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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ATHB51
--------->
YAB1
<---------
ICU4
--------->
ANAC58
<---------
ATHB51
--------->
ANAC58
<------
ZmHOX2a(1)
<---------
MYB52(1)
<-----------
HVH21
<------
MYB46(1)
<-------
GAMYB
<-
----------->
GT1
<---------
PCF2
<------
MYB83
------>
NtERF2
<-
<---------
ZAT6
<---------
ANAC58
<--------
P
<---------
ALFIN1
<-
----------->
GT1
<---------
ANAC46
<------
NtERF2
--------->
YAB1
----
<---------
YAB1
<---------
ANAC58
------>
NtERF2
--------->
ICU4
<---------
ARR14(2)
-----
GT1
---------->
ID1
--------->
WRKY18(1)
<---------
MYB52(1)
<------
NtERF2
--------->
ARR14(2)
ctcatgagagttaaatttgttgtttcttgtgggtcaagcatac
cttggcaccggtaggacaattatggccaccgttgttcttgcatttccacaaactagt
18171100
<---------
ATHB12
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
AGP1
--------->
ANAC55(2)
<---------
ARR14(2)
-------
<---------
ANAC55(2)
--------->
TOE1(1)
<---------
ARR11(3)
<-----------
HVH21
------>
ZmHOX2a(1)
<---------
ANAC58
--------->
ARR11(3)
--------
ANAC58
<---------
HSFB2a(2)
<---------
ANAC58
<-----------
ARR10
--------
ANAC46
=================
HOX2a_HOX2a
--------->
ICU4
<-------
--------
ANAC58
--------->
TOE2(3)
--------->
ARR14(2)
<---------
ATHB51
--------
----->
ZAT18
<---------
WOX13(1)
--------->
HSFB2a(2)
<---------
At4g35610
<--------
gccttgagcgtcaagtattccaccgtagattgaaacatcagtaacatcctcgaaccagatccaatgttttgagcttgcgataattctaaaatcttccgga
18171200
--------->
DEAR3(1)
--------->
HSFB2a(1)
--------->
DEAR3(2)
<---------
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFC1(2)
<---------
ARR14(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC58
--------->
MYB46(3)
<---------
ANAC46
------>
NtERF2
<
<---------
ANAC58
--------->
LBD16
---
<---------
ANAC58
<---------
HSFB2a(2)
<---
--------->
ATHB12
--------->
ATERF1(1)
--------->
HSFB2a(2)
<------
--------->
ICU4
<-------
GAMYB
<---------
HSFB2a(1)
--------
-->
LBD16
--------->
ARR11(3)
<---------
HSFC1(2)
<---------
SPL7
--
HSFB2a(2)
<---------
ARR11(3)
--------->
HSFB2a(1)
<-----------
->
HSFB2a(2)
----------->
ARR10
--------->
ZAT6
--------->
HSFC1(2)
<----------
DOF2
-
LBD16
<----------
DOF2
<---------
MYB46(3)
--------->
AtLEC2
<---------
ETT(1)
------>
ZmHOX2a(1)
gcaacgattgagcctgctatacgaatagatattggcgcttgcttacactcgttgccatgaaaaacaaggttcccgaccaagaaccgtccttttggtacga
18171300
--------->
LBD16
--------->
ANAC46
<---------
At4g35610
<---------
REM1(1)
--------->
ANAC58
<---------
MYB52(1)
---------
YAB1
<---------
ARR14(2)
<---------
RAP2.6(3)
------>
YAB1
--------->
ARR14(2)
<----------
DOF2
--------->
At4g35610
------
YAB1
<---------
LBD16
<-------
GAMYB
--------->
RAP2.3(3)
<------
ZmHOX2a(1)
---
YAB1
<------
ZmHOX2a(1)
--------->
bZIP60(2)
<---------
MYB46(3)
<---------
SPL7
<---------
ANAC46
->
SPL7
<---------
TOE1(2)
--------->
ANAC58
<---------
AtMYB61
--------->
DEAR3(1)
<---------
TOE2(2)
----
AtSPL3
--------->
MYB52(1)
<-----------
HVH21
<----------
DOF2
<---------
At4g35610
--------->
SPL7
ttatagttgtaggattagcggatgcacaagcaacgtcccatgcggctaagaaggctttggttgagtcttttgagccgtctggtttagctccgtaggataa
18171400
----------->
GT1
<---------
ANAC58
<---------
TOE1(3)
<---------
AtLEC2
<---------
TOE2(3)
<---------
ANAC58
--------->
ATHB12
<---------
ZAT18
-------->
HAHB4
---------->
DOF2
<---------
ZAT14
--------->
YAB1
<---------
YAB1
--------->
ZAT18
<---------
ICU4
--------->
ATHB12
<---------
ANAC58
--------->
ICU4
--------->
YAB1
<----
<---------
ANAC46
<---------
ATHB12
--------->
ICU4
<---------
ZAT6
<---------
ANAC58
<---------
TOE2(3)
--------->
YAB1
--------->
YAB1
----------->
GT1
gacgttgagtgtgcttggaatcggatgggctaatgatgagattaaggtaaaatcaagaatgatgagagccaaaggaagaataaggcatgaagtgttataa
18171500
<---------
HSFB2a(2)
--------->
ARR11(3)
<
--------->
ARR14(2)
-
<---------
ARR11(3)
-
<---------
ARR14(2)
<---------
YAB1
<------
ZmHOX2a(1)
<---------
TOE2(3)
