Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                 <---                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                           ==========                                                                                           ------>ZmHOX2a(2)                                                                                           ==========                                                                                          <------ZmHOX2a(2)                                                                                         --------->ARR14(2)                                                                                         <---------ARR14(2)                                                                                         <---------ARR11(3)            --------->AHL20(1)                                                           <---------ARR14(3)   <---------GLK1(1)                                                                     --------->ARR11(3)   --------->GLK1(1)                                                                     --------->ARR14(3) --------HSFB2a(2)                                                --------->YAB1         <---------AGP1 ------->HSFB2a(2)      <---------ANAC46                    <---------ZAT6            <---------TOE2(3) -----ARR14(2)          <---------ANAC58             <---------RVE1(1)   <---------YAB1 <------ZmHOX2a(1) ---->ARR14(2)          <---------ANAC58            <---------GLK1(2)   --------->AHL20(2)=========== -->LBD16   <---------AHL20(2)  --------->YAB1      --------->ARR11(3)  <---------AHL20(2)=========== -LBD16     --------->AHL20(2) <---------ATHB12     <---------ARR11(3) --------->AHL20(2)--------->GLK1(2)   tctggatttcaaaataaaatgccaatgcgtttaatcataaactgaaatgctgaagatttttagtgtaatcaaattaaaatagacaattgaggatctggta  2177700                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------          <------ZmHOX2a(1)                                                                   <------    <---------YAB1                                                                            ------- ----ZmHOX2a(1)                                                                               ------- ---MYB46(1)                                                                                <-------- ---MYB83----------->GT1                                                                ----------->HVH21 ---P--------->ATHB12                                                                 <---------TGA1a ---MYB52(1)                                 <---------YAB1                           --------->TGA1a ====HOX2a_HOX2a                  --------->At4g35610                                 <---------O2 ================HOX2a_HOX2a      <---------At4g35610                                 --------->O2 ====HOX2a_HOX2a     --------->AHL20(2) <------ZmHOX2a(1)                           <---------ALFIN1 ================HOX2a_HOX2a  <-----------HVH21         ----------->HVH21        --------->PCF2------   ggaatattgataggaaaaacaaattgaatatatgtcatatgaggactatatttgatgggggacacattggagtttcggactcgtccccacatgaccacgt  2177800     <---------TOE2(3) --MYC3 --MYC2 ->PIF5                                                        --------->ANAC55(2) ->MYC2                                                   --------->ATHB51 --PIF5-------->HAHB4                                     <---------ICU4 -->TGA1a                                                 <--------ATHB1 ---ANAC55(2)                                             --------->AHL20(2) -->ANAC55(2)                                             <---------AHL20(2) -->O2<---------ATHB12                                   <---------YAB1 ---O2<---------YAB1                                     --------->ICU4 ---TGA1a                                  --------->ARR14(2)  <---------ANAC55(2) -->bZIP60(2)                              <---------ARR14(2)  <---------ANAC58               ------- -->ANAC46                   <---------GLK1(1)         --------->YAB1              <---------ZAT6 ----OsbHLH66                --------->GLK1(1) ------>ZmHOX2a(1)       <----------DOF2      <-------- ->MYC3--------->YAB1     <---------YAB1  <---------GLK1(1)    <---------ANAC58 ------>ZmHOX2a(1)   gagaactaatgatagttgagtcatttttctgatttctcatttgcaaatcctatagaataataatttcgtaacccttttattcctactgttcatgttacca  2177900                     --------->YAB1                    ----------->HVH21                                               <---------YAB1 --           --------->HSFC1(2)                  <----------DOF2                     <---------AHL20(1)           --------->HSFB2a(1)                 --------->TOE2(3)                   <---------AHL20(2)           <---------HSFB2a(1)           <-----------GT1     --------->YAB1        --------->AHL20(1)           <---------HSFC1(2)    <---------AHL20(2)         ----------->GT1       <---------AHL20(2)          ----------->ARR10      --------->AHL20(2) <---------------AtSPL8        --------->YAB1   -- -->MYB46(3)--------->KAN4(2)  --------->TOE2(3)   ---------->DOF2                --------->AHL20(2) ---GT1----------->GT1         <----------DOF2 --------->TOE1(3)        --------->MYB46(3)        ---   ccatttacagggaaaattctctatgacaaatttctttaattttaaacaactttaaaagtacaaggataatatcaacaaatcaaattatatttgttcatac  2178000                          <------------CBF                   --------->ARR14(2)                           --------->ZAT6    --------->At4g35610             <---------TOE2(3)      --------->AHL20(2)          <-----------GT1 --------->YAB1    ---------->DOF2<---------ARR14(2)--------->AHL20(2)       <-----------GT1   <---------ICU4 ---->MYB83 ---------->DOF2 ----------->GT1        ------------>CBF <-----------HVH21 ---->MYB46(1)     <---------ARR11(3)<---------AHL20(2) ------------>CBF    <------NtERF2          <- -------->RAV1(1) <---------CCA1(2)XXXXXXXXXXXXXXXXXXXX>MIR1888 <-----------------AGL1             <-   