Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ICU4                     --------->AtMYB61                   ------>NtERF2                 --------->MYB46(3)                ------>NtERF2                <---------ATERF1(1)                --------->At4g35610                <---------At4g35610              <------NtERF2              --------->ERF1              --------->RAP2.3(1)              --------->ATERF1(1)             --------->LBD16             <---------ATERF1(1)             --------->At4g35610      <---------REM1(1)                           --------->DEAR3(1)    <---------At4g35610                    <---------ZAT2    --------->At4g35610                    ----------->RAV1(2)          <---------MYB52(1) <---------ZAT2--------->RAP2.3(3)         --------->ZAT2          ------->GAMYB --------->At4g35610 --------------->AGL15 --------->At4g35610 <---------WRKY45 --------->ZAT2--------->DEAR3(1)        <-----------RAV1(2)   --------->ETT(2) <---------At4g35610 <---------------AGL15 <---------At4g35610 <---------WRKY12 ----------RAV1(2)--------->RAP2.6(2)   <------NtERF2     <---------ZAT18                     <------ ---->ZAT18  <---------At4g35610        <---------At4g35610    <---------WRKY38(1)            <------ ------HVH21--------->RAP2.6(2)         --------->At4g35610   --------->WRKY18(1)         <---------DAG2 --ANAC46   --------->DEAR3(1)     --------->ALFIN1       --------->ZAT14   <----------DOF2   <------ -LBD16     --------->ANAC46    --------->DAG2   <---------At4g35610  <---------MYB46(3)  <----------DOF2 >HVH21    --------->RAP2.3(1) ---------->DOF2--------->At4g35610 --------->MYB46(3)<-----------RAV1(1)   cacagctgctgtagccgcagccaccattacagggaaagtggctgcagctgcagcgactagtgtggtcaacagtcgttactttgctaatggggctttatgg  73100                                             <---------MYB46(3)                                            --------->ALFIN1                                         <---------DREB2C(2)                                       <---------ARR14(2)                                --------->RAP2.6(2)                                --------->DEAR3(1)                               --------->DEAR3(1)    <---------GLK1(2)<------NtERF2    <---------CCA1(2)        ----------->GT1                     --   --------->At4g35610         --------->ATERF1(1)    --------->ANAC58                             <-   <---------At4g35610        --------->At4g35610     --------->ANAC58                        ------- ---TOE2(3)     <------NtERF2 <---------At4g35610   <------ZmHOX2a(1)               <---------ANAC46 ---TOE1(3)   --------->ATERF1(1)------>NtERF2   <------ZmHOX2a(1)  ---------->DOF2 <---------ANAC58 ---YAB1<----------DOF2 ---------->DOF2--------->ARR14(2)     <---------TOE2(3)     <---------ANAC58<   ttctcagatgctttgggccgggctgcaaaagcagcggcccatatcggtggaggaggaagcaattgatgtaaaaagtctttgggcttccttggaaaacata  73200                                                                                    ----------->GT1                                                                           --------->ATHB12                                                                          <---------YAB1                                                                          --------->ICU4                                                                        --------->CCA1(2)                                                                       --------->ARR11(3)                                                                       <---------ARR14(2)           <                                   ----------->GT1                     --------->ARR11(1)           -      --------->CCA1(2)         --------->ALFIN1<----------ID1         --------->ARR14(2)--------->ANAC55(2) ------->AHL20(2)          ---------->DOF2      ----------->GT1        <---------ARR11(3)<---------ANAC55(2) --------AHL20(2)      --------->YAB1   ---------->DOF2         --------->YAB1     <---------TOE2(3)- -->TOE2(3)  ----------->GT1 --------->DAG2   ---------->DOF2   <---------ICU4    <-----------GT1   < ---------AHL20(2) ---------->DOF2 <---------ANAC46            --------->ICU4<---------YAB1    ------   aataaatgatatgtgaggttttaaagcataaaaggtgttgtgaaaagaaaaagaaaaaaaaaaccatcatgaagatatgattagtaacgttacatgatcg  73300                                                                  <---------ICU4                                                                  --------->YAB1                                                                 --------->ICU4                                                               --------->YAB1                       <                                                              <---------AHL20(2)                  <--                                                              <---------YAB1                   ======                                                             <---------AHL20(1)              <-------                                                             --------->AHL20(2)        --------->AHL20(1)       <---------TOE2(3)                          <---------AHL20(1)                   <---------AHL20(1) ---------ARR11(3)                 <---------ANAC55(2)       --------->AHL20(1)        <---------AHL20(2) -------->AHL20(1)          <---------DAG2        <---------ARR11(3)                   --------->AHL20(2) -------->ARR11(3)          <----------DOF2       --------->ARR11(3)                --------->AHL20(2) ---------AHL20(1)       <-----------GT1        --------->GLK1(2)<---------YAB1 <----------DOF2<----- >ZmHOX2a(2)        --------->AHL20(2)     ----------->GT1  --------->YAB1 ---------->DOF2   <-------   aaaatatttgaggcagaaactataaaataactttattacatgaactggagaatatatatgaaatataataataagcctaaagcttttaaaatattaagga  73400                                                                                           ------>MYB46(1)                                                                                           ------>MYB83                                                                                         <---------MYB59                                                                                         <---------MYB111(1)                                                                                         <---------MYB46(2)                                                                                        --------->ANAC55(1)                                                                                        *TSS                                                                                        --------->ANAC55(2)                                                                                        --------->ANAC58                                                                                        <---------ANAC55(2)        <-----------GT1                                                                 --------->ANAC58    <---------HSFC1(1)                                                           --------->ANAC58    --------->HSFC1(1)          ------>ZmHOX2a(1)                          --------->CCA1(2)    --------->HSFB2a(2)    ------>ZmHOX2a(1)                               <------ZmHOX2a(2)    ============================HOX2a_HOX2a                               --------->ARR11(3)    ------>ZmHOX2a(1)    ------>ZmHOX2a(2)                                <---------ARR14(2)    <---------HSFB2a(2)<---------ARR11(3)                                 --------->AGP1--------->ANAC46 ---------PCF2     <---------ANAC58                                       --------->ARR14(2) -------MYB46(3)   <---------ANAC58                                       <---------ARR11(3) ===============================HOX2a_HOX2a                              --------->GLK1(1)--------->MYB55(1) --TOE1(3)        --------->STY1(2)   <----------DOF2                   ----------->ARR10<---------MYB111(2) -ZmHOX2a(1) ------>MYB83==============HOX2a_HOX2a                 <-------TEIL  --------->ANAC46 --TOE2(3)   ------>MYB46(1)   --------->TOE2(3)<----------DOF2   <--------P     --------->ANAC58   tgggtcctagaaacctccctagcttgatcctttcctcattctttctctctctttctcttatatgagaggttgatgagatccacaagaaacacctaactca  73500                      --------->ANAC58                      --------->ANAC46                      --------->ANAC58               --------->GLK1(2)                                                 <------MYB46(1)               <---------ARR14(2)                --------->ZAT14                 <------MYB83               --------->ARR14(2)                <---------ZAT14             --------->ATHB12           ----------------->AG           <---------ICU4              --------->YAB1           ----------------->AGL1         --------->YAB1             --------->AHL20(2)<---------AtMYB61        --------->GLK1(1)   ---------->DOF2 <---------YAB1 <-----------GT1  ----------->HVH21       <   tttgatagtgatttccaaatctgcaaacaacaaagtatatttgatcatcactatactgatttcacaatccattaatcactgataggtttttggtggaata  73600                             --------->ZAT2               <---------------AGL15                             --------->At4g35610          ------>ZmHOX2a(1)                            --------->GLK1(2)         <---------ARR14(2)                         ------->GAMYB                --------->ARR14(2)                      ----------->RAV1(1)          <---------ANAC46                     --------->MYB46(3)            <---------ANAC58                            ------      ------->TEIL ----------->RAV1(1)             <---------ANAC58             --------->MYB46(3)--- -------TEIL     ------>ZmHOX2a(2)    <---------TOE2(3)  --------->TOE2(3)      <---------MYB111(2) -   catacatgtatgtgtttgatccaacaacagaagctggattgagattagagatggcgtttcctcaacatggttttatgttccaacaacttcatgaagacaa  73700         --------->ZAT2         <---------ZAT2         <---------At4g35610         --------->At4g35610      ============================HOX2a_HOX2a      =========================HOX2a_HOX2a      <------ZmHOX2a(2)     --------->ARR11(3)     <---------ARR11(3)     --------->ARR14(2)   --------->ICU4             <---------CCA1(2) ----->RAV1(1)             ------>ZmHOX2a(1)  --------->ZAT14               --------->ANAC46      <-- ---->GAMYB             ------>ZmHOX2a(1)     <---------ZAT14             <---------ALFIN1     <----- -------->WRKY18(1)  ---------->ID1     --------->YAB1  <----------DOF2<-----------GT1--------->CCA1(2)   cagtcaagatcagctcccttcttgtcctcctcatctcttcaatggtactatactctctctttctctcactatttctccacataaatagatttgagtcatg  73800                                                   <----------DOF2                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          --------->ARR14(2)                                          --------->ARR11(3) ------->MYC4                    ==============================HOX2a_HOX2a<-------PIF5           --------->TOE2(3)                    <------ZmHOX2a(1)     <---------ARR11(3) ------->MYC2           --------->TOE1(2)        <---------ANAC46                  <---------ARR14(2) <-------MYC3   <---------ICU4      <------MYB83  ===============================HOX2a_HOX2a          <------ZmHOX2a(2)      <------MYB46(1)  <------ZmHOX2a(1)  <-----------ARR10  ------->MYC3  <---------YAB1     <---------AtMYB61 ===========================HOX2a_HOX2a<-------MYC2  --------->ICU4    <---------MYB52(1) ============================HOX2a_HOX2a          =============================HOX2a_HOX2a   <-------GAMYB <------ZmHOX2a(1)        <---------AGP1     ------->PIF5--------->YAB1  <-----------RAV1(1) ----------->GT1     --------->AGP1   ------->TEIL<---------ARR11(3)         --- -------GLK1(1)  =================================HOX2a_HOX2a--------->TOE1(2)      --------->TOE2(2) ----YAB1        ==================================HOX2a_HOX2a         --------->ARR11(3)     <------ZmHOX2a(1)   aattctgttggtgtatataggaggaggaaactacatgatgaacagatctatgtctttaatgaacgtgcaagaagatcataatcaaaccttggatgaggag  73900                                                                                             --------             <---------------AtSPL8                                                          <------MYB46(1)           --------->ALFIN1            >>>>>>>>>TBF1                             --------->ARR11(3)  <-----------HVH21       --------->ZAT2                           <---------TOE2(3)         <------MYB83 --------->WOX13(1)       <---------ZAT2               --------->YAB1            <---------ARR11(3) ------>GLK1(2)<---------ZAT18  <----------ARF1   <------NtERF2    <---------TOE1(3)<----------DOF2   aatctatcagacgatggggcacatactatgctgggagagaagaagaagaggctgcaattagagcaagttaaggcattagagaagagctttgagcttggta  74000  Previous    Next  AGI:  At3g01210.1    Description:  nucleic acid binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G14340.1); similar to RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula] (GB:ABD32221.2); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 71633    to: 73227    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g01220.1    Description:  ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor. Identical to Homeobox-leucine zipper protein ATHB-20 (ATHB-20) [Arabidopsis Thaliana] (GB:Q8LAT0;GB:Q9MAD1); similar to ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15150.1); similar to homeobox protein [Gossypium hirsutum] (GB:ABO47743.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain Leuci Range:  from: 73488    to: 75545    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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