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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<--
<---
<---
<-----
<------
==========
------>
ZmHOX2a(2)
==========
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
AHL20(1)
<---------
ARR14(3)
<---------
GLK1(1)
--------->
ARR11(3)
--------->
GLK1(1)
--------->
ARR14(3)
--------
HSFB2a(2)
--------->
YAB1
<---------
AGP1
------->
HSFB2a(2)
<---------
ANAC46
<---------
ZAT6
<---------
TOE2(3)
-----
ARR14(2)
<---------
ANAC58
<---------
RVE1(1)
<---------
YAB1
<------
ZmHOX2a(1)
---->
ARR14(2)
<---------
ANAC58
<---------
GLK1(2)
--------->
AHL20(2)
===========
-->
LBD16
<---------
AHL20(2)
--------->
YAB1
--------->
ARR11(3)
<---------
AHL20(2)
===========
-
LBD16
--------->
AHL20(2)
<---------
ATHB12
<---------
ARR11(3)
--------->
AHL20(2)
--------->
GLK1(2)
tctggatttcaaaataaaatgccaatgcgtttaatcataaactgaaatgctgaagatttttagtgtaatcaaattaaaatagacaattgaggatctggta
2177700
<-----
<-----
------
------
<-----
-------
<------
-------
-------
<------
<------
ZmHOX2a(1)
<------
<---------
YAB1
-------
----
ZmHOX2a(1)
-------
---
MYB46(1)
<--------
---
MYB83
----------->
GT1
----------->
HVH21
---
P
--------->
ATHB12
<---------
TGA1a
---
MYB52(1)
<---------
YAB1
--------->
TGA1a
====
HOX2a_HOX2a
--------->
At4g35610
<---------
O2
================
HOX2a_HOX2a
<---------
At4g35610
--------->
O2
====
HOX2a_HOX2a
--------->
AHL20(2)
<------
ZmHOX2a(1)
<---------
ALFIN1
================
HOX2a_HOX2a
<-----------
HVH21
----------->
HVH21
--------->
PCF2
------
ggaatattgataggaaaaacaaattgaatatatgtcatatgaggactatatttgatgggggacacattggagtttcggactcgtccccacatgaccacgt
2177800
<---------
TOE2(3)
--
MYC3
--
MYC2
->
PIF5
--------->
ANAC55(2)
->
MYC2
--------->
ATHB51
--
PIF5
-------->
HAHB4
<---------
ICU4
-->
TGA1a
<--------
ATHB1
---
ANAC55(2)
--------->
AHL20(2)
-->
ANAC55(2)
<---------
AHL20(2)
-->
O2
<---------
ATHB12
<---------
YAB1
---
O2
<---------
YAB1
--------->
ICU4
---
TGA1a
--------->
ARR14(2)
<---------
ANAC55(2)
-->
bZIP60(2)
<---------
ARR14(2)
<---------
ANAC58
-------
-->
ANAC46
<---------
GLK1(1)
--------->
YAB1
<---------
ZAT6
----
OsbHLH66
--------->
GLK1(1)
------>
ZmHOX2a(1)
<----------
DOF2
<--------
->
MYC3
--------->
YAB1
<---------
YAB1
<---------
GLK1(1)
<---------
ANAC58
------>
ZmHOX2a(1)
gagaactaatgatagttgagtcatttttctgatttctcatttgcaaatcctatagaataataatttcgtaacccttttattcctactgttcatgttacca
2177900
--------->
YAB1
----------->
HVH21
<---------
YAB1
--
--------->
HSFC1(2)
<----------
DOF2
<---------
AHL20(1)
--------->
HSFB2a(1)
--------->
TOE2(3)
<---------
AHL20(2)
<---------
HSFB2a(1)
<-----------
GT1
--------->
YAB1
--------->
AHL20(1)
<---------
HSFC1(2)
<---------
AHL20(2)
----------->
GT1
<---------
AHL20(2)
----------->
ARR10
--------->
AHL20(2)
<---------------
AtSPL8
--------->
YAB1
--
-->
MYB46(3)
--------->
KAN4(2)
--------->
TOE2(3)
---------->
DOF2
--------->
AHL20(2)
---
GT1
----------->
GT1
<----------
DOF2
--------->
TOE1(3)
--------->
MYB46(3)
---
ccatttacagggaaaattctctatgacaaatttctttaattttaaacaactttaaaagtacaaggataatatcaacaaatcaaattatatttgttcatac
2178000
<------------
CBF
--------->
ARR14(2)
--------->
ZAT6
--------->
At4g35610
<---------
TOE2(3)
--------->
AHL20(2)
<-----------
GT1
--------->
YAB1
---------->
DOF2
<---------
ARR14(2)
--------->
AHL20(2)
<-----------
GT1
<---------
ICU4
---->
MYB83
---------->
DOF2
----------->
GT1
------------>
CBF
<-----------
HVH21
---->
MYB46(1)
<---------
ARR11(3)
<---------
AHL20(2)
------------>
CBF
<------
NtERF2
<-
-------->
RAV1(1)
<---------
CCA1(2)
XXXXXXXXXXXXXXXXXXXX>
MIR1888
<-----------------
AGL1
<-
caacaaaaaagaattaaagtatatctgatattgaaaaattaaaatttgtaaacaacaa
ttcaattttcactatcaggcctcatcatcagcaagtgatgtt
2178100
<---------
ANAC58
<---------
ANAC46
<---------
YAB1
-
<---------
ANAC58
--------->
ARR11(3)
----
<------------
CBF
<---------
ARR11(3)
<----
<---------
GLK1(2)
--------->
YAB1
-----
--------
