Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <-------TEIL                                                            <------MYB83                                                            <------MYB46(1)                                                    --------->WOX13(2)                           ----                                                 <---------------AGL15                           ----                                                --------->TOE2(3)                                <---                                        ---------->DOF2    <---------------AtSPL8                ----                                      --------->WOX13(2)   --------->MYB46(2)<---------KAN1      ----                                      <---------WOX13(2)   --------->MYB59 ----------->GT1      <----                                   ==============================MADS_MADS<------ZmHOX2a(1)     -----                           ----------->GT1      --------->TOE1(3)       <---------TOE1(3)       -----                 <---------ANAC46  --------------->AGL15   --------->MYB111(1)           --------->At4g35610                 ----------->GT1  --------->TOE2(3) <---------WOX13(2)  <---------TOE2(3)<---------At4g35610 -ATHB12         <---------MYB46(3)<---------------AGL15  <--------P--------->YAB1--------->ATHB12   tgacataaaaacaccagggtcgtttaaactagtaaaacttaataaaggaaccttaatagagtaggtacaatgttaaggagtaaatgagtgaagctcaaga  19669300                                                                      --------->ATHB51                                                                      <---------ICU4                                                                     <---------YAB5                                                                     <---------YAB1                                                                    <---------AHL25(2)                                                                    --------->AHL20(3)                                                                    --------->AHL12(3)                                                                    --------->AHL12(2)                                                                    <---------AHL20(3)                                                                   --------->YAB1                                                                   <---------ICU4                                                                 <---------AHL25(2)                                                                 --------->AHL20(3)                                                                 --------->AHL25(2)                                                                 --------->AHL12(3)                                                                 --------->AHL12(2)                                                                 <---------AHL20(3)                                                                <---------ICU4                                                                --------->YAB1                                                               <---------YAB1                                                         <---------AHL12(3)                                                         <---------AHL20(3)                                                         --------->AHL25(1)                                                         --------->AHL20(3)                                                         <---------AHL20(2)                                                        --------->AHL12(1)                                                      --------->ARR11(3)          ---------->DOF2     <---------WOX13(1)      <---------ARR11(3)     --------->ANAC58 ----->CCA1(2)               <---------WOX13(2)      <------ZmHOX2a(1)--------->ATHB12 ----->GLK1(1)              --------->ATHB12        --------->ICU4--------->ICU4 ------GLK1(1)             <---------YAB1          <---------TOE2(3)--------->AHL25(2) ----->KAN1 --------->DOF5.7(1)           --------->ANAC58    --------->AHL12(2)                    - ----->RVE1(1)            <---------MYB52(1) ---------->DOF2<---------AHL20(2)              --------- -----ARR11(3)           <-------GAMYB    --------->ANAC58  <---------YAB1   --------->ANAC46      -- ---->ARR14(2)     <------ZmHOX2a(1)  <------ZmHOX2a(1)<---------RVE1(1)     --------->ANAC58      <- ---->ARR11(3)  <------ZmHOX2a(1)    --------->ZAT18<---------YAB5<---------YAB1       --------->CCA1(2)   tatcccatgagacaaagaggaggactctgttgattgaagaggactagcaaagtaaggatttttttattattattattgcaagcaagaagatagagaaaga  19669400        --------->HSFB2a(2)      ------>MYB83      ------>MYB46(1)                                                            --------->RVE1(2)   --------->ZAT2                                                                <---------ARR14(2)   ----------->RAV1(2)                          >>>>>>>>>>>>>>>>>LFY             --------->ARR14(2)  ------>MYB83                      ----------->RAV1(1)                          <---------ARR11(2)  -------->P                      --------->ZAT18                                --------->ARR11(2)  ------>MYB46(1)       ----------->RAV1(1)     <<<<<<<<<<<<<<<<<LFY            <---------CCA1(2) -------->AtMYB61      <----------ID1          --------->ANAC58           <------ZmHOX2a(2) ->DOF2 <---------HSFB2a(2)  ---------->DOF2   --------->ANAC46         --------->YAB5 ------->MYB46(3)    --------->ANAC58          --------->ANAC58         ------->GAMYB      <---------YAB1 --------MYB52(2)    --------->ANAC58 --------->AtMYB61          ---------->ID1 --------->KAN1   aaccaacctgccagaagaagcgaaggcaacaagaagcccaccaaaaaactcgccattggaaacttttgtcttaacgatcaccatatcccaattctcatcg  19669500                        ------>NtERF2                       <---------ETT(1)                                                 <---------AHL12(2)                   <---------ZAT2                                                      --------->AHL12(3)                   --------->ZAT2                                                      <---------AHL12(1)            <---------ALFIN1                      --------->ANAC58                     --------->AHL12(1)          XXXXXXXXXXXXXXXXXXXXX>MIR853            --------->ANAC58                     <---------ICU4         ------>ZmHOX2a(2)                      --------->MYB52(1)                    --------->AHL25(3)        <------ZmHOX2a(2)                  --------->DAG2         <------NtERF2      <---------AHL12(3)       --------->GATA12----------->HVH21   --------->DOF5.7(1)   --------->LBD16     --------->AHL25(1)       <---------GATA12--------->DEAR3(1) --------->DOF5.7(1)  <------NtERF2         --------->AHL20(3)       <---------ARR11(2)                 ---------->DOF2     <------NtERF2          --------->AHL12(3)       --------->ARR11(2)                ---------->DOF2      ------>NtERF2          --------->AHL12(2)       --------->ARR11(3)              --------->HSFB2a(2)    <---------ATERF1(1)----------->GT1       <---------ARR14(2)              <---------HSFB2a(2)   --------->ANAC46    <------ZmHOX2a(1)       <---------ARR11(3)        <---------ARR11(3)------->GAMYB--------->DEAR3(1)   <---------AHL20(3)       --------->ARR14(2)  --------->TOE2(3)   <---------WRKY12<---------LBD16  ----------->GT1   aattcaatagatcccctctctagctccgacctcaatttcttccaaaaggccaacgaaatcagcccgccggagactaaaacggaggataaaaatttccaat  19669600                                <---------MYB46(3)                              <---------At4g35610                              <---------ZAT2                         --------->DOF5.7(1)                         --------->DAG2                        --------->DOF5.7(1)                        --------->DAG2                       ---------->DOF2                     --------->LBD16                                                               --                    --------->LBD16                                                                <-                    --------->ANAC46                                                               <-                   --------------->AGL15                                                           <-                   <---------------AGL15                                                           --                   --------->HSFB2a(2)                                                             --                   <---------HSFB2a(2)                                                             --                  <-----------------AGL1   <---------ANAC58                                  <-------           <---------STY1(2)  --------->At4g35610                    <---------ARR14(2)      --------           --------->STY1(2)<--------P     <---------ANAC46          <---------GATA12        --------  --------->ANAC58<-----------------AG     --------->ALFIN1   <---------ANAC58              ---------  --------->ANAC58----------------->AGL1   <---------ANAC58   <---------ANAC58         *TSS <--------   tctcacgaattctagcaagttcccgaaaaggtagctgttgaagatgtgtgtgaatttgaaggtggattgcaaatttgagagaattggaaactggaaatcc  19669700                                                               <---------YAB1                                                              <---------AHL20(1)                                                              <---------AHL20(2)                                                              --------->AHL20(3)                                                              <---------AHL25(1)                                                              <---------AHL20(3)                                                              <---------AHL25(3)                                                              --------->AHL25(3)                                                              <---------AHL25(2)                                                              --------->AHL25(1)                                                              --------->AHL25(2)                                                             --------->AHL12(3)                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                             <---------AHL12(1)                                                             --------->YAB1                                                             --------->AHL12(1)                                                             --------->AHL25(3)                                                             <---------AHL12(3)                                                         <---------AHL20(1)                                                         --------->AHL20(1)                                                         --------->AHL12(1)                                                         <---------AHL12(1)                                                         --------->AHL20(2)                                                         <---------AHL25(1)                                                         --------->AHL25(2)                                                         <---------AHL20(2)                                                         --------->AHL25(3)                                                         <---------AHL25(3)                                                         <---------AHL25(2)                                     ------------>CBF    <---------AHL20(3)                                    --------->ANAC58 <---------YAB1                                    --------->ANAC46--------->AHL25(3)                           <----------DOF2          --------->AHL20(2)                          ------>ZmHOX2a(2)         <---------AHL20(2)                          <---------DOF5.7(1)       <---------AHL20(3)      --------->ANAC46   <------ZmHOX2a(2)          --------->AHL20(3)      --------->ANAC58   <---------RVE1(1)      <---------ICU4--------->AHL20(1)      --------->ANAC58  <-----------ARR10      <---------YAB5<---------AHL25(3) ------->GATA12         <---------ARR14(2)     <---------YAB1<---------AHL25(1) --------ARR14(2)       <---------ARR11(3)   --------->YAB1  --------->AHL25(1)                    <- --------ARR11(2)       --------->ARR14(2)   <---------ICU4<---------AHL12(2)                    ---- --------GATA12         <---------ARR14(3)  <---------YAB5--------->AHL12(2)                     ---- ------->RVE1(2)        --------->ARR14(3)  --------->ICU4<---------AHL12(2)                     ==== ------->ARR14(2)       <---------GATA12  --------->YAB1 --------->AHL25(1)                  -------- ------->ARR11(2)       --------->ARR11(3)<---------ICU4--------->AHL25(3)                  <-------- --GATA12               --------->GATA12 --------->ICU4<---------WOX13(2) --------->LBD16  --------->RVE1(2) ->RVE1(2)            --------->DOF5.7(1)<---------ATHB12--------->AHL20(3)      ----------->GT1 <--- ->GATA12           ---------->DOF2 --------->ANAC58--------->AHL25(1)    ------>NtERF2    ------>MYB46(1) >GLK1(1)       ---------->DOF2    <---------HSFB2a(2) --------->WOX13(2)--------->DEAR3(1)------>MYB83 -GLK1(1)    --------->RVE1(2)     --------->HSFB2a(2)--------->YAB1    <------NtERF2     --------->WOX13(1)   aaatccacaagcaaaaatcaaagaaagatcttttcttctcgcaataatcatcattttaataaattatatttagcgccgagaaatggctaaaccaatcaaa  19669800                          <---------WOX13(1)                         <---------ANAC58                         <---------ANAC58                         <------------CBF                     <------------CBF                    <---------ICU4                    --------->ATHB51                    <--------ATHB1      <---------PCF2-------->ATHB1     <---------DEAR3(2) --------->ATHB12    <---------DEAR3(1) <---------YAB5    <---------ZAT18 --------->ATHB12 ============================================bZIP_DOF <---------ANAC46  <---------YAB1      --------->WOX13(2) <---------TGA1a   <---------ATHB51    <---------WOX13(2) --------->TGA1a   --------->ICU4<---------ANAC58          <-------GAMYB <---------O2      <---------ATHB12  --------->AHL20(2)   <------MYB46(1) --------->O2 --------->GLK1(2)  <---------ANAC46     --------->GLK1(1) ----------HVH21------------>ATHB5<----------DOF2     <---------GLK1(1) ----->DEAR3(2)------------>CBF  <---------ANAC58  --------->LBD16               <---------ATHB12 ----->MYB46(3)<-------TEIL    ------>NtERF2     <---------LBD16                <---------WOX13(2) ==========MYC_MYB<---------WOX13(2) <---------AHL20(2)   <------MYB83          --------->WOX13(2) ->YAB1      --------->GATA12<---------ANAC58   --------->MYB52(1)           ------------>CBF -ATHB12     <---------GATA12<---------ANAC58  <---------KAN1     <------------CBF---------->DOF2 ---------AtMYB77 --------->WOX13(2) --------->AHL25(3)  --------->MYB59  ----------->GT1          <<   ccgtcgtgggctcgagattcaattattgattgctggcttttaatttggaataccggagttcggttgagaattggaccggttcaataaagccaacaagttt  19669900                                                   --------->ANAC58               --------->ATHB12                  <---------ALFIN1               <---------KAN1                   --------->At4g35610              <---------ATHB51                  --------->ZAT2              <---------YAB1                 <---------ZAT14--------->ATERF1(1)              --------->ICU4                 <---------At4g35610     ------>ZmHOX2a(1)              <------MYB46(1)--------->ANAC58    --------->TOE2(3)               <------MYB83<---------At4g35610                      <----------DOF2    <---------ANAC58               <---------AtMYB61        <---------GLK1(1)           <---------ANAC58    <---------ANAC58          <---------KAN1 --------->At4g35610 ------>ZmHOX2a(1)      <---------ANAC58 <<<<<<<TBF1  *TSS     <------ZmHOX2a(1)     --------->ZAT14--------->GLK1(1)      <---------ICU4   cttcttccttatcgcgattattggaggagagaatgagttggtctctctgcagcacccatggggtctcctcttccatagctctcacttatggctttcgcca  19670000                                                                   --------->HSFB2a(1)                                                                   <---------HSFB2a(1)                   <-----------ARR10                               <---------KAN1                   <---------ARR14(2)                             --------->GATA12                   --------->ARR14(2)                             --------->ARR14(2)                 --------->LBD16                                 --------->ARR14(2)                <---------ANAC58                                 <---------ARR14(2)                <---------ANAC46                                 --------->ARR11(2)                <---------ANAC58                                 <---------GLK1(2)                <---------ANAC55(1)                             <------NtERF2                --------->ANAC55(2)                            --------->LBD16                <---------ANAC55(2)                           --------->RAP2.6(2)              ------>MYB83                                    --------->LBD16              ------>MYB46(1)                                 --------->RAP2.3(2)            --------->AtMYB61                                <------NtERF2            <---------DOF5.7(1)                              <---------LBD16            <---------DAG2                                  ------>NtERF2         <---------ALFIN1                                   --------->MYB52(1)       <------ZmHOX2a(2)                                   --------->DEAR3(1)       --------->CCA1(2)                                   --------->ANAC46      --------->RVE1(2)                                   <---------MYB55(2)      --------->GATA12                                    --------->DEAR3(2)      --------->AGP1                <---------ANAC46      --------->MYB46(3)      <---------GATA12           ----------->HVH21      <---------ARR14(2)      <---------ARR14(2)     --------->O2               --------->ARR14(2)      --------->ARR14(2)    ------>NtERF2           <------ZmHOX2a(1)   ------>ZmHOX2a(1)  <---------At4g35610      <---------ARR11(2)   --------->DEAR3(1)   XXXXXXXXXXXXXXXXXXXX>MIR169H-N             --------->At4g35610      --------->ARR11(3)   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->LBD16                --------->ZAT14      <---------ARR11(3)   <---------ALFIN1     XXXXXXXXXXXXXXXXXXXX>MIR169B/C          ------>ZmHOX2a(1)      --------->ARR11(2)--------->ANAC46       XXXXXXXXXXXXXXXXXXXX>MIR169D-G     ------>ZmHOX2a(1)    ----------->ARR10 <-----------GT1          XXXXXXXXXXXXXXXXXXXX>MIR169A  <---------DOF5.7(1)    -   tagaagaagatccaccttccgtattttcgccacctctgacggattagaacccaaggacgacccgccggaatctcctctcccttcctcatcctctgctctc  19670100                       <---------DOF5.7(1)                      <---------DOF5.7(1)                      <----------DOF2                     <----------DOF2                     <---------DOF5.7(1)                     <---------DAG2                   ------>NtERF2                   <------NtERF2                 <-------TEIL               --------->ARR14(2)       <---------YAB1             --------->DOF5.7(1)       <---------TOE2(3)                                        <----            --------->DOF5.7(1) <---------ARR11(3)                                   ------->TEIL <--            --------->DAG2      <<<<<<<<<<GT-1    <-------GAMYB              --------->YAB1    <-----           ---------->DOF2<-----------GT1   <---------DOF5.7(1)       --------->AtLEC2         ------ --------->DOF2<---------ARR14(2)     <-----------GT1          <------ZmHOX2a(1)   --------->ZAT18<--   ggtaaagacttgaaaaaggtccgccttttttctatatcatttacgatttttctgttgaaaccataggaagacatgaaaatgaaaatgcaccatgttagat  19670200  Previous    Next  AGI:  At2g48060.1    Description:  oxidoreductase. similar to unnamed protein product [Vitis vinifera] (GB:CAO68575.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22459.1); contains InterPro domain Cytochrome b/b6, C-terminal; (InterPro:IPR005798) Range:  from: 19665165    to: 19669687    Orientation: Reverse Links:  TAIR  MIPS  AIP    AGI:  At2g48070.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO22460.1) Range:  from: 19669914    to: 19671112    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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