caacaaaaaagaattaaagtatatctgatattgaaaaattaaaatttgtaaacaacaattcaattttcactatcaggcctcatcatcagcaagtgatgtt  2178100              <---------ANAC58              <---------ANAC46     <---------YAB1                                                   -              <---------ANAC58    --------->ARR11(3)                                             ----          <------------CBF        <---------ARR11(3)                                            <----          <---------GLK1(2)      --------->YAB1                                                 ----- --------ANAC58           <----------DOF2                                 --------->ZAT6    <-------- --------ANAC58        <-----------GT1 <---------AHL20(2)    ----------->GT1       <---------YAB1<---   ttcttgggcctagattgtgtgatatatactttccatgatatttgattttctaaatttcaaaactcgaaaaacatttagactagttattgtagggctttac  2178200                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                            <------NtERF2                                                                                          --------->ANAC58                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                       <xxxxxxxxxxxxx                                                                               --------->ANAC58   <--                                                                               <xxxxxxxxxxxxxxxxxxxxx              --------->HSFB2a(2)                    --------->ALFIN1          --------->ANAC46  <---              <---------HSFB2a(2)      --------->ANAC58                        --------->ANAC58<xxxxx              <---------HSFC1(1)  --------->ANAC58  <------ZmHOX2a(1)         <xxxxxxxxxxxxxxxxxxxxxx              --------->HSFC1(1)  --------->ANAC58 <---------ZAT2             ------->GAMYB------>NtERF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------LBD16            <xxxxxxxxxxxxxxxxxxxxxxxx --------->DOF2--------->LBD16<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)< ----------->AGL15     <---------HSFB2a(2)       <-----------RAV1(2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------------AGL1     --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxx ------------>AGL1     <---------HSFC1(1)      <xxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB46(3)<xxxxx --DOF2     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ZAT2        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------------AGL15  --------->GLK1(2)  --------->ANAC58    --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   cccaaagggagcccttccagaaattctcgaaggcccaagacaagcttaggcccaggagggggtttggaaatagttttcaaccagcaatagacgcgcctcg  2178300            <---------At4g35610            --------->ZAT2     --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------------->AtSPL8 --------------AtSPL3 ------P<xxxxxxxxxxxxxxxxsmallRNA(s) xxxsmallRNA(i)  <-----------HVH21 -------MYB52(1) <-----------TGA1                                                              <----- xsmallRNA(s2)  <---------ANAC46                                                          ------->GAMYB ----GAMYB  --------->At4g35610                                                          <---------ATHB12 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      --------->MYB46(3) xxxxsmallRNA(si3) --------->ATHB12  --------->YAB1 ------>MYB83                        -------->P xsmallRNA(le3)<-------TEIL<---------ALFIN1<----------DOF2                              ------>MYB83 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ICU4  ------>MYB46(1)                     ------>MYB46(1) xxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)   ------->GAMYB <----------DOF2       --------->AtMYB61 xxxxxxxxxxxxxxxsmallRNA(se3)     ---------->DOF2 <---------MYB59                    --------->MYB46(3)   gttagtacctcattagctgcgtcattgccccaagcgcaaagatgactttcaaccgaactaaaccctctttatttatacccgaacaaaaccaaccatctta  2178400                                          ---------->DOF2                                       <---------HSFB2a(2)                                       --------->HSFB2a(2)                 <---------GLK1(1)     --------->HSFC1(1)                                          <-                <---------PCF2         <---------HSFC1(1)                                          --    <----------DOF2                 <---------YAB1                                    <---------HSFB2a(2) <---------ARR11(3)              <---------AHL20(2) <---------ARR14(2)                --------->HSFB2a(2) ------GT1   --------->ALFIN1    <---------YAB1     --------->ARR14(2)    <---------GLK1(2)      ----   caatttcttttcgatgtgggactccctctagttatattattctagaaagaaacctattcgctagatgaattgaacagactctcttcttctccaagtctct  2178500                                                        <-------TEIL                                                       --------->ARR14(1)                                                      <---------GLK1(2)                                               <----------ID1                                     ---           -------->P                      ---------->DOF2                                        <--     --------->RAP2.6(3)         --------->TOE2(3)    --------->ARR11(1)                         <--- --------HSFB2a(2)               <----------DOF2      --------->ARR14(2)                         ---- ------->HSFB2a(2) <----------DOF2 --------->AHL20(2) <---------ARR14(2)         <----------DOF2 ---- ---->P <------NtERF2            --------->TOE1(3)  ----------->ARR10 <-----------GT1            <---   accagaagacggcaacctcttctttctcaatacaactttaaatctgaaagcgacaagattcgttcacatatataactctgtagctttgtagttactgaag  2178600  Previous    Next  AGI:  At3g06900.1    Description:  U4.2; snRNA. gi|17674|emb|X67146.1|ATU42SN A.thaliana U4.2 snRNA gene Range:  from: 2178059    to: 2178632    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06895.1    Description:  unknown protein Range:  from: 2178135    to: 2178297    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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