Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ATHB51                                   --------->YAB1           <---------ICU4                                 --------->ANAC58          <---------ATHB51                                 --------->ANAC58     <------ZmHOX2a(1)<---------MYB52(1)                             <-----------HVH21       <------MYB46(1)  <-------GAMYB                <-      ----------->GT1        <---------PCF2          <------MYB83  ------>NtERF2                   <-     <---------ZAT6   <---------ANAC58             <--------P     <---------ALFIN1                 <-     ----------->GT1  <---------ANAC46         <------NtERF2--------->YAB1                       ---- <---------YAB1       <---------ANAC58        ------>NtERF2--------->ICU4          <---------ARR14(2) -----GT1       ---------->ID1--------->WRKY18(1) <---------MYB52(1)<------NtERF2  --------->ARR14(2)   ctcatgagagttaaatttgttgtttcttgtgggtcaagcataccttggcaccggtaggacaattatggccaccgttgttcttgcatttccacaaactagt  18171100                                                             <---------ATHB12                                                        <------ZmHOX2a(2)                                                       <---------ARR11(3)                                                       --------->AGP1          --------->ANAC55(2)                          <---------ARR14(2)                     -------          <---------ANAC55(2)                  --------->TOE1(1)                       <---------ARR11(3)      <-----------HVH21                       ------>ZmHOX2a(1)       <---------ANAC58 --------->ARR11(3) --------ANAC58                               <---------HSFB2a(2)     <---------ANAC58 <-----------ARR10 --------ANAC46                               =================HOX2a_HOX2a   --------->ICU4  <------- --------ANAC58                  --------->TOE2(3)     --------->ARR14(2)    <---------ATHB51-------- ----->ZAT18              <---------WOX13(1)  --------->HSFB2a(2)    <---------At4g35610    <--------   gccttgagcgtcaagtattccaccgtagattgaaacatcagtaacatcctcgaaccagatccaatgttttgagcttgcgataattctaaaatcttccgga  18171200                                                                                 --------->DEAR3(1)                                                                                --------->HSFB2a(1)                                                                                --------->DEAR3(2)                                                                                <---------HSFC1(2)                                                                                <---------HSFB2a(1)                                                                                --------->HSFC1(2)                                                                              <---------ARR14(2)                                      <---------ANAC58                        --------->ARR14(2)                                      <---------ANAC58                       --------->MYB46(3)                                      <---------ANAC46                 ------>NtERF2                <                                  <---------ANAC58                    --------->LBD16             ---                                  <---------ANAC58                   <---------HSFB2a(2)         <---  --------->ATHB12                --------->ATERF1(1)                --------->HSFB2a(2)      <------ --------->ICU4                   <-------GAMYB                 <---------HSFB2a(1)          -------- -->LBD16                --------->ARR11(3)                     <---------HSFC1(2)         <---------SPL7 --HSFB2a(2)             <---------ARR11(3)                     --------->HSFB2a(1)      <----------- ->HSFB2a(2)           ----------->ARR10  --------->ZAT6        --------->HSFC1(2)    <----------DOF2 -LBD16       <----------DOF2    <---------MYB46(3)   --------->AtLEC2<---------ETT(1)------>ZmHOX2a(1)   gcaacgattgagcctgctatacgaatagatattggcgcttgcttacactcgttgccatgaaaaacaaggttcccgaccaagaaccgtccttttggtacga  18171300                                                                                        --------->LBD16                         --------->ANAC46                                          <---------At4g35610    <---------REM1(1)    --------->ANAC58                                 <---------MYB52(1) ---------YAB1    <---------ARR14(2)                                     <---------RAP2.6(3) ------>YAB1      --------->ARR14(2)                            <----------DOF2    --------->At4g35610 ------YAB1   <---------LBD16                           <-------GAMYB   --------->RAP2.3(3) <------ZmHOX2a(1) ---YAB1 <------ZmHOX2a(1)    --------->bZIP60(2)      <---------MYB46(3)<---------SPL7<---------ANAC46 ->SPL7<---------TOE1(2) --------->ANAC58             <---------AtMYB61 --------->DEAR3(1)<---------TOE2(2) ----AtSPL3  --------->MYB52(1)<-----------HVH21    <----------DOF2   <---------At4g35610 --------->SPL7   ttatagttgtaggattagcggatgcacaagcaacgtcccatgcggctaagaaggctttggttgagtcttttgagccgtctggtttagctccgtaggataa  18171400                                          ----------->GT1          <---------ANAC58               <---------TOE1(3)          <---------AtLEC2               <---------TOE2(3)          <---------ANAC58     --------->ATHB12       <---------ZAT18         -------->HAHB4                      ---------->DOF2       <---------ZAT14         --------->YAB1              <---------YAB1       --------->ZAT18         <---------ICU4            --------->ATHB12    <---------ANAC58          --------->ICU4             --------->YAB1                         <----    <---------ANAC46          <---------ATHB12          --------->ICU4                   <---------ZAT6    <---------ANAC58         <---------TOE2(3)        --------->YAB1       --------->YAB1----------->GT1   gacgttgagtgtgcttggaatcggatgggctaatgatgagattaaggtaaaatcaagaatgatgagagccaaaggaagaataaggcatgaagtgttataa  18171500                                                     <---------HSFB2a(2)                                               --------->ARR11(3)                                   <                                               --------->ARR14(2)                                   -                                               <---------ARR11(3)                                   -                                               <---------ARR14(2)                          <---------YAB1                                              <------ZmHOX2a(1)                           <---------TOE2(3)                                       <------ZmHOX2a(1)                                 <-----------GT1                                     <---------TOE1(3)                                 <---------GLK1(1)                                 <----------DOF2 <------------CBF                    <------ZmHOX2a(1)                              <---------ZAT6<---------TOE2(3)                  <---------AHL20(2)   - -------GT1               <--------P <---------TOE2(3)          <-------TEIL  <-----------TBP  ------   accattttttggatttttttcagagaaggttagtgttttaaggatgaaggatattgtagaagaaggtacatgagatgggaatttataggatttacgatag  18171600      <---------ICU4      --------->YAB1      -------->HAHB4                 <---------YAB1      --------->ATHB12            --------->AHL20(2)     --------->ICU4               <---------AHL20(2)     <---------ATHB12      <---------ANAC58                                                       <--     <---------YAB1        <---------ANAC58                                 <---------LBD16---------- ---------ANAC55(2)     <----------DOF2          <------------CBF         --------->MYB52(1)     <--- -------->ANAC55(2)    --------->HSFB2a(1)    >>>>>>>>>>>>>>>>>LFY------->TEIL--------->LBD16    <--- -------->ANAC58       --------->HSFC1(2)     -------->P        <---------ZAT18            --------->ANAC55(2) -------->ANAC58       <---------HSFC1(2) --------->ARR11(3)   <---------ANAC58            <---------ANAC55(2) --->YAB1              <---------HSFB2a(1)<---------ARR11(3)   <---------ANAC58----------->GT1   ----   taacgtaatgattagtttatatggaactttcttgattttattaatatctaccattgtgtcaacttgtgtacctagataaccgggtaatttgttatgtaat  18171700              <---------TOE2(3)         <<<<<<<<<<MYB80        <---------MYB46(3)        <------MYB83                                                             --------->ANAC58        ----------->GT1                                                     <---------------AtSPL8        <------MYB46(1)                                               --------->SPL7       <---------AtMYB61      -------->HAHB4                        --------->ZAT14     <-------GAMYB            <---------ICU4                        --------->ZAT18    <------MYB83              <---------AHL20(2)                    <---------ZAT14    <------MYB46(1)          <---------ATHB51                       <---------SPL7    <---------MYB46(3)       --------->ICU4          --------->At4g35610    --------------->AtSPL8   --------->MYB59           <---------YAB1          <---------At4g35610----------->GT1 -------AHL20(2)           <---------ICU4        --------->TOE2(3)<---------------AtSPL3 ->GT1<--------P        --------->YAB1--------->ANAC58        <----------DOF2    --------->ANAC46 ------AHL20(2)         ----------->GT1          --------->TOE1(3)<---------------AtSPL8       ------ ------AHL20(1)      --------->YAB1   --------->ANAC58   --------->RAP2.6(3)<---------------AtSPL3 ----->AHL20(2) --------->AHL20(2)--------->ANAC46------>ZmHOX2a(1)<---------ZAT6--------->ANAC58   aaaatttggttggtttaatgaaataatagtaattattcgcaagataagtttccttagatgactgcattagtgtacggtaatgtacgaaattagattagtc  18171800                                                                                          <---------TOE2(3)                                                                                        -------->HAHB4                                                                                        <---------ICU4                                                                <------NtERF2          <---------ATHB51                                  ----------->GT1              <---------MYB46(3)      --------->ICU4                             <---------AHL20(2)             <------MYB83            --------->AHL20(2)                             --------->AHL20(2)            --------->MYB111(1)      <---------AHL20(1)                            --------->AHL20(2)        ------>ZmHOX2a(2)             --------->AHL20(1)                         --------->ATHB12     <---------YAB1<------MYB46(1)         <---------AHL20(2)  --------->ETT(2)     <---------WOX13(1)  <---------YAB1  <---------AtMYB61    --------->AHL20(2) ---->ID1   ----------->GT1<---------------AGL15 <---------TOE2(3)              <---------AHL20(2)   gttttcgacagagatagttatatggattgatttaattggaaaattttgattatggatcgatttggtggctctcgtttttggattaattaattatggaatg  18171900                                  >>>>>>>>>ARR2                                  >>>>>>>>>ARR2                                  >>>>>>>>>ARR1                                  >>>>>>>>>ARR1                                 <------ZmHOX2a(1)                                <---------YAB1                               <---------TOE2(2)                               <---------TOE2(3)                       <-----------GT1                   <---------AHL20(2)          <-----------GT1                   --------->AHL20(2)                 ------->TEIL            <---------AHL20(2)                 <---------ARR11(3)           <----------DOF2                --------->AHL20(2)                 --------->ARR11(3)           ------>ZmHOX2a(1)     --------->ZAT6<---------ICU4    <           >>>>>>>>>TBF1       <---------TOE1(2)   --------->ANAC55(2)   <---------YAB1             -   aagaaaacaagaagaagaagatttattacctcttaggattgtggtgtccttttatgtattttttttggtatcactatgatttaatattcactaacttaac  18172000  Previous    Next  AGI:  At2g43860.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G59850.1); similar to polygalacturonase [Prunus domestica subsp. insititia] (GB:ABD33834.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 18170022    to: 18171505    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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