<------
ZmHOX2a(1)
<-----------
GT1
<---------
TOE1(3)
<---------
GLK1(1)
<----------
DOF2
<------------
CBF
<------
ZmHOX2a(1)
<---------
ZAT6
<---------
TOE2(3)
<---------
AHL20(2)
-
-------
GT1
<--------
P
<---------
TOE2(3)
<-------
TEIL
<-----------
TBP
------
accat
tttttggatttttttcagagaaggttagtgttttaaggatgaaggatattgtagaagaaggtacatgagatgggaatttataggatttacgatag
18171600
<---------
ICU4
--------->
YAB1
-------->
HAHB4
<---------
YAB1
--------->
ATHB12
--------->
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
<---------
ATHB12
<---------
ANAC58
<--
<---------
YAB1
<---------
ANAC58
<---------
LBD16
----------
---------
ANAC55(2)
<----------
DOF2
<------------
CBF
--------->
MYB52(1)
<---
-------->
ANAC55(2)
--------->
HSFB2a(1)
>>>>>>>>>>>>>>>>>
LFY
------->
TEIL
--------->
LBD16
<---
-------->
ANAC58
--------->
HSFC1(2)
-------->
P
<---------
ZAT18
--------->
ANAC55(2)
-------->
ANAC58
<---------
HSFC1(2)
--------->
ARR11(3)
<---------
ANAC58
<---------
ANAC55(2)
--->
YAB1
<---------
HSFB2a(1)
<---------
ARR11(3)
<---------
ANAC58
----------->
GT1
----
taacgtaatgattagtttatatggaactttcttgattttattaatatctaccattgtgtcaacttgtgtacctagataaccgggtaatttgttatgtaat
18171700
<---------
TOE2(3)
<<<<<<<<<<
MYB80
<---------
MYB46(3)
<------
MYB83
--------->
ANAC58
----------->
GT1
<---------------
AtSPL8
<------
MYB46(1)
--------->
SPL7
<---------
AtMYB61
-------->
HAHB4
--------->
ZAT14
<-------
GAMYB
<---------
ICU4
--------->
ZAT18
<------
MYB83
<---------
AHL20(2)
<---------
ZAT14
<------
MYB46(1)
<---------
ATHB51
<---------
SPL7
<---------
MYB46(3)
--------->
ICU4
--------->
At4g35610
--------------->
AtSPL8
--------->
MYB59
<---------
YAB1
<---------
At4g35610
----------->
GT1
-------
AHL20(2)
<---------
ICU4
--------->
TOE2(3)
<---------------
AtSPL3
->
GT1
<--------
P
--------->
YAB1
--------->
ANAC58
<----------
DOF2
--------->
ANAC46
------
AHL20(2)
----------->
GT1
--------->
TOE1(3)
<---------------
AtSPL8
------
------
AHL20(1)
--------->
YAB1
--------->
ANAC58
--------->
RAP2.6(3)
<---------------
AtSPL3
----->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC46
------>
ZmHOX2a(1)
<---------
ZAT6
--------->
ANAC58
aaaatttggttggtttaatgaaataatagtaattattcgcaagataagtttccttagatgactgcattagtgtacggtaatgtacgaaattagattagtc
18171800
<---------
TOE2(3)
-------->
HAHB4
<---------
ICU4
<------
NtERF2
<---------
ATHB51
----------->
GT1
<---------
MYB46(3)
--------->
ICU4
<---------
AHL20(2)
<------
MYB83
--------->
AHL20(2)
--------->
AHL20(2)
--------->
MYB111(1)
<---------
AHL20(1)
--------->
AHL20(2)
------>
ZmHOX2a(2)
--------->
AHL20(1)
--------->
ATHB12
<---------
YAB1
<------
MYB46(1)
<---------
AHL20(2)
--------->
ETT(2)
<---------
WOX13(1)
<---------
YAB1
<---------
AtMYB61
--------->
AHL20(2)
---->
ID1
----------->
GT1
<---------------
AGL15
<---------
TOE2(3)
<---------
AHL20(2)
gttttcgacagagatagttatatggattgatttaattggaaaattttgattatggatcgatttggtggctctcgtttttggattaattaattatggaatg
18171900
>>>>>>>>>
ARR2
>>>>>>>>>
ARR2
>>>>>>>>>
ARR1
>>>>>>>>>
ARR1
<------
ZmHOX2a(1)
<---------
YAB1
<---------
TOE2(2)
<---------
TOE2(3)
<-----------
GT1
<---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
------->
TEIL
<---------
AHL20(2)
<---------
ARR11(3)
<----------
DOF2
--------->
AHL20(2)
--------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
ZAT6
<---------
ICU4
<
>>>>>>>>>
TBF1
<---------
TOE1(2)
--------->
ANAC55(2)
<---------
YAB1
-
aagaaaacaagaagaagaagatttattacctcttaggattgtggtgtccttttatgtattttttttggtatcactatgatttaatattcactaacttaac
18172000
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AGI:
At2g43860.1
Description:
polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G59850.1); similar to polygalacturonase [Prunus domestica subsp. insititia] (GB:ABD33834.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:
from: 18170022
to: 18171505
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.