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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ICU4
--------->
AtMYB61
------>
NtERF2
--------->
MYB46(3)
------>
NtERF2
<---------
ATERF1(1)
--------->
At4g35610
<---------
At4g35610
<------
NtERF2
--------->
ERF1
--------->
RAP2.3(1)
--------->
ATERF1(1)
--------->
LBD16
<---------
ATERF1(1)
--------->
At4g35610
<---------
REM1(1)
--------->
DEAR3(1)
<---------
At4g35610
<---------
ZAT2
--------->
At4g35610
----------->
RAV1(2)
<---------
MYB52(1)
<---------
ZAT2
--------->
RAP2.3(3)
--------->
ZAT2
------->
GAMYB
--------->
At4g35610
--------------->
AGL15
--------->
At4g35610
<---------
WRKY45
--------->
ZAT2
--------->
DEAR3(1)
<-----------
RAV1(2)
--------->
ETT(2)
<---------
At4g35610
<---------------
AGL15
<---------
At4g35610
<---------
WRKY12
----------
RAV1(2)
--------->
RAP2.6(2)
<------
NtERF2
<---------
ZAT18
<------
---->
ZAT18
<---------
At4g35610
<---------
At4g35610
<---------
WRKY38(1)
<------
------
HVH21
--------->
RAP2.6(2)
--------->
At4g35610
--------->
WRKY18(1)
<---------
DAG2
--
ANAC46
--------->
DEAR3(1)
--------->
ALFIN1
--------->
ZAT14
<----------
DOF2
<------
-
LBD16
--------->
ANAC46
--------->
DAG2
<---------
At4g35610
<---------
MYB46(3)
<----------
DOF2
>
HVH21
--------->
RAP2.3(1)
---------->
DOF2
--------->
At4g35610
--------->
MYB46(3)
<-----------
RAV1(1)
cacagctgctgtagccgcagccaccattacagggaaagtggctgcagctgcagcgactagtgtggtcaacagtcgttactttgctaatggggctttatgg
73100
<---------
MYB46(3)
--------->
ALFIN1
<---------
DREB2C(2)
<---------
ARR14(2)
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
DEAR3(1)
<---------
GLK1(2)
<------
NtERF2
<---------
CCA1(2)
----------->
GT1
--
--------->
At4g35610
--------->
ATERF1(1)
--------->
ANAC58
<-
<---------
At4g35610
--------->
At4g35610
--------->
ANAC58
-------
---
TOE2(3)
<------
NtERF2
<---------
At4g35610
<------
ZmHOX2a(1)
<---------
ANAC46
---
TOE1(3)
--------->
ATERF1(1)
------>
NtERF2
<------
ZmHOX2a(1)
---------->
DOF2
<---------
ANAC58
---
YAB1
<----------
DOF2
---------->
DOF2
--------->
ARR14(2)
<---------
TOE2(3)
<---------
ANAC58
<
ttctcagatgctttgggccgggctgcaaaagcagcggcccatatcggtggaggaggaagcaattga
tgtaaaaagtctttgggcttccttggaaaacata
73200
----------->
GT1
--------->
ATHB12
<---------
YAB1
--------->
ICU4
--------->
CCA1(2)
--------->
ARR11(3)
<---------
ARR14(2)
<
----------->
GT1
--------->
ARR11(1)
-
--------->
CCA1(2)
--------->
ALFIN1
<----------
ID1
--------->
ARR14(2)
--------->
ANAC55(2)
------->
AHL20(2)
---------->
DOF2
----------->
GT1
<---------
ARR11(3)
<---------
ANAC55(2)
--------
AHL20(2)
--------->
YAB1
---------->
DOF2
--------->
YAB1
<---------
TOE2(3)
-
-->
TOE2(3)
----------->
GT1
--------->
DAG2
---------->
DOF2
<---------
ICU4
<-----------
GT1
<
---------
AHL20(2)
---------->
DOF2
<---------
ANAC46
--------->
ICU4
<---------
YAB1
------
aataaatgatatgtgaggttttaaagc
ataaaaggtgttgtgaaaagaaaaagaaaaaaaaaaccatcatgaagatatgattagtaacgttacatgatcg
73300
<---------
