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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
DAG2
<----------
DOF2
<---------
TOE1(2)
----
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
-------
====================================
HOX2a_HOX2a
--------->
GLK1(1)
--------
At4g35610
<------
ZmHOX2a(2)
<-----------
GT1
<---------
ANAC58
--------
->
RAP2.6(3)
<---------
ARR14(2)
---------->
ID1
<---------
ANAC58
--------->
MYB52(1)
>
ARR14(2)
--------->
ARR14(2)
<-----------
GT1
--------->
TOE2(3)
--------->
MYB46(3)
>
MYB52(1)
--------->
ANAC58
<---------
ARR14(2)
<---------
GLK1(2)
----------->
RAV1(1)
-
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
------>
ZmHOX2a(1)
<---------
GLK1(1)
<-
catcttcttagctatattactcagaccagcatcgatcctcgctggatacttttttccctcttcctcactagattccttatcggaattctccaacaacggc
5812300
------>
NtERF2
<------
NtERF2
--------->
LBD16
<---------
RAP2.3(1)
<---------
RAP2.6(2)
<---------
ANAC46
<---------
RRTF1(2)
<---------
RAP2.3(2)
----------------->
AGL1
--------->
GLK1(2)
<---------
ARR14(2)
<---------
GLK1(2)
-------
--------->
ARR14(2)
<------
<---------
GLK1(2)
--------->
At4g35610
<--------
--------->
LBD16
<---------
HSFB2a(1)
--------->
At4g35610
<---------
ANAC58
--------->
HSFB2a(1)
----------->
RAV1(2)
----->
DEAR3(1)
<---------
ANAC58
--------->
ANAC58
<---------
DEAR3(1)
<---------
ARR11(3)
>
GAMYB
<---------
ANAC46
--------->
ANAC46
<---------
LBD16
--------->
ARR11(3)
->
MYB46(3)
------>
ZmHOX2a(1)
--------->
ANAC58
<----------
DOF2
<---------
At4g35610
---
-----
NtERF2
<---------
ALFIN1
------>
ZmHOX2a(1)
<---------
At4g35610
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
cgtcgaactactaatactccctcctccgtgttagattcctctccctcgccattggcagattccttttgcggcgaaaatacacctgaagaagacctgtcga
5812400
<---------
ANAC58
--------->
GLK1(2)
<---------
ANAC55(2)
--------->
HSFB2a(1)
<---------
ANAC58
--------->
HSFC1(2)
<---------
ANAC46
<---------
HSFB2a(1)
--------->
ANAC55(2)
--------->
LBD16
<---
<---------
ANAC55(1)
<---------
LBD16
<--------
<-------
TEIL
<---------
WRKY18(1)
<--------
<---------
GLK1(2)
----------->
HVH21
<---------
At1g77200
-->
ETT(2)
--------->
ARR11(1)
--------->
WRKY38(1)
<---------
GLK1(1)
---
ETT(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
--------->
WRKY12
--------->
ARR14(2)
---
HVH21
<---------
ARR14(2)
--------->
TOE1(2)
<---------
WOX13(1)
<---------
ARR14(2)
--->
NtERF2
--------->
CCA1(2)
---------->
DOF2
--------->
ATHB12
<---------
GLK1(1)
<---------
DEAR3(1)
cgactgcatacagatacgtgttcttagatgagaaagtaggatgactgagaaacgattgaccggagattccatgagttccgatgtggattttcgtcggtga
5812500
--------->
GLK1(2)
<---------
GLK1(2)
--------->
At4g35610
--------->
ARR14(2)
<------
ZmHOX2a(1)
----------->
ARR10
<------
NtERF2
>>>>
------
ANAC46
<------
ZmHOX2a(1)
<------
NtERF2
---------
-
MYB46(3)
<------
ZmHOX2a(1)
--------->
LBD16
---------
-
DEAR3(2)
<---------
LBD16
<---------
LBD16
<---------
ARR14(2)
cttacagagattctcaggaatttgaggagtgagaaacgatagcgagaatgaagaagtattggccggagaaggagatgaagacgaagaattcggcacgaag
5812600
<---------
LBD16
<---------
LBD16
--------->
ZAT18
*
TSS
<-------
TEIL
<---------
DAG2
<---------
ZAT2
<---------
ZAT14
<----------
DOF2
<------
NtERF2
--------->
ZAT14
<---------
At4g35610
<---------
ANAC58
---
>>>>>
TBF1
<----------
DOF2
<---------
ZAT18
--------->
CCA1(2)
------>
NtERF2
----
>
ANAC58
---------->
DOF2
<---------
MYB52(1)
<------
ZmHOX2a(1)
<---------
ANAC58
------
>
ANAC58
----------->
GT1
<-----------
GT1
<---------
AtLEC2
--------->
GLK1(2)
>>>>>>>>>
TBF1
aagaagtgcat
tgtttaaaaaagctttaactgataaaaccgtttgtgagctttttcatggaggagagacggagaagctaggcg
ggctcggggaagaagaa
5812700
<------
MYB83
<------
MYB46(1)
----------->
GT1
--------->
MYB59
--------->
ATHB12
<XXXXXXXXXXXXXXXXXXXX
MIR398A