ANAC58
<----------
DOF2
--------->
ZAT6
<--------
--------
ANAC58
<-----------
GT1
<---------
AHL20(2)
----------->
GT1
<---------
YAB1
<---
ttcttgggcctagattgtgtgatatatactttcc
atgatatttgattttctaaatttcaaaactcgaaaaacatttagactagttattgtagggctttac
2178200
--
<-
<--
<------
NtERF2
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<xxxxxxxxxxxxx
--------->
ANAC58
<--
<xxxxxxxxxxxxxxxxxxxxx
--------->
HSFB2a(2)
--------->
ALFIN1
--------->
ANAC46
<---
<---------
HSFB2a(2)
--------->
ANAC58
--------->
ANAC58
<xxxxx
<---------
HSFC1(1)
--------->
ANAC58
<------
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxxxxx
--------->
HSFC1(1)
--------->
ANAC58
<---------
ZAT2
------->
GAMYB
------>
NtERF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
LBD16
<xxxxxxxxxxxxxxxxxxxxxxxx
--------->
DOF2
--------->
LBD16
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<
----------->
AGL15
<---------
HSFB2a(2)
<-----------
RAV1(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
-------------
AGL1
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxx
------------>
AGL1
<---------
HSFC1(1)
<xxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
MYB46(3)
<xxxxx
--
DOF2
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ZAT2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
------------
AGL15
--------->
GLK1(2)
--------->
ANAC58
--------->
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
cccaaagggagcccttccagaaattctcgaaggcccaagacaagcttaggcccaggagggggtttggaaatagttttcaaccagcaatag
acgcgcc
tcg
2178300
<---------
At4g35610
--------->
ZAT2
--------->
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
------------->
AtSPL8
--------------
AtSPL3
------
P
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxx
smallRNA(i)
<-----------
HVH21
-------
MYB52(1)
<-----------
TGA1
<-----
x
smallRNA(s2)
<---------
ANAC46
------->
GAMYB
----
GAMYB
--------->
At4g35610
<---------
ATHB12
xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
MYB46(3)
xxxx
smallRNA(si3)
--------->
ATHB12
--------->
YAB1
------>
MYB83
-------->
P
x
smallRNA(le3)
<-------
TEIL
<---------
ALFIN1
<----------
DOF2
------>
MYB83
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
ICU4
------>
MYB46(1)
------>
MYB46(1)
xxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
------->
GAMYB
<----------
DOF2
--------->
AtMYB61
xxxxxxxxxxxxxxx
smallRNA(se3)
---------->
DOF2
<---------
MYB59
--------->
MYB46(3)
gttagtacctcattagctgcgtcattgccccaagcgcaaagatgactttcaaccgaactaaaccctctttatttatacccgaacaaaaccaaccatctta
2178400
---------->
DOF2
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<---------
GLK1(1)
--------->
HSFC1(1)
<-
<---------
PCF2
<---------
HSFC1(1)
--
<----------
DOF2
<---------
YAB1
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
AHL20(2)
<---------
ARR14(2)
--------->
HSFB2a(2)
------
GT1
--------->
ALFIN1
<---------
YAB1
--------->
ARR14(2)
<---------
GLK1(2)
----
caatttcttttcgatgtgggactccctctagttatattattctagaaagaaacctattcgctagatgaattgaacagactctcttcttctccaagtctct
2178500
<-------
TEIL
--------->
ARR14(1)
<---------
GLK1(2)
<----------
ID1
---
-------->
P
---------->
DOF2
<--
--------->
RAP2.6(3)
--------->
TOE2(3)
--------->
ARR11(1)
<---
--------
HSFB2a(2)
<----------
DOF2
--------->
ARR14(2)
----
------->
HSFB2a(2)
<----------
DOF2
--------->
AHL20(2)
<---------
ARR14(2)
<----------
DOF2
----
---->
P
<------
NtERF2
--------->
TOE1(3)
----------->
ARR10
<-----------
GT1
<---
accagaagacggcaacctcttctttctcaatacaactttaaatctgaaagcgacaagattcgttcacatatataactctgtagctttgtagttactgaag
2178600
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AGI:
At3g06900.1
Description:
U4.2; snRNA. gi|17674|emb|X67146.1|ATU42SN A.thaliana U4.2 snRNA gene
Range:
from: 2178059
to: 2178632
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g06895.1
Description:
unknown protein
Range:
from: 2178135
to: 2178297
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.