacacaccattgataa  10530500                                                                                                   --                                                                                               ------                                                                                               ------                                                                                               ------                                                 --------->YAB1                             <--------                                    <---------ZAT2                                          <--------                                    <---------At4g35610                                <------ZmHOX2a(1)                                    --------->At4g35610                               <----------ID1-                                 ------>ZmHOX2a(2)                       ---------->DOF2    ---------                      --------->MYB52(1)  <---------WRKY38(1)--------->ANAC58      ---------->DOF2 -- >YAB1              <---------MYB59 --------->ZAT2           --------->ANAC58 ----------->GT1--------   atctccatcgtagaaagttttatctaactgtttgatcgagctgatcaacgatgaaaattgacaacgctagagaagaaaagaagaaaaaaggacagaaacg  10530600      ----------->GT1      --------->At4g35610    <-----------RAV1(2)  ----------->RAV1(1) ------->ANAC58 --->ANAC58 --->ANAC46 --->ANAC58 -GLK1(2)                                    <---------ARR11(3) -ARR14(2)                             --------------->AtSPL8                       <---------YAB1 -------->MYB46(3)                     <---------------AtSPL8            <---------YAB1 >ARR14(2)               ------>ZmHOX2a(1)   --------->ARR11(3)       <---------ATHB51          ----- ------->ANAC58       ---------->ID1 --------->STY1(2)    <---------AHL20(2)    <----------DOF2------ -->DOF2     --------->YAB1          <---------STY1(2)   --------->AHL20(2) <----------DOF2   <------   caagcaccaggtgaattagaattcgtcctcttacttactagctagtacatcttcttcgtttaaattgaacaaattatgctttctttgttatagcagaatg  10530700                             --------->At4g35610                                               ------      <---------ARR14(2)     <---------ZAT2                                                    ------  <---------ZAT2             <---------At4g35610     --------->ANAC58                          ------  <---------At4g35610        --------->ZAT2          --------->ANAC58              ---------->DOF2 ---->YAB1      ----------->GT1     --------->HSFB2a(2)                         --------->At4g35610 --->ICU4       --------->TOE2(3)   <---------HSFB2a(2)   <---------ATHB12      <---------At4g35610 ---KAN4(2)    ----------->GT1  --------->At4g35610  --------->ANAC46    ---------->DOF2     --------   atcaagctgatatggaaatgttaaaacttcgagctgctctagagggaaaacatagaagcaatggttctactgttttaaagtctgctaaagctcaaaaacg  10530800                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--       --------->At4g35610                                         ------>NtERF2                -----     --------->YAB1                                             --------->At4g35610       --------->At5g28300  <---------GLK1(1)                                             --------->ZAT2           ----------->GT1  --------->GLK1(1)                                             <---------At4g35610     <---------TOE1(3) --->ANAC58                 <-----------GT1                   --------->DAG2      =================== --->ANAC46             ------->TEIL                         ---------->DOF2      <---------------AGL15 --->ANAC58     <---------At4g35610                    --------->At4g35610    --------->GLK1(1)<----- -->DOF2      <-----------RAV1(2)   ----------->GT1    ----------->GT1---------->DOF2   <---------TOE2(3)   ccagaaatcagaagactcagaagatgaattttacagacaagtgaaacagaaacaagaagctaaaaaagctgccaaagcagaaatctattcaaggtaaata  10530900         <<<<<<<<<ARR1         <<<<<<<<<ARR2    <-----------GT1  --------->YAB1                                                         <------ZmHOX2a(1)  -------->HAHB4                                                         ======================HOX2a_HOX2a <---------YAB1                                                          ============================ --------ICU4         <----------DOF2                                  <---------TOE2(3)            - ------->YAB1        --------->TOE2(3)                            <------MYB46(1)          <--------- ------>ICU4         --------->TOE1(3)                            <---------MYB46(3)       <--------- -------YAB1        --------------->AGL15                   <---------ANAC46              --------->ANAC55(2) ---->YAB1          <---------------AGL15  --------->At4g35610    <------MYB83            --------->ANAC46 ===================================MADS_MADS     --------->YAB1 <---------AtMYB61        <---------ANAC55(2) ----AHL20(2)  --------->TOE2(3)           <---------At4g35610<-----------RAV1(1)       ------>ZmHOX2a(2)   ataataatacaatcttacattaacctttatagtataacattgttcatctcaatgagaacgttttgtgttggtttaggaaaccatatttgatcccgtcatc  10531000  Previous    Next  AGI:  At3g28223.1    Description:  similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G28330.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 10528714    to: 10530158    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g28230.1    Description:  similar to EMB2777 (EMBRYO DEFECTIVE 2777) [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to Integrase core domain containing protein [Solanum demissum] (GB:ABI34329.1); contains InterPro domain Small-subunit processome, Utp3; (InterPro:IPR007146) Range:  from: 10530452    to: 10531436    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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