ICU4
--------->
YAB1
--------->
ICU4
--------->
YAB1
<
<---------
AHL20(2)
<--
<---------
YAB1
======
<---------
AHL20(1)
<-------
--------->
AHL20(2)
--------->
AHL20(1)
<---------
TOE2(3)
<---------
AHL20(1)
<---------
AHL20(1)
---------
ARR11(3)
<---------
ANAC55(2)
--------->
AHL20(1)
<---------
AHL20(2)
-------->
AHL20(1)
<---------
DAG2
<---------
ARR11(3)
--------->
AHL20(2)
-------->
ARR11(3)
<----------
DOF2
--------->
ARR11(3)
--------->
AHL20(2)
---------
AHL20(1)
<-----------
GT1
--------->
GLK1(2)
<---------
YAB1
<----------
DOF2
<-----
>
ZmHOX2a(2)
--------->
AHL20(2)
----------->
GT1
--------->
YAB1
---------->
DOF2
<-------
aaaatatttgaggcagaaactataaaataactttattacatgaactggagaatatatatgaaatataataataagcctaaagcttttaaaatattaagga
73400
------>
MYB46(1)
------>
MYB83
<---------
MYB59
<---------
MYB111(1)
<---------
MYB46(2)
--------->
ANAC55(1)
*
TSS
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC55(2)
<-----------
GT1
--------->
ANAC58
<---------
HSFC1(1)
--------->
ANAC58
--------->
HSFC1(1)
------>
ZmHOX2a(1)
--------->
CCA1(2)
--------->
HSFB2a(2)
------>
ZmHOX2a(1)
<------
ZmHOX2a(2)
============================
HOX2a_HOX2a
--------->
ARR11(3)
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<---------
ARR14(2)
<---------
HSFB2a(2)
<---------
ARR11(3)
--------->
AGP1
--------->
ANAC46
---------
PCF2
<---------
ANAC58
--------->
ARR14(2)
-------
MYB46(3)
<---------
ANAC58
<---------
ARR11(3)
===============================
HOX2a_HOX2a
--------->
GLK1(1)
--------->
MYB55(1)
--
TOE1(3)
--------->
STY1(2)
<----------
DOF2
----------->
ARR10
<---------
MYB111(2)
-
ZmHOX2a(1)
------>
MYB83
==============
HOX2a_HOX2a
<-------
TEIL
--------->
ANAC46
--
TOE2(3)
------>
MYB46(1)
--------->
TOE2(3)
<----------
DOF2
<--------
P
--------->
ANAC58
tgggtcctagaaacctccctagcttgatcctttcctcattctttctctctctttctcttatatgagaggttgatgagatccacaaga
aacacctaactca
73500
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
GLK1(2)
<------
MYB46(1)
<---------
ARR14(2)
--------->
ZAT14
<------
MYB83
--------->
ARR14(2)
<---------
ZAT14
--------->
ATHB12
----------------->
AG
<---------
ICU4
--------->
YAB1
----------------->
AGL1
--------->
YAB1
--------->
AHL20(2)
<---------
AtMYB61
--------->
GLK1(1)
---------->
DOF2
<---------
YAB1
<-----------
GT1
----------->
HVH21
<
tttgatagtgatttccaaatctgcaaacaacaaagtatatttgatcatcactatactgatttcacaatccattaatcactgataggtttttggtggaata
73600
--------->
ZAT2
<---------------
AGL15
--------->
At4g35610
------>
ZmHOX2a(1)
--------->
GLK1(2)
<---------
ARR14(2)
------->
GAMYB
--------->
ARR14(2)
----------->
RAV1(1)
<---------
ANAC46
--------->
MYB46(3)
<---------
ANAC58
------
------->
TEIL
----------->
RAV1(1)
<---------
ANAC58
--------->
MYB46(3)
---
-------
TEIL
------>
ZmHOX2a(2)
<---------
TOE2(3)
--------->
TOE2(3)
<---------
MYB111(2)
-
catac
atgtatgtgtttgatccaacaacagaagctggattgagattagagatggcgtttcctcaacatggttttatgttccaacaacttcatgaagacaa
73700
--------->
ZAT2
<---------
ZAT2
<---------
