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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ARR11(3)
<---------
ARR14(2)
<---------
ARR11(3)
<-
----------->
ARR10
<--
--------->
REM1(2)
--------->
AtLEC2
<------
<---------
ANAC58
<---------
GLK1(1)
<-------
<---------
ANAC46
--------->
GLK1(1)
--------
<---------
ANAC58
--------->
ATHB12
<---------
At4g35610
--------
<-------
TEIL
<-------
TEIL
<---------
ANAC58
--------->
At4g35610
--------
------->
DAG2
--------->
CCA1(2)
<---------
ANAC58
<---------
ZAT2
<---------
ZAT6
<-------
------->
DOF2
<---------
TOE2(3)
<---------
ANAC46
---------->
DOF2
<----------
DOF2
<-------
aaaagttcgtgtagatattgagattcgactattgatttccattccttgcaaaccaaggtgaaagctgtgatgctctttagtggtaatctcgctaatatat
10530100
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
AGP1
<---------
ARR14(3)
--------->
ARR14(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ANAC46
--------
At5g28300
---------
GT1
---
AHL20(2)
--------->
MYB59
--
AHL20(1)
<---------
TOE1(3)
<------
MYB46(1)
->
AHL20(2)
<---------
TOE2(3)
<------
MYB83
->
AHL20(1)
--------->
REM1(2)
------>
ZmHOX2a(1)
--------->
ARR14(2)
->
ARR11(3)
<---------
ZAT14
----------->
RAV1(2)
<---------
ARR14(2)
--
AHL20(2)
--------->
ZAT14
<<<<<<<<<
TBF1
--------->
ATHB12
------>
ZmHOX2a(2)
--
ARR11(3)
<---------
ANAC46
<<<<<<<<<
TBF1
=================================
HOX2a_HOX2a
ttaccacgagatcttctgtgtagtaatctatcttcttcttcttcgttcctgactccat
tgatttaggttttagatcgggctaggtttactctgtttcaga
10530200
<---------
ANAC58
<---------
ANAC58
--------->
ETT(1)
<<<<<<<<<<
DREB2A
--------->
AHL20(1)
<---------
GLK1(2)
--------->
TOE1(3)
<---------
AHL20(1)
<---------
ARR14(2)
--------->
ZAT6
--------->
AHL20(2)
--------->
ARR14(2)
-------->
P
<---------
AHL20(2)
--------->
ANAC58
<---------
MYB46(2)
<---------
AHL20(2)
--------->
ANAC58
<---------
MYB52(2)
--------->
AHL20(2)
<------
NtERF2
<-----------
GT1
--------->
MYB46(3)
--------->
ARR11(3)
<<<<<<<<<<
DREB1A
----------->
GT1
<---------
MYB111(1)
--------->
CCA1(2)
--------->
RAP2.6(3)
---------->
DOF2
-
--------->
MYB52(1)
<---------
ARR11(3)
--------->
DDF1
----------->
HVH21
---------->
DOF2
gactaactaaccctaagaatatagatatatacaaataaatttgtttcatgtcggcaaggattcttgtgacaaaaggaaataactcttcggtaaagaacta
10530300
<---------
ICU4
--------->
YAB1
--------->
AHL20(2)
-------->
HAHB4
<---------
AHL20(1)
<---------
YAB1
--------->
AHL20(2)
<---------
ATHB51
--------->
AHL20(1)
---------->
DOF2
--------->
ICU4
<---------
AHL20(2)
<-------
TEIL
--------->
ANAC55(2)
<---------
ATHB12
---------->
DOF2
<---------
AHL20(2)
------------>
CBF
-------
<---------
WRKY12
--------->
ALFIN1
--------->
YAB1
---------->
ID1
<-------
---------->
GT1
<---------
WRKY38(1)
<-----------
GT1
<----------
DOF2
--------->
AHL20(2)
aatggaaaaatagaagacgaatgagtcaaaggctcattaaaagttgggcttatttacataataatgggcctttctcttggcccaataaatttaaaaccca
10530400
<---------
ALFIN1
--------->
ANAC58
------>
ZmHOX2a(1)
<---------
ARR11(3)
--------->
ANAC46
<----------
DOF2
<---------
YAB1
------>
NtERF2
------>
ZmHOX2a(2)
--------->
ANAC58
<---------
TOE1(3)
<---------
ANAC58
--------->
DEAR3(1)
--------->
ANAC58
<---------
TOE2(3)
<---------
ANAC46
--------->
ANAC46
--------->
ANAC46
----->
CBF
<---------
ANAC58
*
TSS
--------->
ARR11(3)
--------->
ANAC58
----------
AG
<---------
AHL20(2)
----------->
GT1
<----------
DOF2
<---------
REM1(2)
---------
attagggtttcttttttgtttttattttcgtatgagtccttatagggtttt
aatcgacgcctttcttcgatcttcttcacagacgacacaccattgataa
10530500
--
------
------
------
--------->
YAB1
<--------
--------->
ZAT2
<--------
--------->
At4g35610
<------
ZmHOX2a(1)
<---------
At4g35610
<----------
ID1
-
------>
ZmHOX2a(2)