<XXXXXXXXXXXXXXXXXXXX
MIR398B/C
<---------
TOE2(1)
<---------
TOE2(3)
--------->
DAG2
--------->
DOF5.7(2)
<---------------
AtSPL8
--------->
TOE2(3)
--------->
AtLEC2
--------->
TOE1(3)
<---------
YAB1
<-----------
GT1
<----------
DOF2
--------->
ANAC55(2)
------>
YAB1
<---------
TOE1(1)
<---------
At4g35610
<---------
ANAC55(2)
----->
ICU4
--------->
TOE1(2)
<---------
AHL20(2)
<------------
CBF
<---------
TOE1(3)
------
--->
YAB1
---------->
DOF2
--------->
YAB1
------->
TEIL
<---------
ANAC46
<-----
tgatggtcatgaaaagtacgatgttacccttatattaatctcagcttttatgtatattgtaatgttacgttaagggtgatttggtaatacatcggagaat
5812800
<---------
AHL20(1)
--------->
ARR11(3)
----------->
GT1
<-------
MYC2
------->
PIF5
<---------
O2
------->
MYC4
<---------
TGA1a
<-------
MYC4
--------->
O2
<-------
PIF5
==================
bZIP_DOF
------->
MYC2
--------->
bZIP60(2)
<-------
MYC3
--------->
TGA1a
------->
MYC3
<---------
ALFIN1
<---------
O2
--------->
ANAC46
--------->
O2
--------->
DEAR3(1)
<---------
ANAC55(2)
--------->
MYB52(1)
<---------
GLK1(1)
--------->
AHL20(1)
--------->
MYB46(3)
--------->
At4g35610
--------->
ANAC55(2)
<---------
ZAT18
------->
MYC3
<---------
At4g35610
--------->
TGA1a
--------->
ZAT14
<-------
MYC3
<---------
ANAC58
<---------
TGA1a
--->
ARR14(2)
================
MYC_MYB
<---------
AtLEC2
--------->
GLK1(1)
<---------
ARR11(3)
----
ARR14(2)
------->
GAMYB
---------->
DOF2
<---------
ANAC58
----------->
HVH21
acgactgtgcaataaccggccacgttgctaaagtttttggatggcttagctgaattggatttcagtgacacgtggtaatatcttattggtttgatgctct
5812900
<---------
AHL20(1)
--------->
AHL20(2)
--------->
GLK1(2)
--------->
ATHB12
<------
MYB46(1)
<-----------
ARR10
--------->
ICU4
----------->
GT1
<-
<---------
GLK1(2)
<---------
YAB1
<------
MYB83
----
<---------
ARR14(2)
<---------
AtLEC2
<--------
P
<----
--------->
HSFB2a(1)
<------
MYB83
--------->
YAB1
--------->
AHL20(1)
<---------
HSFB2a(1)
<------
MYB46(1)
<---------
ATHB12
<---------
AHL20(2)
----------->
ARR10
<---------
GLK1(1)
<-------
TEIL
<-------
TEIL
--------->
WOX13(1)
--------->
AHL20(2)
gagggagattcttagccaaaaaatcagtagaactctggtatggataggtgcatgattaagttcgtagtcatccaatcacaagaggttggaaataaatttt
5813000
---------
DOF2
<-----------
GT1
----------->
GT1
------>
ID1
--------->
YAB1
<---------
YAB1
<---------
TOE2(3)
-------
GT1
<---------
YAB1
<---------
YAB1
----------->
GT1
----------->
RAV1(1)
<--
tctttttcttcaattttagtttagctataatttttctattgttatagttggaaaatagtaagaaaatttccaccagaagactgcatataacgatgaaaaa
5813100
<------
MYB46(1)
<------
MYB83
--------->
ALFIN1
<XX
<------
ZmHOX2a(1)
<---------
ANAC58
<---
----------->
GT1
<----------
DOF2
<---------
ANAC46
<---
<---------
ARR14(2)
<---------
ANAC46
<---------
ANAC58
----
<---------------
AGL15
<---------
ANAC58
<------
NtERF2
<---
<-----------------
AGL1
<---------
ANAC58
<---------
RAP2.6(2)
<---
<-----------------
AG
<----------
DOF2
<---------
AtMYB61
<-------
-------
ICU4
<---------
YAB1
<---------
DAG2
----------->
GT1
<----------
DOF2
---------->
DOF2
acatgacaaatatggtactattgaactatattagataactttttgcgtttaggaccagaaaaaaaacaccatgctttggtggcttggtgcaaagcctttg
5813200
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AGI:
At3g17040.1
Description:
HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding. similar to EMB2770/STA1 (STABILIZED1), RNA splicing factor, transesterification mechanism [Arabidopsis thaliana] (TAIR:AT4G03430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44911.1); similar to hypothetical protein OsI_010952 [Oryza sativa (indica cultivar-group)] (GB:EAY89719.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76674.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440);
Range:
from: 5809272
to: 5812683
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.