Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ANAC58                                                                                           --------->ANAC58                                                                                 --------->ATHB12                                                                                 --------->ATHB51                                                                                 <---------ICU4                                                                                 <--------ATHB1------                     ----------->GT1                                             -------->HAHB4------                <---------DAG2                                    <---------GLK1(2)   <----------ID1                <----------DOF2                     --------->ANAC58            <---------AHL20(2)              ------>MYB46(1)        --------->ANAC46 ---------->DOF2           <---------ATHB51              ------>MYB83         <-----------GT1  --------->ANAC58            --------->AHL20(2)   ttgaaaaaaaaacaccaactttttggtaaaactattttcacgataaacattttcaagaaagggattcaaattcttgggctaaataattgggacaagtaag  18002600                                                           <------ZmHOX2a(1)                                                      --------->ANAC58                                               --------->PCF2           --------->ARR14(2)                                               <---------ZAT18          <---------ARR14(2)         <x                                               --------->ZAT18          ------->TEIL              <xx                                            <xxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xx                                           --------->DAG2<---------TOE2(2)                        <xx                                    --------->AHL20(2)--------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(se3)-     --------->ANAC46               --------->YAB1    --------->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     --------->ANAC58           --------->AHL20(2)  <---------ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(le3)<xx     --------->ANAC58          --------->AHL20(2)  <---------REM1(2)<---------LBD16       ----------- --->ANAC58             <-----------GT1  ---------->DOF2 <---------TOE1(2)       --------->ZAT14  <xx --->ANAC58      ----------->GT1<---------AHL20(2)<---------ALFIN1 <xxxxxxxxxxxxxxxxsmallRNA(le3) <xx   cattttcaagaaactacagttgtaatttacaaaattaataaaaaaaaggtgcccacacgcaggatagaactacggaccttcagtttacaagactgacgct  18002700                       <---------ANAC58                       <---------ANAC58                     *TSS     <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       --------->YAB1   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             ------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->AGP1 xxxxxxxxxxxxxxsmallRNA(fl3)                                 --------->ARR11(3) xxxxxxxxxxxxxxxxxsmallRNA(i2)                               <---------GLK1(2) -------->MYB46(3)<----------DOF2                           <---------At4g35610 xxxxxxxxxxxxxxxxxxsmallRNA(se3)                           ----------->ARR10                        < >HVH21  <----------DOF2<----------DOF2    <---------AHL20(1)--------->ARR14(2)                   --- xxxxxxxxxxxxxxxsmallRNA(si3)              <---------AHL20(2)<---------ARR11(3)         <---------YAB1 xxxxxxxxxxxxxxsmallRNA(se3)               --------->AHL20(1)<---------ARR14(2)        <-----------TBP   ctaccactgagctatacgggcttttgctttgtttcttcttactaaaatatttggattagttcagatccttatttaatgagaaagtttgtttttatagttt  18002800                                                      ----------->GT1                                             --------->ETT(2)                                            <---------HSFB2a(2)                                       --------->GLK1(1)                      <------ZmHOX2a(1)                    ----------->GT1    <---------RVE1(1)                    --------->ANAC46        <                <---------ZAT14       <---------GLK1(2)--------->YAB1     <---------TOE2(1)      <---       <-----------GT1                --------->ARR14(2)                  <---------TOE1(1)   -------    --------->TOE2(3)                 <---------ARR14(2)              --------->ANAC58        ------- ----------DOF2 --------->ZAT14       --------->ARR11(3)              --------->ANAC58        <------ ------->ID1  --------->ANAC46        <---------ARR11(3)          <------ZmHOX2a(1) <-------TEIL ----   gtcttttcttaactatacaacactgttaaatctaatttcagatattctcgacagaaatgaaaatcacaggacaagtacgaggaacatacagtagtgaatc  