---------->
DOF2
---------
--------->
MYB52(1)
<---------
WRKY38(1)
--------->
ANAC58
---------->
DOF2
--
>
YAB1
<---------
MYB59
<---------
ZAT2
--------->
ANAC58
----------->
GT1
--------
atctccatcgtagaaagttttatctaactgtttgatcgagctgatcaacg
atgaaaattgacaacgctagagaagaaaagaagaaaaaaggacagaaacg
10530600
--------->
At4g35610
----------->
GT1
<-----------
RAV1(2)
----------->
RAV1(1)
------->
ANAC58
--->
ANAC58
--->
ANAC58
--->
ANAC46
-
ARR14(2)
<---------
ARR11(3)
-
GLK1(2)
<---------------
AtSPL8
<---------
YAB1
-------->
MYB46(3)
--------------->
AtSPL8
<---------
YAB1
>
ARR14(2)
------>
ZmHOX2a(1)
--------->
ARR11(3)
<---------
ATHB51
-----
------->
ANAC58
---------->
ID1
--------->
STY1(2)
<---------
AHL20(2)
<----------
DOF2
------
-->
DOF2
--------->
YAB1
<---------
STY1(2)
--------->
AHL20(2)
<----------
DOF2
<------
caagcaccag
gtgaattagaattcgtcctcttacttactagctagtacatcttcttcgtttaaattgaacaaattatgctttctttgttatagcag
aatg
10530700
<---------
At4g35610
------
<---------
ARR14(2)
--------->
At4g35610
------
<---------
At4g35610
<---------
ZAT2
--------->
ANAC46
------
<---------
ZAT2
--------->
ZAT2
--------->
ANAC58
---------->
DOF2
---->
YAB1
----------->
GT1
<---------
HSFB2a(2)
<---------
At4g35610
--->
ICU4
--------->
TOE2(3)
--------->
HSFB2a(2)
<---------
ATHB12
--------->
At4g35610
---
KAN4(2)
----------->
GT1
--------->
At4g35610
--------->
ANAC58
---------->
DOF2
--------
atcaagctgatatggaaatgttaaaacttcgagctgctctagagggaaaacatagaagcaatggttctactgttttaaagtctgctaaagctcaaaaacg
10530800
--
<-
---
<--
--------->
At4g35610
------>
NtERF2
-----
--------->
YAB1
--------->
At4g35610
--------->
At5g28300
<---------
GLK1(1)
--------->
ZAT2
----------->
GT1
--------->
GLK1(1)
<---------
At4g35610
<---------
TOE2(3)
--->
ANAC58
<-----------
GT1
--------->
DAG2
===================
--->
ANAC46
------->
TEIL
---------->
DOF2
<---------------
AGL15
--->
ANAC58
<---------
At4g35610
----------->
GT1
---------->
DOF2
<---------
TOE1(3)
-->
DOF2
<-----------
RAV1(2)
----------->
GT1
--------->
At4g35610
--------->
GLK1(1)
<-----
ccagaaatcagaagactcagaagatgaattttacagacaagtgaaacagaaacaagaagctaaaaaagctgccaaagcagaaatctattcaag
gtaaata
10530900
<<<<<<<<<
ARR2
<<<<<<<<<
ARR1
<-----------
GT1
-------->
HAHB4
<------
ZmHOX2a(1)
--------->
YAB1
======================
HOX2a_HOX2a
<---------
YAB1
============================
------->
YAB1
<----------
DOF2
<---------
TOE2(3)
-
--------
ICU4
--------->
TOE2(3)
<------
MYB46(1)
<---------
------>
ICU4
--------->
TOE1(3)
<------
MYB83
<---------
-------
YAB1
<---------------
AGL15
<---------
ANAC46
--------->
ANAC55(2)
---->
YAB1
--------------->
AGL15
<---------
At4g35610
<---------
MYB46(3)
--------->
ANAC46
===================================
MADS_MADS
--------->
YAB1
<---------
AtMYB61
<---------
ANAC55(2)
----
AHL20(2)
--------->
TOE2(3)
--------->
At4g35610
<-----------
RAV1(1)
------>
ZmHOX2a(2)
ataataatacaatcttacattaacctttatagtataacattgttcatctcaatgagaacgttttgtgttggtttag
gaaaccatatttgatcccgtcatc
10531000
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AGI:
At3g28223.1
Description:
similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G28330.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527)
Range:
from: 10528714
to: 10530158
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g28230.1
Description:
similar to EMB2777 (EMBRYO DEFECTIVE 2777) [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to Integrase core domain containing protein [Solanum demissum] (GB:ABI34329.1); contains InterPro domain Small-subunit processome, Utp3; (InterPro:IPR007146)
Range:
from: 10530452
to: 10531436
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.