Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------DAG2                                              <----------DOF2                                       <---------TOE1(2)                                         ----                                   ------>ZmHOX2a(1)                     ------>ZmHOX2a(1)    -------                                ====================================HOX2a_HOX2a  --------->GLK1(1) --------At4g35610              <------ZmHOX2a(2)  <-----------GT1      <---------ANAC58     -------- ->RAP2.6(3)                   <---------ARR14(2)  ---------->ID1       <---------ANAC58   --------->MYB52(1) >ARR14(2)                     --------->ARR14(2) <-----------GT1       --------->TOE2(3) --------->MYB46(3) >MYB52(1)              --------->ANAC58  <---------ARR14(2)        <---------GLK1(2)   ----------->RAV1(1) -ARR14(2)              --------->ANAC58  --------->ARR14(2) ------>ZmHOX2a(1)   <---------GLK1(1) <-   catcttcttagctatattactcagaccagcatcgatcctcgctggatacttttttccctcttcctcactagattccttatcggaattctccaacaacggc  5812300                                                                   ------>NtERF2                                                                   <------NtERF2                                                                  --------->LBD16                                                                  <---------RAP2.3(1)                                                                 <---------RAP2.6(2)                                                                 <---------ANAC46                                                                 <---------RRTF1(2)                                                                 <---------RAP2.3(2)                                                          ----------------->AGL1                                                        --------->GLK1(2)                                                       <---------ARR14(2)                                                       <---------GLK1(2)                      -------                                                       --------->ARR14(2)                     <------                               <---------GLK1(2)      --------->At4g35610                   <--------                        --------->LBD16               <---------HSFB2a(1)     --------->At4g35610                       <---------ANAC58               --------->HSFB2a(1)     ----------->RAV1(2) ----->DEAR3(1)        <---------ANAC58    --------->ANAC58      <---------DEAR3(1)     <---------ARR11(3) >GAMYB                <---------ANAC46    --------->ANAC46     <---------LBD16         --------->ARR11(3) ->MYB46(3)          ------>ZmHOX2a(1)     --------->ANAC58 <----------DOF2   <---------At4g35610 --- -----NtERF2     <---------ALFIN1   ------>ZmHOX2a(1) <---------At4g35610  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)   cgtcgaactactaatactccctcctccgtgttagattcctctccctcgccattggcagattccttttgcggcgaaaatacacctgaagaagacctgtcga  5812400             <---------ANAC58                                  --------->GLK1(2)             <---------ANAC55(2)                             --------->HSFB2a(1)             <---------ANAC58                                --------->HSFC1(2)             <---------ANAC46                                <---------HSFB2a(1)             --------->ANAC55(2)                          --------->LBD16                        <---             <---------ANAC55(1)                        <---------LBD16                     <--------            <-------TEIL                              <---------WRKY18(1)                   <--------          <---------GLK1(2)                          ----------->HVH21                     <---------At1g77200 -->ETT(2)--------->ARR11(1)                         --------->WRKY38(1)            <---------GLK1(1) ---ETT(2)--------->ARR14(2)        <------ZmHOX2a(1)--------->WRKY12              --------->ARR14(2) ---HVH21 <---------ARR14(2)    --------->TOE1(2)   <---------WOX13(1)             <---------ARR14(2) --->NtERF2--------->CCA1(2) ---------->DOF2      --------->ATHB12     <---------GLK1(1)   <---------DEAR3(1)   cgactgcatacagatacgtgttcttagatgagaaagtaggatgactgagaaacgattgaccggagattccatgagttccgatgtggattttcgtcggtga  5812500       --------->GLK1(2)      <---------GLK1(2)                                               --------->At4g35610      --------->ARR14(2)                                            <------ZmHOX2a(1)    ----------->ARR10                                         <------NtERF2                      >>>> ------ANAC46          <------ZmHOX2a(1)                     <------NtERF2                  --------- -MYB46(3)    <------ZmHOX2a(1)                              --------->LBD16                --------- -DEAR3(2) <---------LBD16                                 <---------LBD16          <---------ARR14(2)   cttacagagattctcaggaatttgaggagtgagaaacgatagcgagaatgaagaagtattggccggagaaggagatgaagacgaagaattcggcacgaag  5812600                                                                                     <---------LBD16                                                                                    <---------LBD16    --------->ZAT18                                                                *TSS    <-------TEIL                               <---------DAG2                    <---------ZAT2    <---------ZAT14                            <----------DOF2                  <------NtERF2    --------->ZAT14                          <---------At4g35610              <---------ANAC58    --- >>>>>TBF1           <----------DOF2       <---------ZAT18     --------->CCA1(2)------>NtERF2    ---- >ANAC58        ---------->DOF2       <---------MYB52(1)   <------ZmHOX2a(1)  <---------ANAC58 ------ >ANAC58----------->GT1          <-----------GT1    <---------AtLEC2   --------->GLK1(2)    >>>>>>>>>TBF1   aagaagtgcattgtttaaaaaagctttaactgataaaaccgtttgtgagctttttcatggaggagagacggagaagctaggcgggctcggggaagaagaa  5812700                                                                               <------MYB83                                                                               <------MYB46(1)                                                                               ----------->GT1                                                                              --------->MYB59                                                                          --------->ATHB12                                                                        <XXXXXXXXXXXXXXXXXXXXMIR398A                                                                       <XXXXXXXXXXXXXXXXXXXXMIR398B/C               <---------TOE2(1)                                     <---------TOE2(3)          --------->DAG2                                          --------->DOF5.7(2)          <---------------AtSPL8                                 --------->TOE2(3)      --------->AtLEC2                                           --------->TOE1(3)      <---------YAB1 <-----------GT1      <----------DOF2       --------->ANAC55(2) ------>YAB1   <---------TOE1(1)        <---------At4g35610     <---------ANAC55(2) ----->ICU4 --------->TOE1(2)  <---------AHL20(2)   <------------CBF <---------TOE1(3)         ------ --->YAB1---------->DOF2      --------->YAB1      ------->TEIL  <---------ANAC46               <-----   tgatggtcatgaaaagtacgatgttacccttatattaatctcagcttttatgtatattgtaatgttacgttaagggtgatttggtaatacatcggagaat  5812800                                                                            <---------AHL20(1)                                                                            --------->ARR11(3)                                                                      ----------->GT1                                                                    <-------MYC2                                                                    ------->PIF5                   <---------O2                                     ------->MYC4                   <---------TGA1a                                  <-------MYC4                   --------->O2                                     <-------PIF5                   ==================bZIP_DOF                       ------->MYC2                   --------->bZIP60(2)                              <-------MYC3                   --------->TGA1a                                  ------->MYC3                 <---------ALFIN1                                  <---------O2              --------->ANAC46                                     --------->O2             --------->DEAR3(1)                                    <---------ANAC55(2)           --------->MYB52(1)                           <---------GLK1(1)   --------->AHL20(1)         --------->MYB46(3)                  --------->At4g35610   --------->ANAC55(2)     <---------ZAT18------->MYC3             <---------At4g35610   --------->TGA1a     --------->ZAT14<-------MYC3         <---------ANAC58          <---------TGA1a --->ARR14(2)================MYC_MYB<---------AtLEC2    --------->GLK1(1)   <---------ARR11(3) ----ARR14(2)------->GAMYB---------->DOF2<---------ANAC58     ----------->HVH21   acgactgtgcaataaccggccacgttgctaaagtttttggatggcttagctgaattggatttcagtgacacgtggtaatatcttattggtttgatgctct  5812900                                                                                          <---------AHL20(1)                                                                                          --------->AHL20(2)     --------->GLK1(2)                            --------->ATHB12                  <------MYB46(1)     <-----------ARR10                           --------->ICU4                     ----------->GT1<-    <---------GLK1(2)                            <---------YAB1                     <------MYB83 ----    <---------ARR14(2)                         <---------AtLEC2                   <--------P    <----   --------->HSFB2a(1)                     <------MYB83                  --------->YAB1   --------->AHL20(1)   <---------HSFB2a(1)                     <------MYB46(1)              <---------ATHB12  <---------AHL20(2)  ----------->ARR10         <---------GLK1(1) <-------TEIL<-------TEIL--------->WOX13(1) --------->AHL20(2)   gagggagattcttagccaaaaaatcagtagaactctggtatggataggtgcatgattaagttcgtagtcatccaatcacaagaggttggaaataaatttt  5813000 ---------DOF2                <-----------GT1 ----------->GT1 ------>ID1              --------->YAB1  <---------YAB1                               <---------TOE2(3) -------GT1             <---------YAB1<---------YAB1 ----------->GT1----------->RAV1(1)           <--   tctttttcttcaattttagtttagctataatttttctattgttatagttggaaaatagtaagaaaatttccaccagaagactgcatataacgatgaaaaa  5813100                                                                                  <------MYB46(1)                                                                                  <------MYB83                                                                                 --------->ALFIN1 <XX                                                 <------ZmHOX2a(1)             <---------ANAC58  <---          ----------->GT1                  <----------DOF2                     <---------ANAC46  <---      <---------ARR14(2)                  <---------ANAC46                     <---------ANAC58  ----   <---------------AGL15                  <---------ANAC58                    <------NtERF2      <---  <-----------------AGL1                  <---------ANAC58                  <---------RAP2.6(2)  <---  <-----------------AG              <----------DOF2                      <---------AtMYB61   <------- -------ICU4  <---------YAB1        <---------DAG2   ----------->GT1   <----------DOF2 ---------->DOF2   acatgacaaatatggtactattgaactatattagataactttttgcgtttaggaccagaaaaaaaacaccatgctttggtggcttggtgcaaagcctttg  5813200  Previous    Next  AGI:  At3g17040.1    Description:  HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding. similar to EMB2770/STA1 (STABILIZED1), RNA splicing factor, transesterification mechanism [Arabidopsis thaliana] (TAIR:AT4G03430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44911.1); similar to hypothetical protein OsI_010952 [Oryza sativa (indica cultivar-group)] (GB:EAY89719.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76674.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); Range:  from: 5809272    to: 5812683    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version