18002900                                                  --------->MYB46(3)                                           <---------ETT(1)                                       <----------DOF2                                      <---------DAG2               --------->GLK1(2)     --------->HSFB2a(1) <<<<<<ZML2   <---------GLK1(2)      <---------HSFB2a(1) ------HSFB2a(2)               <-----------GT1--------->MYB46(3) -->GLK1(2)   --------->ARR14(2)    ------->TEIL ------>MYB83 >TEIL    <-------TEIL         --------->MYB52(1)------>MYB46(1)              *TSS ---ARR14(2)  <---------ARR14(2)  ------->GAMYB--------->AtMYB61        ------->GAMYB ----->HSFB2a(2)  <---------YAB1 <---------MYB52(2)   ------->GAMYB    --------->ANAC46<----------DOF2   tagaactagaagtacagattctccttggaaatataacgaacctttccgaccaacaacgacatcaacttcatcaacgacatcaacttcatctttttatcga  18003000                                                                    --------->AHL20(2)                        ----------->GT1                             <---------AHL20(2)                  <------NtERF2                                  --------->YAB1                 --------->LBD16                           ----------->GT1  <---------ICU4               <---------LBD16                            --------->DAG2   --------->ICU4             --------->ALFIN1       ----------->GT1  --------->At5g28300 --------->YAB1  --------->YAB1----------------->AGL1 --------->AHL20(2)---------->DOF2--------->AHL20(2)     <----- ----------->GT1<---------ANAC46   ----------->GT1  ----------->GT1 --------->AHL20(1)         ------   aaaatgaaaatacaagtggcggaatagggaaataaaactgttaaaatacgacctcggtaaaaagtaaaaataaaataaaaattagaacaatttcattagc  18003100                                                                                              -------                                                                                              -------                                                                                            ------>MYB46(1)                                                                                            ------>MYB83                                                                                           --------->MYB55(1)                                                                                           <---------ALFIN1        <------ZmHOX2a(2)                   --------->MYB46(3)                            <---------MYB55(2)        --------->CCA1(2)                 ----------->RAV1(1)                             <---------ABI4(2)        =============================HOX2a_HOX2a                                          --------->MYB46(3)        ================================HOX2a_HOX2a                                      --------->DEAR3(2)       --------->ARR14(2)               --------->At4g35610                             --------->PCF2       --------->AGP1                  --------->ANAC58                                --------->ARR14(2)       --------->ARR11(3)              --------->ANAC58             --------->MYB46(3) <---------ARR14(2)       <---------ARR11(3)            <---------MYB52(1)             --------->ANAC46--------->ANAC58       <---------ARR14(2)           --------->LBD16               <-----------GT1   --------->ANAC46   ---------->DOF2            ------>ZmHOX2a(1)                 <---------ATHB12    --------->ANAC58 ----At4g35610 --------->ARR11(3)  <---------ANAC46   <---------HSFB2a(2)          ------->TEIL<----- --->At4g35610 <---------ARR11(3)------>ZmHOX2a(1)    --------->HSFB2a(2)         --------->MYB52(1)   tcagttaaagatccaaaaatctcattcacttcctcctccgtgagcaacaaatcgatcgagaaaccaataaacgacccgaacaatgaacggaacccaccgt  18003200                                                                       --------->YAB1                                                                      <---------YAB1                                                                      <------ZmHOX2a(2)                                                                    --------->YAB1                                                                    ------->GAMYB                                                                   --------->MYB46(3)                                            --------->ANAC55(2)------>ZmHOX2a(1)                                            --------->TGA1a   --------->TOE2(3)                                       --------->ZAT2        ====================================HOX2a_HOX2a                                       --------->At4g35610   ------>ZmHOX2a(2)                                  ===============================HOX2a_HOX2a                                  ====================================HOX2a_HOX2a                                  <------ZmHOX2a(2)         =====================================HOX2a_HOX2a                                 --------->ARR11(3)         <------ZmHOX2a(2)                                 <---------ARR11(3)        --------->ARR14(2)                             <---------MYB52(1)            <---------ARR11(3)                            <---------SPL7  ================================MYC_MYB                            <---------RAP2.6(3)            <---------ARR14(3)                           <---------ANAC46 <---------TGA1a<---------ARR14(2)                           <---------ANAC55(2)             --------->ARR14(3)                 -------                           <---------ANAC58 <---------O2   --------->ARR11(3)     <---------ANAC58---                           <---------ANAC58 ==================MYC_MYB ===========================HOX2a_HOX2a -->DEAR3(1)          --------->YAB1   <---------ZAT2-------->P==============HOX2a_HOX2a     -------- -->DREB2C(2)        <---------YAB1    <---------At4g35610===================HOX2a_HOX2a  ------>ZmHOX2a(1) ------TGA1     <---------ZAT6--------->SPL7--------->O2  <------ZmHOX2a(1)       <---------ANAC58---   catcatcttcttcaactagtcttatcatgccgtaagatcacagctcaagtgactcaaccaggatcctcaacgatcatagcaatggcttcatcctccgagc  18003300                                                                                    <------NtERF2                                                                                   ------>NtERF2                                                        <---------HSFB2a(2)        <---------DEAR3(2)                                                        --------->HSFB2a(2)       <---------DEAR3(1)                                                       <---------LBD16            --------->DEAR3(1)                                                  --------------->AGL15           <---------At1g77200                                                  <---------------AGL15          --------->ATERF1(1)                                                 --------->MYB46(3)              <------NtERF2                     <------NtERF2               <-----------------AGL3         <-----------HVH21                    ------>NtERF2                <-----------------AGL2        <---------TGA1a                   --------->ANAC58              <---------ATHB12              --------->O2 <--------                   --------->ANAC46              ----------------->AGL2      --------->ANAC55(2)                   --------->ANAC58             ------>MYB46(1)              --------->ANAC46                 --------->DEAR3(1)             -------->P                ----------->HVH21 <--------      ------>ZmHOX2a(1)                         ------>MYB83              <---------REM1(2)<---------HSFC1(2) --------->GLK1(1)------>NtERF2                 =========================================MYC_MYB <---------GLK1(1)--------->LBD16          --------->ANAC58              <-----------HVH21 --------->HSFC1(2) -->ANAC46   --------->DAG2       <---------GLK1(2)  --------->ARR14(2)  <----------DOF2  --------->GLK1(2) ------>ANAC58   --------->RAP2.6(2)       --------->ANAC58     =========================bZIP_DOF ->LBD16    ---------->DOF2       --------->ARR14(2) <---------ARR14(2)  ================bZIP_DOF ------>ANAC58   <---------ATERF1(1)     <---------ALFIN1       ---------->DOF2--------->TGA1a   aagaattcctagcaaaaagccgcgccaatctctaccgattccctcactccaaccatttctgggactcaaagaccgcttcacgcgtcggcgagaagcttgg  18003400                <------MYB46(1)                <------MYB83 <---------ANAC55(1) <---------ANAC58 <---------ANAC58                                                                          <---------MYB52(1) <---------ANAC46       <---------ANAC46                           <-----------GT1 --------->ARR11(3) <---------ANAC55(2)   <---------TOE2(3)                    ------>NtERF2          <---------ARR11(3) -ANAC58    <---------ZAT2                         --------->GLK1(1)         ---------->DOF2<-------- -ANAC58   --------->ARR11(3)                      <---------GLK1(1)  --------->AtMYB61   <-------GAMYB   gttacgtttaagagagcttggtgttgacgtagtctccattgatgcagacgaagaaatctctcggcctattcaccatcgcaaaagagttcttccgttgttc  18003500  Previous    Next  AGI:  At2g43300.1    Description:  pre-tRNA. tRNA-Thr (anticodon: TGT) Range:  from: 18002650    to: 18002721    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43310.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO64788.1); contains domain SSF53137 (SSF53137) Range:  from: 18002978    to: 18003765    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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