At4g35610
--------->
At4g35610
============================
HOX2a_HOX2a
=========================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ICU4
<---------
CCA1(2)
----->
RAV1(1)
------>
ZmHOX2a(1)
--------->
ZAT14
--------->
ANAC46
<--
---->
GAMYB
------>
ZmHOX2a(1)
<---------
ZAT14
<---------
ALFIN1
<-----
-------->
WRKY18(1)
---------->
ID1
--------->
YAB1
<----------
DOF2
<-----------
GT1
--------->
CCA1(2)
cagtcaagatcagctcccttcttgtcctcctcatctcttcaatg
gtactatactctctctttctctcactatttctccacataaatagatttgagtcatg
73800
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
ARR11(3)
------->
MYC4
==============================
HOX2a_HOX2a
<-------
PIF5
--------->
TOE2(3)
<------
ZmHOX2a(1)
<---------
ARR11(3)
------->
MYC2
--------->
TOE1(2)
<---------
ANAC46
<---------
ARR14(2)
<-------
MYC3
<---------
ICU4
<------
MYB83
===============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<------
MYB46(1)
<------
ZmHOX2a(1)
<-----------
ARR10
------->
MYC3
<---------
YAB1
<---------
AtMYB61
===========================
HOX2a_HOX2a
<-------
MYC2
--------->
ICU4
<---------
MYB52(1)
============================
HOX2a_HOX2a
=============================
HOX2a_HOX2a
<-------
GAMYB
<------
ZmHOX2a(1)
<---------
AGP1
------->
PIF5
--------->
YAB1
<-----------
RAV1(1)
----------->
GT1
--------->
AGP1
------->
TEIL
<---------
ARR11(3)
---
-------
GLK1(1)
=================================
HOX2a_HOX2a
--------->
TOE1(2)
--------->
TOE2(2)
----
YAB1
==================================
HOX2a_HOX2a
--------->
ARR11(3)
<------
ZmHOX2a(1)
aattctgttggtgtatatag
gaggaggaaactacatgatgaacagatctatgtctttaatgaacgtgcaagaagatcataatcaaaccttggatgaggag
73900
--------
<---------------
AtSPL8
<------
MYB46(1)
--------->
ALFIN1
>>>>>>>>>
TBF1
--------->
ARR11(3)
<-----------
HVH21
--------->
ZAT2
<---------
TOE2(3)
<------
MYB83
--------->
WOX13(1)
<---------
ZAT2
--------->
YAB1
<---------
ARR11(3)
------>
GLK1(2)
<---------
ZAT18
<----------
ARF1
<------
NtERF2
<---------
TOE1(3)
<----------
DOF2
aatctatcagacgatggggcacatactatgctgggagagaagaagaagaggctgcaattagagcaagttaaggcattagagaagagctttgagcttggta
74000
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AGI:
At3g01210.1
Description:
nucleic acid binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G14340.1); similar to RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula] (GB:ABD32221.2); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)
Range:
from: 71633
to: 73227
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At3g01220.1
Description:
ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor. Identical to Homeobox-leucine zipper protein ATHB-20 (ATHB-20) [Arabidopsis Thaliana] (GB:Q8LAT0;GB:Q9MAD1); similar to ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15150.1); similar to homeobox protein [Gossypium hirsutum] (GB:ABO47743.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain Leuci
Range:
from: 73488
to: 75545
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.